miga-base 1.3.15.12 → 1.3.16.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/lib/miga/cli/action/doctor/operations.rb +18 -0
- data/lib/miga/cli/action/doctor.rb +1 -0
- data/lib/miga/version.rb +1 -1
- metadata +1 -1
checksums.yaml
CHANGED
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@@ -1,7 +1,7 @@
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1
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---
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SHA256:
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metadata.gz:
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data.tar.gz:
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metadata.gz: e9831118f9d6abd893207d1d902f78187db3cb2cbecfefcd9695388963433937
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4
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data.tar.gz: 1363e1b9b96c017be4cd3034aba69cc5c1c7a0ef9bbc05bcf6c0a0c5f926b366
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SHA512:
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metadata.gz:
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data.tar.gz:
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metadata.gz: 871c33305ebefcad9097c804956429d73b92459df2ab5f7494d635b2303f40737540c4d7d610dcc528e8c39339589341eedaddae04e62d691e5b64ba254a90ed
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7
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data.tar.gz: b37a9a0c2f13cdc3f0db9ca7e9dd411aaf093a9b14980107dd656d9e56298e474791720f87c8bec0444e2fe1a2b0513836d4d02421484e1482cfc69435e82ed3
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@@ -65,6 +65,24 @@ module MiGA::Cli::Action::Doctor::Operations
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cli.say
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end
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##
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# Perform md-files operation with MiGA::Cli +cli+
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def check_mdfiles(cli)
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cli.say 'Looking for unregistered files in the metadata folder'
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md = File.join(cli.load_project.path, 'metadata')
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Dir.each_child(md) do |file|
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expected_ds = File.basename(file, '.json')
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next if cli.load_project.dataset_names.include?(expected_ds)
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file_path = File.join(md, file)
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if Dir.exist?(file_path)
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cli.say " > Ignoring directory: #{file}"
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else
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cli.say " > Removing: #{file}"
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File.unlink(File.join(md, file))
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end
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end
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end
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##
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# Perform cds operation with MiGA::Cli +cli+
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def check_cds(cli)
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@@ -49,6 +49,7 @@ class MiGA::Cli::Action::Doctor < MiGA::Cli::Action
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# TODO Implement this check:
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# refdb: ['ref-db', 'Check index format of reference databases'],
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status: ['status', 'Update metadata status of all datasets'],
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mdfiles:['md-files', 'Remove unregistered files in metadata'],
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db: ['databases', 'Check integrity of database files'],
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dist: ['distances', 'Check distance summary tables'],
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bidir: ['bidirectional', 'Check distances are bidirectional'],
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data/lib/miga/version.rb
CHANGED
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@@ -12,7 +12,7 @@ module MiGA
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# - String indicating release status:
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# - rc* release candidate, not released as gem
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# - [0-9]+ stable release, released as gem
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VERSION = [1.3,
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VERSION = [1.3, 16, 0].freeze
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##
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# Nickname for the current major.minor version.
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