minimap2 0.2.30.1 → 0.2.30.2
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/README.md +11 -1
- data/lib/minimap2/ffi/constants.rb +1 -1
- data/lib/minimap2/ffi/functions.rb +1 -1
- data/lib/minimap2/version.rb +1 -1
- metadata +1 -1
checksums.yaml
CHANGED
|
@@ -1,7 +1,7 @@
|
|
|
1
1
|
---
|
|
2
2
|
SHA256:
|
|
3
|
-
metadata.gz:
|
|
4
|
-
data.tar.gz:
|
|
3
|
+
metadata.gz: 8528863219ede8de2b25b477d8258cca91aaafe7fcf6f34f3982d136cedb2bd3
|
|
4
|
+
data.tar.gz: 58c280e7262bd1d15f0d7d3306ed8fa08759279f24680f6265e8366f6358465d
|
|
5
5
|
SHA512:
|
|
6
|
-
metadata.gz:
|
|
7
|
-
data.tar.gz:
|
|
6
|
+
metadata.gz: bd3fd0229795796096f48a33683b23bad5005e0d77436338939b6332994727cd8bc6f0b29be15dc0ea05d7df57ebe703cf50bd319513cdb00943912f9a6f06b8
|
|
7
|
+
data.tar.gz: 1a7ecc6b032699c91c7d06156a6b64eecbf4905820f108f1a18cdabddc8cf938cc94af2346b888c8591b86cddf7892d4afcf6627571509fe67907e832f301106
|
data/README.md
CHANGED
|
@@ -11,10 +11,20 @@
|
|
|
11
11
|
|
|
12
12
|
## Installation
|
|
13
13
|
|
|
14
|
+
ruby-minimap2 bundles the Minimap2 C source code and builds it automatically during installation.
|
|
15
|
+
|
|
16
|
+
Just install the gem. Works on Linux, macOS, and Windows.
|
|
17
|
+
|
|
14
18
|
```
|
|
15
19
|
gem install minimap2
|
|
16
20
|
```
|
|
17
21
|
|
|
22
|
+
Show minimap2 version (check installation)
|
|
23
|
+
|
|
24
|
+
```sh
|
|
25
|
+
ruby -r minimap2 -e 'Minimap2.execute("--version")'
|
|
26
|
+
```
|
|
27
|
+
|
|
18
28
|
<details>
|
|
19
29
|
<summary><b>Compiling from source</b></summary>
|
|
20
30
|
|
|
@@ -190,7 +200,7 @@ If you need commit rights to ruby-minimap2 repository or want to get admin right
|
|
|
190
200
|
|
|
191
201
|
## License
|
|
192
202
|
|
|
193
|
-
[MIT License](
|
|
203
|
+
[MIT License](LICENSE.txt)
|
|
194
204
|
|
|
195
205
|
## Acknowledgements
|
|
196
206
|
|
|
@@ -39,7 +39,7 @@ module Minimap2
|
|
|
39
39
|
NO_INV = 0x200000000
|
|
40
40
|
NO_HASH_NAME = 0x400000000
|
|
41
41
|
SPLICE_OLD = 0x800000000
|
|
42
|
-
SECONDARY_SEQ = 0x1000000000 # output SEQ field for
|
|
42
|
+
SECONDARY_SEQ = 0x1000000000 # output SEQ field for secondary alignments using hard clipping
|
|
43
43
|
OUT_DS = 0x2000000000
|
|
44
44
|
WEAK_PAIRING = 0x4000000000
|
|
45
45
|
SR_RNA = 0x8000000000
|
|
@@ -130,7 +130,7 @@ module Minimap2
|
|
|
130
130
|
# void mm_map_frag(const mm_idx_t *mi, int n_segs, const int *qlens, const char **seqs, int *n_regs, mm_reg1_t **regs, mm_tbuf_t *b, const mm_mapopt_t *opt, const char *qname);
|
|
131
131
|
attach_function \
|
|
132
132
|
:mm_map_frag,
|
|
133
|
-
[Idx.by_ref, :int, :pointer, :pointer, :pointer, TBuf.by_ref, MapOpt.by_ref, :string],
|
|
133
|
+
[Idx.by_ref, :int, :pointer, :pointer, :pointer, :pointer, TBuf.by_ref, MapOpt.by_ref, :string],
|
|
134
134
|
:void
|
|
135
135
|
|
|
136
136
|
# int mm_map_file(const mm_idx_t *idx, const char *fn, const mm_mapopt_t *opt, int n_threads);
|
data/lib/minimap2/version.rb
CHANGED