ms-in_silico 0.4.1 → 0.4.2

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data/Rakefile CHANGED
@@ -2,7 +2,7 @@ require 'rake'
2
2
  require 'jeweler'
3
3
  require 'rake/testtask'
4
4
  require 'rake/rdoctask'
5
- require 'rcov/rcovtask'
5
+ #require 'rcov/rcovtask'
6
6
 
7
7
  Jeweler::Tasks.new do |gem|
8
8
  gem.name = "ms-in_silico"
@@ -12,10 +12,9 @@ Jeweler::Tasks.new do |gem|
12
12
  gem.homepage = "http://github.com/jtprince/ms-in_silico"
13
13
  gem.authors = ["Simon Chiang"]
14
14
  gem.rubyforge_project = "mspire"
15
- gem.add_dependency("molecules", ">= 0.2.0")
16
- gem.add_dependency("tap", ">= 0.17.0")
17
- gem.add_development_dependency("tap-test", ">= 0.1.0")
15
+ gem.add_runtime_dependency("molecules", ">= 0.2.0")
18
16
  gem.add_development_dependency("spec-more", ">= 0")
17
+ gem.add_development_dependency "jeweler"
19
18
  end
20
19
  Jeweler::GemcutterTasks.new
21
20
 
@@ -25,11 +24,11 @@ Rake::TestTask.new(:spec) do |spec|
25
24
  spec.verbose = true
26
25
  end
27
26
 
28
- Rcov::RcovTask.new do |spec|
29
- spec.libs << 'spec'
30
- spec.pattern = 'spec/**/*_spec.rb'
31
- spec.verbose = true
32
- end
27
+ #Rcov::RcovTask.new do |spec|
28
+ # spec.libs << 'spec'
29
+ # spec.pattern = 'spec/**/*_spec.rb'
30
+ # spec.verbose = true
31
+ #end
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32
 
34
33
  task :default => :spec
35
34
 
data/VERSION CHANGED
@@ -1 +1 @@
1
- 0.4.1
1
+ 0.4.2
File without changes
metadata CHANGED
@@ -5,8 +5,8 @@ version: !ruby/object:Gem::Version
5
5
  segments:
6
6
  - 0
7
7
  - 4
8
- - 1
9
- version: 0.4.1
8
+ - 2
9
+ version: 0.4.2
10
10
  platform: ruby
11
11
  authors:
12
12
  - Simon Chiang
@@ -14,8 +14,8 @@ autorequire:
14
14
  bindir: bin
15
15
  cert_chain: []
16
16
 
17
- date: 2010-11-15 00:00:00 -07:00
18
- default_executable: digest.rb
17
+ date: 2011-03-30 00:00:00 -06:00
18
+ default_executable: digest_aaseq.rb
19
19
  dependencies:
20
20
  - !ruby/object:Gem::Dependency
21
21
  name: molecules
@@ -33,7 +33,7 @@ dependencies:
33
33
  type: :runtime
34
34
  version_requirements: *id001
35
35
  - !ruby/object:Gem::Dependency
36
- name: tap
36
+ name: spec-more
37
37
  prerelease: false
38
38
  requirement: &id002 !ruby/object:Gem::Requirement
39
39
  none: false
@@ -42,30 +42,13 @@ dependencies:
42
42
  - !ruby/object:Gem::Version
43
43
  segments:
44
44
  - 0
45
- - 17
46
- - 0
47
- version: 0.17.0
48
- type: :runtime
45
+ version: "0"
46
+ type: :development
49
47
  version_requirements: *id002
50
48
  - !ruby/object:Gem::Dependency
51
- name: tap-test
49
+ name: jeweler
52
50
  prerelease: false
53
51
  requirement: &id003 !ruby/object:Gem::Requirement
54
- none: false
55
- requirements:
56
- - - ">="
57
- - !ruby/object:Gem::Version
58
- segments:
59
- - 0
60
- - 1
61
- - 0
62
- version: 0.1.0
63
- type: :development
64
- version_requirements: *id003
65
- - !ruby/object:Gem::Dependency
66
- name: spec-more
67
- prerelease: false
68
- requirement: &id004 !ruby/object:Gem::Requirement
69
52
  none: false
70
53
  requirements:
71
54
  - - ">="
@@ -74,24 +57,23 @@ dependencies:
74
57
  - 0
75
58
  version: "0"
76
59
  type: :development
77
- version_requirements: *id004
60
+ version_requirements: *id003
78
61
  description: peptide fragmentation and protein digestion
79
62
  email: jtprince@gmail.com
80
63
  executables:
81
- - digest.rb
64
+ - digest_aaseq.rb
82
65
  extensions: []
83
66
 
84
67
  extra_rdoc_files:
85
68
  - LICENSE
86
69
  - README.rdoc
87
70
  files:
88
- - .gitignore
89
71
  - History
90
72
  - LICENSE
91
73
  - README.rdoc
92
74
  - Rakefile
93
75
  - VERSION
94
- - bin/digest.rb
76
+ - bin/digest_aaseq.rb
95
77
  - lib/ms/in_silico.rb
96
78
  - lib/ms/in_silico/digester.rb
97
79
  - lib/ms/in_silico/fragment.rb
@@ -108,8 +90,8 @@ homepage: http://github.com/jtprince/ms-in_silico
108
90
  licenses: []
109
91
 
110
92
  post_install_message:
111
- rdoc_options:
112
- - --charset=UTF-8
93
+ rdoc_options: []
94
+
113
95
  require_paths:
114
96
  - lib
115
97
  required_ruby_version: !ruby/object:Gem::Requirement
@@ -136,9 +118,9 @@ signing_key:
136
118
  specification_version: 3
137
119
  summary: in-silico calculations for mass spec data
138
120
  test_files:
121
+ - spec/ms/in_silico/digester_spec.rb
139
122
  - spec/ms/in_silico/fragment_spec.rb
140
123
  - spec/ms/in_silico/spectrum_spec.rb
141
- - spec/ms/in_silico/digester_spec.rb
142
124
  - spec/readme_spec.rb
143
125
  - spec/spec_helper.rb
144
126
  - test/ms/in_silico/digest_test.rb
data/.gitignore DELETED
@@ -1,6 +0,0 @@
1
- .DS_Store
2
- pkg/
3
- rdoc/
4
- backup/
5
- .*.swp
6
- *.gemspec