miga-base 1.3.9.3 → 1.3.9.4
Sign up to get free protection for your applications and to get access to all the features.
- checksums.yaml +4 -4
- data/lib/miga/remote_dataset/download.rb +4 -3
- data/lib/miga/version.rb +1 -1
- metadata +5 -5
checksums.yaml
CHANGED
|
@@ -1,7 +1,7 @@
|
|
|
1
1
|
---
|
|
2
2
|
SHA256:
|
|
3
|
-
metadata.gz:
|
|
4
|
-
data.tar.gz:
|
|
3
|
+
metadata.gz: 436166fe9bbc76b69f014879610440e9646261f1a06dbc134418b79fa3da9b08
|
|
4
|
+
data.tar.gz: fb835c9bfa4829a3ac1c5ae8bdc1c5998cd8b9c4a55d3988538b9c24b2f4329f
|
|
5
5
|
SHA512:
|
|
6
|
-
metadata.gz:
|
|
7
|
-
data.tar.gz:
|
|
6
|
+
metadata.gz: 77e76a0dea664321aad58b4eee310d91cd9fa34c6ae0339451c83d2d169cbf9c160ed6c469401d0155280a28612ae8cde47a0c00be739371986f64621e44ef68
|
|
7
|
+
data.tar.gz: cdece24eb38d804b729c3c7f9018f7f3e835db258a59abe1ce560baf8bce29223a957f8498b96d6a647994361903d2d8179f2c6e6890451923dd44c5ae6cbcd8
|
|
@@ -66,7 +66,7 @@ class MiGA::RemoteDataset
|
|
|
66
66
|
:zip, nil, opts[:extra], opts[:obj]
|
|
67
67
|
)
|
|
68
68
|
zip_tmp = Tempfile.new('asm.zip')
|
|
69
|
-
zip_tmp.
|
|
69
|
+
zip_tmp.print(zipped)
|
|
70
70
|
zip_tmp.close
|
|
71
71
|
|
|
72
72
|
o = ''
|
|
@@ -76,14 +76,15 @@ class MiGA::RemoteDataset
|
|
|
76
76
|
if entry.file? && entry.name =~ /_genomic\.fna$/
|
|
77
77
|
DEBUG "Extracting: #{entry.name}"
|
|
78
78
|
entry.get_input_stream do |ifh|
|
|
79
|
-
cont = ifh.read
|
|
80
|
-
ofh&.
|
|
79
|
+
cont = MiGA::MiGA.normalize_encoding(ifh.read) + "\n"
|
|
80
|
+
ofh&.print(cont)
|
|
81
81
|
o += cont
|
|
82
82
|
end
|
|
83
83
|
end
|
|
84
84
|
end
|
|
85
85
|
end
|
|
86
86
|
ofh&.close
|
|
87
|
+
File.unlink(zip_tmp.path)
|
|
87
88
|
o
|
|
88
89
|
end
|
|
89
90
|
|
data/lib/miga/version.rb
CHANGED
|
@@ -12,7 +12,7 @@ module MiGA
|
|
|
12
12
|
# - String indicating release status:
|
|
13
13
|
# - rc* release candidate, not released as gem
|
|
14
14
|
# - [0-9]+ stable release, released as gem
|
|
15
|
-
VERSION = [1.3, 9,
|
|
15
|
+
VERSION = [1.3, 9, 4].freeze
|
|
16
16
|
|
|
17
17
|
##
|
|
18
18
|
# Nickname for the current major.minor version.
|
metadata
CHANGED
|
@@ -1,7 +1,7 @@
|
|
|
1
1
|
--- !ruby/object:Gem::Specification
|
|
2
2
|
name: miga-base
|
|
3
3
|
version: !ruby/object:Gem::Version
|
|
4
|
-
version: 1.3.9.
|
|
4
|
+
version: 1.3.9.4
|
|
5
5
|
platform: ruby
|
|
6
6
|
authors:
|
|
7
7
|
- Luis M. Rodriguez-R
|
|
@@ -84,16 +84,16 @@ dependencies:
|
|
|
84
84
|
name: rubyzip
|
|
85
85
|
requirement: !ruby/object:Gem::Requirement
|
|
86
86
|
requirements:
|
|
87
|
-
- - "
|
|
87
|
+
- - "~>"
|
|
88
88
|
- !ruby/object:Gem::Version
|
|
89
|
-
version: '
|
|
89
|
+
version: '2.3'
|
|
90
90
|
type: :runtime
|
|
91
91
|
prerelease: false
|
|
92
92
|
version_requirements: !ruby/object:Gem::Requirement
|
|
93
93
|
requirements:
|
|
94
|
-
- - "
|
|
94
|
+
- - "~>"
|
|
95
95
|
- !ruby/object:Gem::Version
|
|
96
|
-
version: '
|
|
96
|
+
version: '2.3'
|
|
97
97
|
- !ruby/object:Gem::Dependency
|
|
98
98
|
name: rake
|
|
99
99
|
requirement: !ruby/object:Gem::Requirement
|