miga-base 1.3.22.5 → 1.3.22.6
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/lib/miga/cli/action/download/seqcode.rb +5 -3
- data/lib/miga/version.rb +2 -2
- data/scripts/read_quality.bash +4 -0
- data/test/remote_dataset_test.rb +4 -2
- metadata +2 -2
checksums.yaml
CHANGED
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@@ -1,7 +1,7 @@
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1
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---
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SHA256:
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-
metadata.gz:
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4
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-
data.tar.gz:
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3
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metadata.gz: b7617c312b68875e84d349bc0613493cc5423da5930c7c4639646c968743f8c7
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4
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data.tar.gz: 8cc072f053bf244889f928ce842e79311eff9deb5dc36fed9d42702536b5cdfb
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5
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SHA512:
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-
metadata.gz:
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data.tar.gz:
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6
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metadata.gz: 200520c0b8a9a4a13d22db354e8f1d9cfe5876fbca2ab4f6ea454f8638d9dc10d6898b027002ed50f003ddf898311242b3321e5c77836546b45e807bc858f7f9
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7
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data.tar.gz: 493c26112d46fa6f83783129be0d1a0832b147ac9476f00da6abf5678b67da08bd64ab2e6a92f56124d1bed85de2c9bd626ca60b0f96a809674ef58e4d964ac2
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@@ -36,9 +36,11 @@ module MiGA::Cli::Action::Download::Seqcode
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36
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total_pages = doc.dig(:response, :total_pages)
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doc[:values].each do |name|
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-
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-
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-
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+
nt = name[:nomenclatural_type]
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next unless nt && nt[:class] == 'Genome'
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+
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acc = nt.values.first
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db = nt.keys.first
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next unless %i[assembly nuccore].include?(db) # No INSDC genome, ignore
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classif = name[:classification] || {}
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data/lib/miga/version.rb
CHANGED
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@@ -12,7 +12,7 @@ module MiGA
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# - String indicating release status:
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# - rc* release candidate, not released as gem
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# - [0-9]+ stable release, released as gem
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-
VERSION = [1.3, 22,
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VERSION = [1.3, 22, 6].freeze
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##
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# Nickname for the current major.minor version.
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@@ -20,7 +20,7 @@ module MiGA
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##
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# Date of the current gem relese.
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-
VERSION_DATE = Date.new(2025,
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+
VERSION_DATE = Date.new(2025, 5, 19)
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##
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# References of MiGA
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data/scripts/read_quality.bash
CHANGED
data/test/remote_dataset_test.rb
CHANGED
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@@ -34,13 +34,15 @@ class RemoteDatasetTest < Test::Unit::TestCase
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assert_equal(
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'ns:ncbi k:Pararnavirae p:Artverviricota c:Revtraviricetes ' \
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'o:Ortervirales f:Retroviridae g:Lentivirus ' \
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's:
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's:Lentivirus_humimdef2 ' \
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'ds:Human_immunodeficiency_virus_2',
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tx.to_s, msg
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)
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assert_equal(
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'ns:ncbi d: k:Pararnavirae p:Artverviricota c:Revtraviricetes ' \
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'o:Ortervirales f:Retroviridae g:Lentivirus ' \
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's:
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's:Lentivirus_humimdef2 ssp: str: ' \
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'ds:Human_immunodeficiency_virus_2',
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tx.to_s(true), msg
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)
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assert_equal('ncbi', tx.namespace, msg)
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metadata
CHANGED
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@@ -1,14 +1,14 @@
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1
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--- !ruby/object:Gem::Specification
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name: miga-base
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version: !ruby/object:Gem::Version
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version: 1.3.22.
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version: 1.3.22.6
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platform: ruby
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authors:
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- Luis M. Rodriguez-R
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autorequire:
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bindir: bin
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cert_chain: []
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date: 2025-
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date: 2025-05-19 00:00:00.000000000 Z
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dependencies:
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- !ruby/object:Gem::Dependency
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name: daemons
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