ncbo_resource_index 1.0 → 1.1

data/lib/ncbo_resource_index.rb

@@ -94,24 +94,12 @@ module NCBO
       raise ArgumentError, ":resourceids must be an array" unless @options[:resourceids].kind_of? Array
       resource = resource.upcase
       
-      "http://rest.bioontology.org/resource_index/details/false/virtual/concept/1032/resource/AE/0/9999?conceptid=Melanoma&elementid=E-GEOD-18509"
-      
       concept_annotations = []
       concepts.each do |concept|
         split_concept = concept.split("/")
         ontology_id = split_concept[0]
         concept_id = split_concept[1]
         virtual = @options[:isVirtualOntologyId] ? "/virtual" : ""
-        puts ["#{@options[:resource_index_location]}",
-                           "details/#{@options[:elementDetails]}",
-                           virtual,
-                           "/concept/#{ontology_id}",
-                           "/resource/#{resource}",
-                           "/#{@options[:offset]}",
-                           "/#{@options[:limit]}",
-                           "?conceptid=#{CGI.escape(concept_id)}",
-                           "&elementid=#{CGI.escape(element)}",
-                           "&apikey=#{@options[:apikey]}"].join("")
         result_xml = open(["#{@options[:resource_index_location]}",
                            "details/#{@options[:elementDetails]}",
                            virtual,
@@ -161,7 +149,7 @@ module NCBO
                          "?offset=#{@options[:offset]}",
                          "&limit=#{@options[:limit]}",
                          "&conceptids=#{@options[:conceptids].join(",")}",
-                         "&ontologiesToKeepInResult=#{@options[:ontologiesToKeepInResult]}",
+                         "&ontologiesToKeepInResult=#{@options[:ontologiesToKeepInResult].join(",")}",
                          "&isVirtualOntologyId=#{@options[:isVirtualOntologyId]}",
                          "&apikey=#{@options[:apikey]}"].join("")
       result_xml = open(["#{@options[:resource_index_location]}",
@@ -169,7 +157,7 @@ module NCBO
                          "?offset=#{@options[:offset]}",
                          "&limit=#{@options[:limit]}",
                          "&conceptids=#{@options[:conceptids].join(",")}",
-                         "&ontologiesToKeepInResult=#{@options[:ontologiesToKeepInResult]}",
+                         "&ontologiesToKeepInResult=#{@options[:ontologiesToKeepInResult].join(",")}",
                          "&isVirtualOntologyId=#{@options[:isVirtualOntologyId]}",
                          "&apikey=#{@options[:apikey]}"].join("")).read
       Parser::ResourceIndex.parse_ranked_element_results(result_xml)

metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: ncbo_resource_index
 version: !ruby/object:Gem::Version
-  version: '1.0'
+  version: '1.1'
   prerelease: 
 platform: ruby
 authors:
@@ -9,7 +9,7 @@ authors:
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2012-01-25 00:00:00.000000000 Z
+date: 2012-07-11 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: libxml-ruby