muscle_bio 0.3.0 → 0.4.0

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@@ -2,13 +2,16 @@ require "muscle_bio/version"
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  module MuscleBio
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- def self.run(cmd)
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+ def self.run(cmd, useSudo = false)
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  file = (/darwin/ =~ RUBY_PLATFORM) != nil ? "muscle_mac_64" :
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  (/cygwin|mswin|mingw|bccwin|wince|emx/ =~ RUBY_PLATFORM) != nil ? "muscle_windows_32.exe" : "muscle_linux_64"
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  file = File.join( File.dirname(__FILE__), 'runnable/'+file)
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  cmd = cmd.sub 'sudo ', ''
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  cmd = cmd.sub 'muscle', file
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- cmd = 'sudo ' + cmd + " -quiet"
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+ cmd = cmd + " -quiet"
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+ if useSudo
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+ cmd = 'sudo ' + cmd
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+ end
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  `#{cmd}`
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  end
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@@ -1,3 +1,3 @@
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  module MuscleBio
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- VERSION = "0.3.0"
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+ VERSION = "0.4.0"
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  end
metadata CHANGED
@@ -1,14 +1,14 @@
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  --- !ruby/object:Gem::Specification
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  name: muscle_bio
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  version: !ruby/object:Gem::Version
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- version: 0.3.0
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+ version: 0.4.0
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  platform: ruby
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  authors:
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  - Michael Clark
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  autorequire:
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  bindir: exe
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  cert_chain: []
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- date: 2019-06-11 00:00:00.000000000 Z
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+ date: 2019-06-21 00:00:00.000000000 Z
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  dependencies:
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  - !ruby/object:Gem::Dependency
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  name: bundler