ncbi-blast-dbs 0.0.3 → 0.0.4

data/lib/ncbi-blast-dbs.rake

@@ -1,10 +1,25 @@
 require 'net/ftp'
 
+# Downloads tarball at the given URL if a local copy does not exist, or if the
+# local copy is older than at the given URL, or if the local copy is corrupt.
 def download(url)
   file = File.basename(url)
-  sh "wget -Nc #{url} && wget -Nc #{url}.md5 &&"\
-     " md5sum -c #{file}.md5 && tar xvf #{file}"\
-     " || rm #{file} #{file}.md5"
+  # Download tarball if the local copy is older than at the given URL or fetch
+  # it for the first time.
+  sh "wget -N #{url}"
+  # Resume aborted download. Do nothing if the file is already fully retrieved
+  # (at the cost is a round trip to server).
+  sh "wget -c #{url}"
+
+  # Always download md5 and verify the tarball. Re-download tarball if corrupt;
+  # extract otherwise.
+  sh "wget #{url}.md5 && md5sum -c #{file}.md5" do |matched, _|
+    if !matched
+      sh "rm #{file} #{file}.md5"; download(url)
+    else
+      sh "tar xvf #{file}"
+    end
+  end
 end
 
 def databases

data/ncbi-blast-dbs.gemspec

@@ -2,7 +2,7 @@ Gem::Specification.new do |s|
   s.authors     = ['Anurag Priyam']
   s.email       = ['anurag08priyam@gmail.com']
   s.name        = 'ncbi-blast-dbs'
-  s.version     = '0.0.3'
+  s.version     = '0.0.4'
   s.summary     = 'Fast download BLAST databases from NCBI.'
   s.description = <<DESC
 Downloads BLAST databases from NCBI. Database files (volumes) are downloaded in

metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: ncbi-blast-dbs
 version: !ruby/object:Gem::Version
-  version: 0.0.3
+  version: 0.0.4
   prerelease: 
 platform: ruby
 authors: