miga-base 1.2.2.3 → 1.2.3.0

checksums.yaml

@@ -1,7 +1,7 @@
 ---
 SHA256:
-  metadata.gz: 3b3fd16e90667560b5cba41046eb92613187279fd7194d1825cc3dee9690273d
-  data.tar.gz: 84043b09c234b825ba0b89ca057b4301a97d5234a87282583516abffbc377e05
+  metadata.gz: 94374ec5cc66632861a18159a8adf69591ce9d3d5249de5baacd636d7519bb9e
+  data.tar.gz: '0395e8ac95c1770b2ee859a4bc59d0ba806f1298cc271f4ff0b64a4c7363897d'
 SHA512:
-  metadata.gz: 2e0d76139cfd93f77a91ee266bd596d74e8881da94fb750d97b03bb6c491424e75af208177687525d284ae3fe96e77f1e373f0bdce0583445a4070f3ed09cac0
-  data.tar.gz: 5bd98ea9eb89bcb4af4b74128c2d84ac1f32047322bb2177f7d47543efcc4122a4f8c23f463e8ae8291c8e6dff753182a39fd11fbdf42679975e5b2dba0ca571
+  metadata.gz: 69667e9595a04b972865911b5c2e4204f879d8c8f7fee6cd68e5c4e7a84662d9c9d4018a4f533cbbb33eada796fc26faa4797b3c0c016d4ef34fc8c1d13138e2
+  data.tar.gz: 86aae6d82404516d2cbd8812eef539e00690fdf47ccecf7205bd4e4f301dc11f415f630111a40f22459a448579b4251698906e7e0380eb1631a1fae05915e183

data/lib/miga/cli/action/wf.rb

@@ -69,15 +69,20 @@ module MiGA::Cli::Action::Wf
       'By default: ~/.miga_daemon.json'
     ) { |v| cli[:daemon_json] = v }
     opt.on(
-      '-j', '--jobs INT',
+      '-j', '--jobs INT', Integer,
       'Number of parallel jobs to execute',
       'By default controlled by the daemon configuration (maxjobs)'
-    ) { |v| cli[:jobs] = v.to_i }
+    ) { |v| cli[:jobs] = v }
     opt.on(
-      '-t', '--threads INT',
+      '-t', '--threads INT', Integer,
       'Number of CPUs to use per job',
       'By default controlled by the daemon configuration (ppn)'
-    ) { |v| cli[:threads] = v.to_i }
+    ) { |v| cli[:threads] = v }
+    opt.on(
+      '--threads-project INT', Integer,
+      'Number of CPUs to use per project-wide job',
+      'By default controlled by the daemon configuration (ppn_project or ppn)'
+    ) { |v| cli[:threads_project] = v }
   end
 
   def opts_for_wf_distances(opt)
@@ -184,9 +189,10 @@ module MiGA::Cli::Action::Wf
 
   def run_daemon
     cmd  = ['daemon', 'run', '-P', cli[:outdir], '--shutdown-when-done']
-    cmd += ['--json', cli[:daemon_json]] unless cli[:daemon_json].nil?
-    cmd += ['--max-jobs', cli[:jobs]] unless cli[:jobs].nil?
-    cmd += ['--ppn', cli[:threads]] unless cli[:threads].nil?
+    cmd += ['--json', cli[:daemon_json]] if cli[:daemon_json]
+    cmd += ['--max-jobs', cli[:jobs]] if cli[:jobs]
+    cmd += ['--ppn', cli[:threads]] if cli[:threads]
+    cmd += ['--ppn-project', cli[:threads_project]] if cli[:threads_project]
     cmd += ['--debug', MiGA::MiGA.debug_trace? ? '2' : '1'] if MiGA::MiGA.debug?
     cwd = Dir.pwd
     call_cli(cmd)

data/lib/miga/version.rb

@@ -12,7 +12,7 @@ module MiGA
   # - String indicating release status:
   #   - rc* release candidate, not released as gem
   #   - [0-9]+ stable release, released as gem
-  VERSION = [1.2, 2, 3].freeze
+  VERSION = [1.2, 3, 0].freeze
 
   ##
   # Nickname for the current major.minor version.
@@ -20,7 +20,7 @@ module MiGA
 
   ##
   # Date of the current gem relese.
-  VERSION_DATE = Date.new(2022, 2, 9)
+  VERSION_DATE = Date.new(2022, 2, 17)
 
   ##
   # References of MiGA

data/utils/index_metadata.rb

@@ -19,6 +19,7 @@ end
 p.each_dataset do |d|
   next unless d.ref? && d.active?
 
+  db.execute('BEGIN TRANSACTION')
   searchable(db, d, :name, d.name)
   d.metadata.each do |k, v|
     next if [:created, :updated].include? k
@@ -26,4 +27,5 @@ p.each_dataset do |d|
     v = v.sorted_ranks.map { |r| r[1] }.join(' ') if k == :tax
     searchable(db, d, k, v)
   end
+  db.execute('COMMIT')
 end

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: miga-base
 version: !ruby/object:Gem::Version
-  version: 1.2.2.3
+  version: 1.2.3.0
 platform: ruby
 authors:
 - Luis M. Rodriguez-R
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2022-02-09 00:00:00.000000000 Z
+date: 2022-02-17 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: daemons