miga-base 1.3.17.0 → 1.3.17.1
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- checksums.yaml +4 -4
- data/lib/miga/version.rb +2 -2
- data/scripts/distances.bash +1 -1
- data/scripts/taxonomy.bash +13 -2
- metadata +2 -2
checksums.yaml
CHANGED
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@@ -1,7 +1,7 @@
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1
1
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---
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2
2
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SHA256:
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3
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-
metadata.gz:
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4
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-
data.tar.gz:
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3
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+
metadata.gz: eea046a55335341dc02e4fd47292b1d3a4ece6e2e96fc1450b4c9484fb19c878
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4
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+
data.tar.gz: ddf4e24b843afa0a046c4673710c4de785f850335764972604e89e3b4c0874ce
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5
5
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SHA512:
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6
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-
metadata.gz:
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7
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-
data.tar.gz:
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6
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+
metadata.gz: a399bd2504f89dd8a4beb8220a9e525bbfa3b22bbe96fee02735ac63db91aa5c3f312ab7ad162c77680948a54b7d8e03c372637d89b27c9a085e4d243eb34f55
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|
7
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+
data.tar.gz: 2e4da0abbe25f7c7f845c2fd64ba2ee2adbf0912ba05a616205f5ef655f7bae72a50f0a6d2bc3831e6d3046437fe04a9147567f6d80290d3867eba69e4470f88
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data/lib/miga/version.rb
CHANGED
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@@ -12,7 +12,7 @@ module MiGA
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|
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12
12
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# - String indicating release status:
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13
13
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# - rc* release candidate, not released as gem
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14
14
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# - [0-9]+ stable release, released as gem
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15
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-
VERSION = [1.3, 17,
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|
15
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+
VERSION = [1.3, 17, 1].freeze
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16
16
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17
17
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##
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18
18
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# Nickname for the current major.minor version.
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@@ -20,7 +20,7 @@ module MiGA
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20
20
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21
21
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##
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22
22
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# Date of the current gem relese.
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23
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-
VERSION_DATE = Date.new(2024,
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23
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+
VERSION_DATE = Date.new(2024, 7, 11)
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|
24
24
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25
25
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##
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26
26
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# References of MiGA
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data/scripts/distances.bash
CHANGED
data/scripts/taxonomy.bash
CHANGED
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@@ -16,6 +16,7 @@ ruby -I "$MIGA/lib" \
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16
16
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"$MIGA/utils/distances.rb" "$PROJECT" "$DATASET" run_taxonomy=1
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17
17
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18
18
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# Finalize
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19
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+
refproject=no
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19
20
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fastaai=no
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20
21
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aai=no
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21
22
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ani=no
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@@ -24,7 +25,9 @@ blat=no
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|
|
24
25
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diamond=no
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25
26
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fastani=no
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26
27
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REF_PROJECT=$(miga option -P "$PROJECT" -k ref_project)
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|
27
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-
if [[ -
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|
28
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+
if [[ -d "$REF_PROJECT" ]] ; then
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|
29
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+
refproject=yes
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|
30
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+
|
|
28
31
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case $(miga option -P "$REF_PROJECT" -k haai_p) in
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|
29
32
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fastaai)
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|
30
33
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fastaai=yes
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@@ -70,10 +73,18 @@ cat <<VERSIONS \
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|
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70
73
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| miga add_result -P "$PROJECT" -D "$DATASET" -r "$SCRIPT" -f --stdin-versions
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|
71
74
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=> MiGA
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|
72
75
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$(miga --version)
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|
76
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+
$(
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|
77
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+
if [[ "$refproject" == "yes" ]] ; then
|
|
78
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+
echo "=> Reference Project"
|
|
79
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+
miga about -P "$REF_PROJECT" -m name
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|
80
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+
echo "=> Reference Project Release"
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|
81
|
+
miga about -P "$REF_PROJECT" -m release
|
|
82
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+
fi
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|
83
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+
)
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|
73
84
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$(
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|
74
85
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if [[ "$fastaai" == "yes" ]] ; then
|
|
75
86
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echo "=> FastAAI"
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|
76
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-
fastaai version 2>&1 | perl -pe 's/.*=//'
|
|
87
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+
fastaai version 2>&1 | tail -n 1 | perl -pe 's/.*=//'
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|
77
88
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fi
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|
78
89
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)
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|
79
90
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$(
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metadata
CHANGED
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@@ -1,14 +1,14 @@
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1
1
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--- !ruby/object:Gem::Specification
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2
2
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name: miga-base
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|
3
3
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version: !ruby/object:Gem::Version
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|
4
|
-
version: 1.3.17.
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|
4
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+
version: 1.3.17.1
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|
5
5
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platform: ruby
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6
6
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authors:
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7
7
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- Luis M. Rodriguez-R
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|
8
8
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autorequire:
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|
9
9
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bindir: bin
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|
10
10
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cert_chain: []
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|
11
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-
date: 2024-
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|
11
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+
date: 2024-07-11 00:00:00.000000000 Z
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|
12
12
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dependencies:
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|
13
13
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- !ruby/object:Gem::Dependency
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|
14
14
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name: daemons
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