mutations_caller_pipeline_aws 0.0.18 → 0.0.20
Sign up to get free protection for your applications and to get access to all the features.
- data/bin/mutations_caller_pipeline_aws +2 -2
- metadata +1 -1
@@ -30,7 +30,7 @@ ________________________________________________________________________________
|
|
30
30
|
Also you should have the indices for bwa and GATK prepared.
|
31
31
|
NOTE: Only paired end reads are supported!
|
32
32
|
|
33
|
-
+++ C L U S T E R V E R S I O N - 0.0.
|
33
|
+
+++ C L U S T E R V E R S I O N - 0.0.20 +++
|
34
34
|
|
35
35
|
config.yml should look like this:
|
36
36
|
# config.yml
|
@@ -206,7 +206,7 @@ end
|
|
206
206
|
|
207
207
|
# get information from sample sheet
|
208
208
|
CSV.foreach(options[:samplesheet],{:headers => :first_row}) do |row|
|
209
|
-
if sample_name
|
209
|
+
if sample_name == row["SampleID"]
|
210
210
|
options[:index] = row["Index"]
|
211
211
|
lane = row["Lane"]
|
212
212
|
sample_project = row["SampleProject"]
|