miga-base 1.3.4.3 → 1.3.5.0

checksums.yaml

@@ -1,7 +1,7 @@
 ---
 SHA256:
-  metadata.gz: '04760780c4ec69edaeb55949c2f15933c7d9ecc1c620bbeca28a01679f957db3'
-  data.tar.gz: 885e191e8c77a7e117d1e22875f6c90615f7cc001d0215930fd690022a88fb0d
+  metadata.gz: d17244b326441f224e4626b53702018fd0f3915d44e16e9be939a70dd86ceefa
+  data.tar.gz: 8f6c7544ab57957dbfeb53230e56ba9e7eda37c7bab2fea538ee17d9f54fd9f7
 SHA512:
-  metadata.gz: 2b47739ea450c9217119ad61317559e7429f87b04531ad624555538885207ffbb054715d18f60757a41f5c7816cb3cdc06b4b81a378b509ac3c1518452ba02ec
-  data.tar.gz: a3c08caf1d98ea5de2c7b137004c126a5b1541403cacd8ab88d0fa3da8a0617fe380448370f3e038bd70d3a4342b20d6476a94a5062c6aec9615838f694c5e6a
+  metadata.gz: bd77962a43caa04c72d01ddbe251fb02650f0f003c55b2b13a44ac1affb77b52535e5dd5fd7713c387f5a7bafdd8839255f2cd8d82be8d4c025b562a7beabfbd
+  data.tar.gz: b0cd50e25aa16ce2c64202daa5bbbb256e3f83742513ac984715f1b7c96f7297887856a2853ac6ec49dd43fe63b5c37cd96e83f8047ebcd32fdbc47addf892f7

data/lib/miga/result/stats.rb

@@ -141,12 +141,16 @@ module MiGA::Result::Stats
       # Determine qualitative range
       stats[:quality] = stats[:completeness][0] - stats[:contamination][0] * 5
       source.metadata[:quality] =
-        case stats[:quality]
-        when 80..100; :excellent
-        when 50..80; :high
-        when 20..50; :intermediate
-        else; :low
+        if stats[:completeness][0] >= 90 && stats[:contamination][0] <= 5
+          :excellent    # Finished or High-quality draft*
+        elsif stats[:completeness][0] >= 50 && stats[:contamination][0] <= 10
+          :high         # Medium-quality draft*
+        elsif stats[:quality] >= 25
+          :intermediate # Low-quality draft* but sufficient for classification
+        else
+          :low          # Low-quality draft* and insufficient for classification
         end
+        # * Bowers et al 2017, DOI: 10.1038/nbt.3893
       source.save
 
       # Inactivate low-quality datasets

data/lib/miga/version.rb

@@ -12,7 +12,7 @@ module MiGA
   # - String indicating release status:
   #   - rc* release candidate, not released as gem
   #   - [0-9]+ stable release, released as gem
-  VERSION = [1.3, 4, 3].freeze
+  VERSION = [1.3, 5, 0].freeze
 
   ##
   # Nickname for the current major.minor version.
@@ -20,7 +20,7 @@ module MiGA
 
   ##
   # Date of the current gem relese.
-  VERSION_DATE = Date.new(2023, 4, 20)
+  VERSION_DATE = Date.new(2023, 4, 21)
 
   ##
   # References of MiGA

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: miga-base
 version: !ruby/object:Gem::Version
-  version: 1.3.4.3
+  version: 1.3.5.0
 platform: ruby
 authors:
 - Luis M. Rodriguez-R
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2023-04-20 00:00:00.000000000 Z
+date: 2023-04-21 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: daemons