miga-base 1.3.4.3 → 1.3.5.0

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@@ -141,12 +141,16 @@ module MiGA::Result::Stats
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  # Determine qualitative range
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  stats[:quality] = stats[:completeness][0] - stats[:contamination][0] * 5
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  source.metadata[:quality] =
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- case stats[:quality]
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- when 80..100; :excellent
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- when 50..80; :high
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- when 20..50; :intermediate
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- else; :low
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+ if stats[:completeness][0] >= 90 && stats[:contamination][0] <= 5
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+ :excellent # Finished or High-quality draft*
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+ elsif stats[:completeness][0] >= 50 && stats[:contamination][0] <= 10
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+ :high # Medium-quality draft*
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+ elsif stats[:quality] >= 25
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+ :intermediate # Low-quality draft* but sufficient for classification
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+ else
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+ :low # Low-quality draft* and insufficient for classification
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  end
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+ # * Bowers et al 2017, DOI: 10.1038/nbt.3893
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  source.save
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  # Inactivate low-quality datasets
data/lib/miga/version.rb CHANGED
@@ -12,7 +12,7 @@ module MiGA
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  # - String indicating release status:
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  # - rc* release candidate, not released as gem
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  # - [0-9]+ stable release, released as gem
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- VERSION = [1.3, 4, 3].freeze
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+ VERSION = [1.3, 5, 0].freeze
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  ##
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  # Nickname for the current major.minor version.
@@ -20,7 +20,7 @@ module MiGA
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  ##
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  # Date of the current gem relese.
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- VERSION_DATE = Date.new(2023, 4, 20)
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+ VERSION_DATE = Date.new(2023, 4, 21)
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  ##
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  # References of MiGA
metadata CHANGED
@@ -1,14 +1,14 @@
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  --- !ruby/object:Gem::Specification
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  name: miga-base
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  version: !ruby/object:Gem::Version
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- version: 1.3.4.3
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+ version: 1.3.5.0
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  platform: ruby
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  authors:
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  - Luis M. Rodriguez-R
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  autorequire:
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  bindir: bin
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  cert_chain: []
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- date: 2023-04-20 00:00:00.000000000 Z
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+ date: 2023-04-21 00:00:00.000000000 Z
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  dependencies:
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  - !ruby/object:Gem::Dependency
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  name: daemons