miga-base 1.2.14.1 → 1.2.14.2

checksums.yaml

@@ -1,7 +1,7 @@
 ---
 SHA256:
-  metadata.gz: ae083dbb06efae44846887887e0706b0436340aeb7524846478a68867c602b67
-  data.tar.gz: 78bb2440e073e4d55fe6a439dfa1eddb25c2fa4aad7d06000384de20092ab710
+  metadata.gz: b8a1b62d1125f54550d8cf801c46924abb79085005b8fa4abe732e9347b1fa82
+  data.tar.gz: baa4a96d604fd649147f47aafeaea038310b8ec588edb8055f7d511842ba3f6b
 SHA512:
-  metadata.gz: 185667da9d0e7dc3849dc851e2f2c6829901bfaee7975c7b249630b660cc41aa40988fcc9e27c3937a6ad533df3135e4d2f2115e7f16e8bd3f25ed9e0533d9f7
-  data.tar.gz: 77ec658cbfcecda4b32e7a0110b53953220f649f79f4a112c23c510511a4752869af9e3894452335d827311a9b8fedd0c5072860ecff035f1c018aa346c9894f
+  metadata.gz: 1ab3bed5edbd0e9ef513c731c9d28999bdb483547376446746157b58bddc92a9ddde7e0cdfd7766351f11e69f1e11df8e2ccf94815ab95108842caa43f6fdd29
+  data.tar.gz: b3401886ca9139d3ed3a9c19188a1b171254c0d0c1c21d63beffb71b497713dac59ba5fb0176bf2340bc48595640dc6dadfba7881aa7c993cd82894b0679c8a6

data/lib/miga/cli/action/download/base.rb

@@ -9,9 +9,9 @@ end
 module MiGA::Cli::Action::Download::Base
   def cli_filters(opt)
     opt.on(
-      '--blacklist PATH',
-      'A file with dataset names to blacklist'
-    ) { |v| cli[:blacklist] = v }
+      '--exclude PATH',
+      'A file with dataset names to exclude'
+    ) { |v| cli[:exclude] = v }
     cli.opt_flag(opt, 'dry', 'Do not download or save the datasets')
     opt.on(
       '--ignore-until STRING',
@@ -49,10 +49,10 @@ module MiGA::Cli::Action::Download::Base
     ) { |v| cli[:remote_list] = v }
   end
 
-  def discard_blacklisted(ds)
-    unless cli[:blacklist].nil?
-      cli.say "Discarding datasets in #{cli[:blacklist]}"
-      File.readlines(cli[:blacklist])
+  def discard_excluded(ds)
+    unless cli[:exclude].nil?
+      cli.say "Discarding datasets in #{cli[:exclude]}"
+      File.readlines(cli[:exclude])
           .select { |i| i !~ /^#/ }
           .map(&:chomp)
           .each { |i| ds.delete i }

data/lib/miga/cli/action/gtdb_get.rb

@@ -42,7 +42,7 @@ class MiGA::Cli::Action::GtdbGet < MiGA::Cli::Action
     sanitize_cli
     p = cli.load_project
     ds = remote_list
-    ds = discard_blacklisted(ds)
+    ds = discard_excluded(ds)
     ds = impose_limit(ds)
     d, downloaded = download_entries(ds, p)
 

data/lib/miga/cli/action/ncbi_get.rb

@@ -44,7 +44,7 @@ class MiGA::Cli::Action::NcbiGet < MiGA::Cli::Action
     sanitize_cli
     p = cli.load_project
     ds = remote_list
-    ds = discard_blacklisted(ds)
+    ds = discard_excluded(ds)
     ds = impose_limit(ds)
     d, downloaded = download_entries(ds, p)
 

data/lib/miga/version.rb

@@ -12,7 +12,7 @@ module MiGA
   # - String indicating release status:
   #   - rc* release candidate, not released as gem
   #   - [0-9]+ stable release, released as gem
-  VERSION = [1.2, 14, 1].freeze
+  VERSION = [1.2, 14, 2].freeze
 
   ##
   # Nickname for the current major.minor version.

metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: miga-base
 version: !ruby/object:Gem::Version
-  version: 1.2.14.1
+  version: 1.2.14.2
 platform: ruby
 authors:
 - Luis M. Rodriguez-R