mspire 0.10.4 → 0.10.5

checksums.yaml

@@ -1,7 +1,7 @@
 ---
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-  data.tar.gz: 72e98503c17aba6707379a5d9a2ffb12130861f7
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data/lib/mspire/spectrum_like.rb

@@ -120,6 +120,25 @@ module Mspire
       self
     end
 
+    # the range begin value will also be excluded on an exact match if
+    # exclude_begin is true.  (respects the ranges exclude_end? value for the
+    # end).
+    def select_indices(range, exclude_begin=false)
+      indices = []
+      _mzs = mzs
+      lo_i = _mzs.bsearch_lower_boundary {|v| v <=> range.begin }
+      return indices unless lo_i
+
+      hi_i = nil
+      (lo_i..._mzs.size).each do |i|
+        break unless range === _mzs[i]
+        indices << i
+      end
+
+      indices.shift if exclude_begin && range.begin == _mzs[indices.first]
+      indices
+    end
+
     # returns the m/z that is closest to the value, favoring the lower m/z in
     # the case of a tie. Uses a binary search.
     def find_nearest(val)

data/lib/mspire/version.rb

@@ -1,3 +1,3 @@
 module Mspire
-  VERSION = "0.10.4"
+  VERSION = "0.10.5"
 end

data/spec/mspire/spectrum_spec.rb

@@ -43,5 +43,16 @@ describe Mspire::Spectrum do
       spec.mzs.should == subject.mzs
       spec.intensities.should == subject.intensities
     end
+
+    specify 'select_indices returns the indices whose m/z values lie within the given range' do
+      spec = Mspire::Spectrum.new [[10.1, 10.5, 10.7, 11.5, 11.6], [2, 1, 4, 3, 5]]
+      expect(spec.select_indices( 10.5...11.5 )).to eq([1,2])
+      expect(spec.select_indices( 10.5..11.5 )).to eq([1,2,3])
+      expect(spec.select_indices( 10.5...11.5, true )).to eq([2])
+
+      [10.6..10.65, 0..1, 12..13].each do |range|
+        expect(spec.select_indices(range)).to eq([])
+      end
+    end
   end
 end

metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: mspire
 version: !ruby/object:Gem::Version
-  version: 0.10.4
+  version: 0.10.5
 platform: ruby
 authors:
 - John T. Prince
@@ -9,7 +9,7 @@ authors:
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2014-01-08 00:00:00.000000000 Z
+date: 2014-01-14 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: nokogiri