ncbi-blast-dbs 0.0.3 → 0.0.4
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- data/lib/ncbi-blast-dbs.rake +18 -3
- data/ncbi-blast-dbs.gemspec +1 -1
- metadata +1 -1
data/lib/ncbi-blast-dbs.rake
CHANGED
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@@ -1,10 +1,25 @@
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require 'net/ftp'
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# Downloads tarball at the given URL if a local copy does not exist, or if the
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# local copy is older than at the given URL, or if the local copy is corrupt.
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def download(url)
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file = File.basename(url)
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-
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-
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-
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# Download tarball if the local copy is older than at the given URL or fetch
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# it for the first time.
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sh "wget -N #{url}"
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# Resume aborted download. Do nothing if the file is already fully retrieved
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# (at the cost is a round trip to server).
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sh "wget -c #{url}"
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# Always download md5 and verify the tarball. Re-download tarball if corrupt;
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# extract otherwise.
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sh "wget #{url}.md5 && md5sum -c #{file}.md5" do |matched, _|
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if !matched
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sh "rm #{file} #{file}.md5"; download(url)
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else
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sh "tar xvf #{file}"
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end
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end
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end
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def databases
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data/ncbi-blast-dbs.gemspec
CHANGED
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@@ -2,7 +2,7 @@ Gem::Specification.new do |s|
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s.authors = ['Anurag Priyam']
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s.email = ['anurag08priyam@gmail.com']
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s.name = 'ncbi-blast-dbs'
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s.version = '0.0.
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s.version = '0.0.4'
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s.summary = 'Fast download BLAST databases from NCBI.'
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s.description = <<DESC
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Downloads BLAST databases from NCBI. Database files (volumes) are downloaded in
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