miga-base 1.4.2.0 → 1.4.2.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/lib/miga/version.rb +1 -1
- data/scripts/mytaxa.bash +3 -5
- data/scripts/mytaxa_scan.bash +3 -5
- data/utils/requirements.txt +1 -1
- metadata +1 -1
checksums.yaml
CHANGED
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@@ -1,7 +1,7 @@
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1
1
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---
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2
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SHA256:
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metadata.gz:
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4
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data.tar.gz:
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3
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metadata.gz: 2eb3548ca6e3ab2dbd8e4cffee3a72f12c3e1f51f54798633c18a7829812acc4
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4
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data.tar.gz: 4dff34634631b786c647229977eb994e6a94071dc2a6d043a62e4239ed921ca4
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SHA512:
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metadata.gz:
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7
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data.tar.gz:
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6
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metadata.gz: 55fd0a15cdf186a9a7643912330bf69242856e03713ddaebc7d3e18404d50cf7bba8e78da42c2263449409627d8e153aa2050cdb014439162dc57e0cc04e6d58
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7
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data.tar.gz: 87bc8bd8b7b990f0c686c2deea27a34af79f32f95a15eb3dd0e6d3561ab32ea72c4eea87a847854135178a0d39f4f57d60cfb561031ba1e873dc7f134c9a3f0b
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data/lib/miga/version.rb
CHANGED
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@@ -12,7 +12,7 @@ module MiGA
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# - String indicating release status:
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# - rc* release candidate, not released as gem
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# - [0-9]+ stable release, released as gem
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-
VERSION = [1.4, 2,
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VERSION = [1.4, 2, 1].freeze
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##
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# Nickname for the current major.minor version.
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data/scripts/mytaxa.bash
CHANGED
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@@ -27,14 +27,12 @@ else
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"no such file or directory" >&2
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exit 1
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fi
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if [[ ! -d "$MT/db" ]] ; then
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echo "Cannot locate the MyTaxa index: $MT/db
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"no such file or directory" >&2
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if [[ ! -d "$MT/db" && ! -d "$MYTAXA_DB" ]] ; then
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echo "Cannot locate the MyTaxa index: $MT/db" >&2
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exit 1
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fi
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if [[ ! -d "$MT/utils" ]] ; then
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echo "Cannot locate the MyTaxa utilities: $MT/utils
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"no such file or directory" >&2
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echo "Cannot locate the MyTaxa utilities: $MT/utils" >&2
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exit 1
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fi
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data/scripts/mytaxa_scan.bash
CHANGED
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@@ -26,14 +26,12 @@ else
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"no such file or directory" >&2
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exit 1
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fi
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if [[ ! -d "$MT/db" ]] ; then
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echo "Cannot locate the MyTaxa index: $MT/db
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"no such file or directory" >&2
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if [[ ! -d "$MT/db" && ! -d "$MYTAXA_DB" ]] ; then
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echo "Cannot locate the MyTaxa index: $MT/db" >&2
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exit 1
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fi
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if [[ ! -d "$MT/utils" ]] ; then
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echo "Cannot locate the MyTaxa utilities: $MT/utils
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"no such file or directory" >&2
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echo "Cannot locate the MyTaxa utilities: $MT/utils" >&2
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exit 1
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fi
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data/utils/requirements.txt
CHANGED
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@@ -18,6 +18,6 @@ Seqtk (reads) seqtk https://github.com/lh3/seqtk
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Fastp (reads) fastp https://github.com/OpenGene/fastp
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SPADES (reads) spades.py https://ablab.github.io/spades/ Required version: 3+
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Temurin (rdp) java https://adoptium.net/ Any Java VM would work
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-
MyTaxa (mytaxa) MyTaxa http://
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MyTaxa (mytaxa) MyTaxa http://github.com/bio-miga/mytaxa Required version: 1.2+
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Krona (mytaxa) ktImportText https://github.com/marbl/Krona/wiki
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tRNAscan-SE tRNAscan-SE http://trna.ucsc.edu/tRNAscan-SE/ Required version: 2+
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