miga-base 1.3.16.0 → 1.3.17.0

checksums.yaml

@@ -1,7 +1,7 @@
 ---
 SHA256:
-  metadata.gz: e9831118f9d6abd893207d1d902f78187db3cb2cbecfefcd9695388963433937
-  data.tar.gz: 1363e1b9b96c017be4cd3034aba69cc5c1c7a0ef9bbc05bcf6c0a0c5f926b366
+  metadata.gz: e33b9da20704a768d31e9b826676bdcb637a7636ec434fdef4af7eb653744f35
+  data.tar.gz: 28970fcb3723a6304c11d834f8861b37ede641fba77ddd9a2d4950b608fcb6a0
 SHA512:
-  metadata.gz: 871c33305ebefcad9097c804956429d73b92459df2ab5f7494d635b2303f40737540c4d7d610dcc528e8c39339589341eedaddae04e62d691e5b64ba254a90ed
-  data.tar.gz: b37a9a0c2f13cdc3f0db9ca7e9dd411aaf093a9b14980107dd656d9e56298e474791720f87c8bec0444e2fe1a2b0513836d4d02421484e1482cfc69435e82ed3
+  metadata.gz: 9ff04d00d7e1d4af7b007bbf27e59b35a57678715cf89651befcab48deec95389e1c3ffb330bfae62cd8720bde752f36a9f513f37e410d1ab60158381de700f7
+  data.tar.gz: 33c6aaa9c088b8bfed16c1ffd765fe36d4b797bd01d4145cda989e50faf2dea4ffe93d632cde163fef1e64d4493fc9f164b85770337439c75f59d6a652b89feb

data/lib/miga/version.rb

@@ -12,7 +12,7 @@ module MiGA
   # - String indicating release status:
   #   - rc* release candidate, not released as gem
   #   - [0-9]+ stable release, released as gem
-  VERSION = [1.3, 16, 0].freeze
+  VERSION = [1.3, 17, 0].freeze
 
   ##
   # Nickname for the current major.minor version.
@@ -20,7 +20,7 @@ module MiGA
 
   ##
   # Date of the current gem relese.
-  VERSION_DATE = Date.new(2024, 6, 23)
+  VERSION_DATE = Date.new(2024, 6, 28)
 
   ##
   # References of MiGA

data/scripts/ssu.bash

@@ -46,16 +46,17 @@ if [[ -s $fa ]] ; then
       >> "${DATASET}.rdp.tsv"
   fi
 
-  # tRNAscan-SE
-  dom_opt="-$(echo "$d" | perl -pe 's/(\S).*/$1/')"
-  out="${DATASET}.trna.txt"
-  # `echo O` is to avoid a hang from a pre-existing output file.
-  # This is better than pre-checking (and removing), because it avoids
-  # the (unlikely) scenario of a file racing (e.g., a file created right
-  # before tRNAscan-SE starts, or a `rm` failure).
-  #
-  # The trailing `|| true` is to treat failure as non-fatal
-  echo O | tRNAscan-SE $dom_opt -o "${DATASET}.trna.txt" -q "$fa" || true
+  # tRNAscan-SE (only if non-multi)
+  if miga ls -P "$PROJECT" -D "$DATASET" --no-multi --silent ; then
+    dom_opt="-$(echo "$d" | perl -pe 's/(\S).*/$1/')"
+    # `echo O` is to avoid a hang from a pre-existing output file.
+    # This is better than pre-checking (and removing), because it avoids
+    # the (unlikely) scenario of a file racing (e.g., a file created right
+    # before tRNAscan-SE starts, or a `rm` failure).
+    #
+    # The trailing `|| true` is to treat failure as non-fatal
+    echo O | tRNAscan-SE $dom_opt -o "${DATASET}.trna.txt" -q "$fa" || true
+  fi
 
   # Gzip
   for x in gff ssu.all.fa rdp.tsv trna.txt ; do

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: miga-base
 version: !ruby/object:Gem::Version
-  version: 1.3.16.0
+  version: 1.3.17.0
 platform: ruby
 authors:
 - Luis M. Rodriguez-R
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2024-06-23 00:00:00.000000000 Z
+date: 2024-06-28 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: daemons