miga-base 1.2.8.2 → 1.2.9.0

checksums.yaml

@@ -1,7 +1,7 @@
 ---
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-  data.tar.gz: 2f811051db25da424bdf9f9c89390a4e0cac33fb3c6330e255b369d171e8a4b9
+  metadata.gz: '091cbb355cb05e9f9b78a84222ce575755e4f5fc134b7b86c3543a40297776ce'
+  data.tar.gz: 04b636a84a89030128b4a267a8a0c49013161fc753c7e7f5fe29b767f4095ee4
 SHA512:
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-  data.tar.gz: ef734003e57818b155347ce591e9683420ecfa00cd5b4398c0ed1485fc23108a74d9bd91980d6a2bb4c2481c3d1027805b9083fb9add802b5a30f140926c996d
+  metadata.gz: b85165b51ec14d4fb3d78eb7945938b253e53d1aafee6593252dc54bd8202bc5709812cbbc22cc1d01a1b351f4843769e77aab1f92447a68a0ebe604e0adf150
+  data.tar.gz: e7edbc1aeec3119d69503fef00be330783eef5afb9e03dc24077ed87e596d1c7f8bac325e7d45caacda7924bcec442d5e0dbc6a90e5cb506ae7b77f73f06840f

data/lib/miga/cli/action/init.rb

@@ -52,6 +52,12 @@ class MiGA::Cli::Action::Init < MiGA::Cli::Action
         'Type of daemon launcher, one of: bash, ssh, qsub, msub, slurm',
         "By default: interactive (#{cli[:dtype]} if --auto)"
       ) { |v| cli[:dtype] = v.to_sym }
+      %w[R ruby python].each do |bin|
+        opt.on(
+          "--path-to-#{bin} STRING",
+          "Use this path to #{bin} instead of testing for executables"
+        ) { |v| cli[:"path_to_#{bin}"] = v }
+      end
       opt.on(
         '--ask-all',
         'Ask for the location of all software',
@@ -130,8 +136,13 @@ class MiGA::Cli::Action::Init < MiGA::Cli::Action
       fh.each_line do |ln|
         r = define_software(ln) or next
         cli.print "Testing #{r[0]}#{" (#{r[3]})" if r[3]}... "
-        path = find_software(r[1])
-        paths[r[1]] = File.expand_path(r[1], path).shellescape
+        if cli[:"path_to_#{r[1]}"]
+          paths[r[1]] = cli[:"path_to_#{r[1]}"]
+          cli.puts "user-provided: #{paths[r[1]]}"
+        else
+          path = find_software(r[1])
+          paths[r[1]] = File.expand_path(r[1], path).shellescape
+        end
       end
     end
     rc_fh.puts 'export PATH="$MIGA_PATH$PATH"'

data/lib/miga/version.rb

@@ -12,7 +12,7 @@ module MiGA
   # - String indicating release status:
   #   - rc* release candidate, not released as gem
   #   - [0-9]+ stable release, released as gem
-  VERSION = [1.2, 8, 2].freeze
+  VERSION = [1.2, 9, 0].freeze
 
   ##
   # Nickname for the current major.minor version.
@@ -20,7 +20,7 @@ module MiGA
 
   ##
   # Date of the current gem relese.
-  VERSION_DATE = Date.new(2022, 8, 14)
+  VERSION_DATE = Date.new(2022, 10, 15)
 
   ##
   # References of MiGA

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: miga-base
 version: !ruby/object:Gem::Version
-  version: 1.2.8.2
+  version: 1.2.9.0
 platform: ruby
 authors:
 - Luis M. Rodriguez-R
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2022-08-14 00:00:00.000000000 Z
+date: 2022-10-15 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: daemons