minibwa 0.0.1 → 0.0.2

checksums.yaml

@@ -1,7 +1,7 @@
 ---
 SHA256:
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-  data.tar.gz: 85da4f46eceba36f840a89207b91ae34a5bac5825a8f02cdb0e92bce0d4a38cc
+  metadata.gz: 1edda6290bb47eb0a3d0845ee5221aa8926400069ffdb094f273a96c637771d1
+  data.tar.gz: f937061f758b0c151aedc9ab396fde98d4bea351b7931b603ec98d8307238658
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-  data.tar.gz: c3a4359e47da6b147e65c23afe0efb7407a04960c493cd8883dac9ca4a8b4edad7a766a1b225cf6aadf2f02f55643c1cd7f24f861f8f7294a8d6f4cb70c667c6
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+  data.tar.gz: 0cdc67a36b58a37510859b87443d721c7ecc1183cc0095786e02e737ab8289d0d8fd2e8ba429c97bbe0dd8297868b150c7279106fff293d8bf8fef19ed58eaad

data/ext/minibwa/compat/sys/mman.h

@@ -0,0 +1,18 @@
+#ifndef MINIBWA_WINDOWS_SYS_MMAN_H
+#define MINIBWA_WINDOWS_SYS_MMAN_H
+
+#include <stddef.h>
+#include <sys/types.h>
+
+#define PROT_READ 0x1
+#define MAP_SHARED 0x1
+#define MAP_FAILED ((void *)-1)
+
+void *minibwa_mmap(void *addr, size_t length, int prot, int flags, int fd,
+                   off_t offset);
+int minibwa_munmap(void *addr, size_t length);
+
+#define mmap minibwa_mmap
+#define munmap minibwa_munmap
+
+#endif

data/ext/minibwa/extconf.rb

@@ -46,6 +46,14 @@ sais = %w[libsais libsais64]
 
 binding_srcs = %w[minibwa mb_options mb_index mb_index_build mb_buffer mb_hit]
 
+# Upstream uses the POSIX mmap API to load indexes. Keep the vendored sources
+# untouched and provide that small API surface locally when building with
+# MinGW, where <sys/mman.h> is not available.
+if /mingw|mswin/i.match?(RUBY_PLATFORM)
+  binding_srcs << 'win_mman'
+  $INCFLAGS << ' -I$(srcdir)/compat'
+end
+
 $srcs = binding_srcs.map { |f| "#{f}.c" } +
         (core + ksw2 + sais).map { |f| "minibwa/#{f}.c" }
 $objs = $srcs.map { |f| "#{File.basename(f, '.c')}.o" }

data/ext/minibwa/win_mman.c

@@ -0,0 +1,52 @@
+#include <errno.h>
+#include <stdint.h>
+#include <windows.h>
+#include <io.h>
+
+#include "compat/sys/mman.h"
+
+void *
+minibwa_mmap(void *addr, size_t length, int prot, int flags, int fd,
+             off_t offset)
+{
+    HANDLE file;
+    HANDLE mapping;
+    void *view;
+    uint64_t map_offset;
+
+    (void)addr;
+    (void)prot;
+    (void)flags;
+
+    file = (HANDLE)_get_osfhandle(fd);
+    if (file == INVALID_HANDLE_VALUE) {
+        errno = EBADF;
+        return MAP_FAILED;
+    }
+
+    mapping = CreateFileMappingA(file, NULL, PAGE_READONLY, 0, 0, NULL);
+    if (mapping == NULL) {
+        errno = EINVAL;
+        return MAP_FAILED;
+    }
+
+    map_offset = (uint64_t)offset;
+    view = MapViewOfFile(mapping, FILE_MAP_READ, (DWORD)(map_offset >> 32),
+                         (DWORD)map_offset, length);
+    CloseHandle(mapping);
+    if (view == NULL) {
+        errno = EINVAL;
+        return MAP_FAILED;
+    }
+
+    return view;
+}
+
+int
+minibwa_munmap(void *addr, size_t length)
+{
+    (void)length;
+    if (UnmapViewOfFile(addr)) return 0;
+    errno = EINVAL;
+    return -1;
+}

data/lib/minibwa/version.rb

@@ -2,5 +2,5 @@
 
 module Minibwa
   # Gem version.
-  VERSION = '0.0.1'
+  VERSION = '0.0.2'
 end

metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: minibwa
 version: !ruby/object:Gem::Version
-  version: 0.0.1
+  version: 0.0.2
 platform: ruby
 authors:
 - kojix2
@@ -16,6 +16,7 @@ extra_rdoc_files: []
 files:
 - LICENSE.txt
 - README.md
+- ext/minibwa/compat/sys/mman.h
 - ext/minibwa/extconf.rb
 - ext/minibwa/mb_buffer.c
 - ext/minibwa/mb_hit.c
@@ -58,6 +59,7 @@ files:
 - ext/minibwa/minibwa/pe.c
 - ext/minibwa/minibwa/s2n-lite.h
 - ext/minibwa/minibwa/seed.c
+- ext/minibwa/win_mman.c
 - lib/minibwa.rb
 - lib/minibwa/hit.rb
 - lib/minibwa/index.rb
@@ -82,7 +84,7 @@ required_rubygems_version: !ruby/object:Gem::Requirement
     - !ruby/object:Gem::Version
       version: '0'
 requirements: []
-rubygems_version: 3.6.9
+rubygems_version: 4.0.16
 specification_version: 4
 summary: Ruby bindings for minibwa, a short-read aligner
 test_files: []