ms-msrun 0.3.3 → 0.3.4

data/History

@@ -1,3 +1,6 @@
+== 0.3.4 / 2011-03-30
+* removed dependency on narray until its better supported on windows (for 1.9)
+
 == 0.3.3 / 2011-01-27
 * bug fixes on plms1
 

data/Rakefile

@@ -18,7 +18,6 @@ gemspec = Gem::Specification.new do |s|
   s.rubyforge_project = 'mspire'
   s.add_dependency 'ms-core', ">= 0.0.3"
   s.add_dependency 'nokogiri'
-  s.add_dependency 'narray'
 end
 
 Jeweler::Tasks.new(gemspec)

data/VERSION

@@ -1 +1 @@
-0.3.3
+0.3.4

data/lib/ms/msrun/nokogiri/mzml.rb

@@ -6,7 +6,6 @@ require 'ms/data'
 require 'ms/data/lazy_io'
 require 'ms/precursor'
 require 'ms/mzxml'
-require 'narray'
 
 class Ms::Msrun::Nokogiri::Mzml
   NetworkOrder = false

data/lib/ms/msrun/nokogiri/mzxml.rb

@@ -7,7 +7,6 @@ require 'ms/data'
 require 'ms/data/lazy_io'
 require 'ms/precursor'
 require 'ms/mzxml'
-require 'narray'
 
 class Ms::Msrun::Nokogiri::Mzxml
   NetworkOrder = true

metadata

@@ -5,8 +5,8 @@ version: !ruby/object:Gem::Version
   segments: 
   - 0
   - 3
-  - 3
-  version: 0.3.3
+  - 4
+  version: 0.3.4
 platform: ruby
 authors: 
 - John T. Prince
@@ -14,7 +14,7 @@ autorequire:
 bindir: bin
 cert_chain: []
 
-date: 2011-01-27 00:00:00 -07:00
+date: 2011-03-30 00:00:00 -06:00
 default_executable: 
 dependencies: 
 - !ruby/object:Gem::Dependency 
@@ -45,25 +45,12 @@ dependencies:
         version: "0"
   type: :runtime
   version_requirements: *id002
-- !ruby/object:Gem::Dependency 
-  name: narray
-  prerelease: false
-  requirement: &id003 !ruby/object:Gem::Requirement 
-    none: false
-    requirements: 
-    - - ">="
-      - !ruby/object:Gem::Version 
-        segments: 
-        - 0
-        version: "0"
-  type: :runtime
-  version_requirements: *id003
 description: A library for working with LC/MS runs. Part of mspire.  Has parsers for mzXML v1, 2, and 3, mzData (currently broken) and mzML (planned).  Can convert to commonly desired search output (such as mgf).  Fast random access of scans, and fast reading of the entire file.
 email: jtprince@gmail.com
 executables: 
-- ms_to_plms1.rb
 - base64_to_array.rb
 - ms_to_obiwarp.rb
+- ms_to_plms1.rb
 - ms_to_search.rb
 extensions: []
 
@@ -71,7 +58,6 @@ extra_rdoc_files:
 - LICENSE
 - README.rdoc
 files: 
-- .gitignore
 - .gitmodules
 - History
 - LICENSE
@@ -152,8 +138,8 @@ homepage: http://jtprince.github.com/ms-msrun/rdoc
 licenses: []
 
 post_install_message: 
-rdoc_options: 
-- --charset=UTF-8
+rdoc_options: []
+
 require_paths: 
 - lib
 required_ruby_version: !ruby/object:Gem::Requirement 
@@ -180,17 +166,17 @@ signing_key:
 specification_version: 3
 summary: an mspire library for working with LC/MS runs (mzxml, mzData, mzML)
 test_files: 
-- spec/ms/msrun_bm.rb
-- spec/ms/msrun/test_parsing_xml_frags/test_failures.rb
-- spec/ms/msrun/test_parsing_xml_frags/parse_test.rb
-- spec/ms/msrun/search_spec.rb
-- spec/ms/msrun/plms1_spec.rb
-- spec/ms/msrun/index_spec.rb
 - spec/ms/msrun/hpricot.rb
-- spec/ms/msrun/sha1_spec.rb
+- spec/ms/msrun/index_spec.rb
+- spec/ms/msrun/plms1_spec.rb
 - spec/ms/msrun/scan_spec.rb
-- spec/ms/spectrum/filter_spec.rb
-- spec/ms/spectrum/compare_spec.rb
+- spec/ms/msrun/search_spec.rb
+- spec/ms/msrun/sha1_spec.rb
+- spec/ms/msrun/test_parsing_xml_frags/parse_test.rb
+- spec/ms/msrun/test_parsing_xml_frags/test_failures.rb
+- spec/ms/msrun_bm.rb
 - spec/ms/msrun_spec.rb
 - spec/ms/scan_spec.rb
+- spec/ms/spectrum/compare_spec.rb
+- spec/ms/spectrum/filter_spec.rb
 - spec/spec_helper.rb

data/.gitignore

@@ -1,6 +0,0 @@
-rdoc
-*.swp
-pkg
-*.gemspec
-doc
-.yardoc