miga-base 1.3.4.3 → 1.3.5.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/lib/miga/result/stats.rb +9 -5
- data/lib/miga/version.rb +2 -2
- metadata +2 -2
checksums.yaml
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@@ -1,7 +1,7 @@
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---
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SHA256:
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metadata.gz:
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data.tar.gz:
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metadata.gz: d17244b326441f224e4626b53702018fd0f3915d44e16e9be939a70dd86ceefa
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data.tar.gz: 8f6c7544ab57957dbfeb53230e56ba9e7eda37c7bab2fea538ee17d9f54fd9f7
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SHA512:
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metadata.gz:
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data.tar.gz:
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metadata.gz: bd77962a43caa04c72d01ddbe251fb02650f0f003c55b2b13a44ac1affb77b52535e5dd5fd7713c387f5a7bafdd8839255f2cd8d82be8d4c025b562a7beabfbd
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data.tar.gz: b0cd50e25aa16ce2c64202daa5bbbb256e3f83742513ac984715f1b7c96f7297887856a2853ac6ec49dd43fe63b5c37cd96e83f8047ebcd32fdbc47addf892f7
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data/lib/miga/result/stats.rb
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@@ -141,12 +141,16 @@ module MiGA::Result::Stats
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# Determine qualitative range
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stats[:quality] = stats[:completeness][0] - stats[:contamination][0] * 5
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source.metadata[:quality] =
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if stats[:completeness][0] >= 90 && stats[:contamination][0] <= 5
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:excellent # Finished or High-quality draft*
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elsif stats[:completeness][0] >= 50 && stats[:contamination][0] <= 10
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:high # Medium-quality draft*
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elsif stats[:quality] >= 25
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:intermediate # Low-quality draft* but sufficient for classification
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else
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:low # Low-quality draft* and insufficient for classification
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end
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# * Bowers et al 2017, DOI: 10.1038/nbt.3893
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source.save
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# Inactivate low-quality datasets
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data/lib/miga/version.rb
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@@ -12,7 +12,7 @@ module MiGA
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# - String indicating release status:
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# - rc* release candidate, not released as gem
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# - [0-9]+ stable release, released as gem
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VERSION = [1.3,
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VERSION = [1.3, 5, 0].freeze
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##
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# Nickname for the current major.minor version.
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@@ -20,7 +20,7 @@ module MiGA
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##
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# Date of the current gem relese.
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VERSION_DATE = Date.new(2023, 4,
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VERSION_DATE = Date.new(2023, 4, 21)
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##
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# References of MiGA
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metadata
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@@ -1,14 +1,14 @@
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--- !ruby/object:Gem::Specification
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name: miga-base
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version: !ruby/object:Gem::Version
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version: 1.3.
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version: 1.3.5.0
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platform: ruby
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authors:
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- Luis M. Rodriguez-R
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autorequire:
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bindir: bin
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cert_chain: []
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date: 2023-04-
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date: 2023-04-21 00:00:00.000000000 Z
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dependencies:
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- !ruby/object:Gem::Dependency
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name: daemons
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