miga-base 1.3.15.12 → 1.3.16.0
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- checksums.yaml +4 -4
- data/lib/miga/cli/action/doctor/operations.rb +18 -0
- data/lib/miga/cli/action/doctor.rb +1 -0
- data/lib/miga/version.rb +1 -1
- metadata +1 -1
checksums.yaml
CHANGED
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@@ -1,7 +1,7 @@
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1
1
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---
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2
2
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SHA256:
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3
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-
metadata.gz:
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4
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-
data.tar.gz:
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3
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+
metadata.gz: e9831118f9d6abd893207d1d902f78187db3cb2cbecfefcd9695388963433937
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4
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+
data.tar.gz: 1363e1b9b96c017be4cd3034aba69cc5c1c7a0ef9bbc05bcf6c0a0c5f926b366
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5
5
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SHA512:
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6
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-
metadata.gz:
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|
7
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-
data.tar.gz:
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6
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+
metadata.gz: 871c33305ebefcad9097c804956429d73b92459df2ab5f7494d635b2303f40737540c4d7d610dcc528e8c39339589341eedaddae04e62d691e5b64ba254a90ed
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|
7
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+
data.tar.gz: b37a9a0c2f13cdc3f0db9ca7e9dd411aaf093a9b14980107dd656d9e56298e474791720f87c8bec0444e2fe1a2b0513836d4d02421484e1482cfc69435e82ed3
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@@ -65,6 +65,24 @@ module MiGA::Cli::Action::Doctor::Operations
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65
65
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cli.say
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66
66
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end
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67
67
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68
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+
##
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69
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+
# Perform md-files operation with MiGA::Cli +cli+
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|
70
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+
def check_mdfiles(cli)
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71
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+
cli.say 'Looking for unregistered files in the metadata folder'
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72
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+
md = File.join(cli.load_project.path, 'metadata')
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73
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+
Dir.each_child(md) do |file|
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74
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+
expected_ds = File.basename(file, '.json')
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|
75
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+
next if cli.load_project.dataset_names.include?(expected_ds)
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|
76
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+
file_path = File.join(md, file)
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|
77
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+
if Dir.exist?(file_path)
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|
78
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+
cli.say " > Ignoring directory: #{file}"
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|
79
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+
else
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|
80
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+
cli.say " > Removing: #{file}"
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|
81
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+
File.unlink(File.join(md, file))
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|
82
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+
end
|
|
83
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+
end
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|
84
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+
end
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85
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+
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68
86
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##
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69
87
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# Perform cds operation with MiGA::Cli +cli+
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70
88
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def check_cds(cli)
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@@ -49,6 +49,7 @@ class MiGA::Cli::Action::Doctor < MiGA::Cli::Action
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49
49
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# TODO Implement this check:
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50
50
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# refdb: ['ref-db', 'Check index format of reference databases'],
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51
51
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status: ['status', 'Update metadata status of all datasets'],
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52
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+
mdfiles:['md-files', 'Remove unregistered files in metadata'],
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52
53
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db: ['databases', 'Check integrity of database files'],
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53
54
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dist: ['distances', 'Check distance summary tables'],
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54
55
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bidir: ['bidirectional', 'Check distances are bidirectional'],
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data/lib/miga/version.rb
CHANGED
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@@ -12,7 +12,7 @@ module MiGA
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12
12
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# - String indicating release status:
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13
13
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# - rc* release candidate, not released as gem
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14
14
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# - [0-9]+ stable release, released as gem
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15
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-
VERSION = [1.3,
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|
15
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+
VERSION = [1.3, 16, 0].freeze
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|
16
16
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17
17
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##
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|
18
18
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# Nickname for the current major.minor version.
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