miga-base 0.5.2.0 → 0.5.2.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/lib/miga/version.rb +2 -2
- data/scripts/essential_genes.bash +6 -6
- data/utils/enveomics/Pipelines/assembly.pbs/FastA.N50.pl +1 -1
- data/utils/enveomics/Pipelines/assembly.pbs/FastA.filterN.pl +1 -1
- data/utils/enveomics/Pipelines/assembly.pbs/FastA.length.pl +1 -1
- data/utils/enveomics/Pipelines/blast.pbs/FastA.split.pl +1 -1
- data/utils/enveomics/Scripts/lib/enveomics.R +1 -1
- metadata +3 -4
checksums.yaml
CHANGED
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@@ -1,7 +1,7 @@
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1
1
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---
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2
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SHA256:
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3
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-
metadata.gz:
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4
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-
data.tar.gz:
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3
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+
metadata.gz: 4e63c0be19f4c1deb225b622ffae0d4745484c4e5e9e14433b588986bf6f7a5a
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4
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+
data.tar.gz: 609dfcbd7207f1a2a63dc76f9674357182734d19eaea1e26bb857286b2932e05
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SHA512:
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-
metadata.gz:
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7
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data.tar.gz:
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6
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metadata.gz: fcc03a3382fbc0510773298e708ae42ebf0b16a565e5feedf6f31b732a86d1538cc6545428c69f7dd553aaaa79530b018f130d487091a45db07d6dc242790be3
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7
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data.tar.gz: 3bebfccfff429d53b131e8f8716e9af51c61abd686267d496d1e0f71524edc85d91623e1b86d7202257edafaaf8d0089957fd87224524a7ef65e73f604d96173
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data/lib/miga/version.rb
CHANGED
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@@ -10,7 +10,7 @@ module MiGA
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# - Float representing the major.minor version.
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# - Integer representing gem releases of the current version.
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# - Integer representing minor changes that require new version number.
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-
VERSION = [0.5, 2,
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+
VERSION = [0.5, 2, 1]
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##
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# Nickname for the current major.minor version.
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@@ -18,7 +18,7 @@ module MiGA
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##
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# Date of the current gem release.
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-
VERSION_DATE = Date.new(2020, 1,
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+
VERSION_DATE = Date.new(2020, 1, 8)
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##
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# Reference of MiGA.
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@@ -26,15 +26,15 @@ TYPE=$(miga ls -P "$PROJECT" -D "$DATASET" \
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--metadata "type" | awk '{print $2}')
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COLL=$(miga about -P "$PROJECT" -m ess_coll)
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[[ "$COLL" == "?" ]] && COLL=dupont_2012
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CMD="HMM.essential.rb \
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-i '$FAA' -o '${DATASET}.ess.faa' -m '${DATASET}.ess/' \
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-t '$CORES' -r '$DATASET' --collection '$COLL'"
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if [[ "$TYPE" == "metagenome" || "$TYPE" == "virome" ]] ; then
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-
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FLAGS="--metagenome"
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else
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-
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FLAGS="--alignments ${DATASET}.ess/proteins.aln"
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fi
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-
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HMM.essential.rb \
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-i "$FAA" -o "${DATASET}.ess.faa" -m "${DATASET}.ess/" \
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-t "$CORES" -r "$DATASET" --collection "$COLL" $FLAGS \
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> "${DATASET}.ess/log"
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# Reduce files
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if exists "$DATASET".ess/*.faa ; then
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@@ -1 +1 @@
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1
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-
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+
../../Scripts/FastA.N50.pl
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@@ -1 +1 @@
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1
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-
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+
../../Scripts/FastA.filterN.pl
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@@ -1 +1 @@
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1
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-
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../../Scripts/FastA.length.pl
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@@ -1 +1 @@
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1
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-
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1
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+
../../Scripts/FastA.split.pl
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@@ -1 +1 @@
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1
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-
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1
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+
../../enveomics.R
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metadata
CHANGED
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@@ -1,14 +1,14 @@
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1
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--- !ruby/object:Gem::Specification
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name: miga-base
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version: !ruby/object:Gem::Version
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version: 0.5.2.
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version: 0.5.2.1
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platform: ruby
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authors:
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- Luis M. Rodriguez-R
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autorequire:
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bindir: bin
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cert_chain: []
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date: 2020-01-
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date: 2020-01-08 00:00:00.000000000 Z
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dependencies:
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- !ruby/object:Gem::Dependency
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name: daemons
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@@ -515,8 +515,7 @@ required_rubygems_version: !ruby/object:Gem::Requirement
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- !ruby/object:Gem::Version
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version: '0'
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requirements: []
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-
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rubygems_version: 2.7.6
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rubygems_version: 3.0.3
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signing_key:
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specification_version: 4
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summary: MiGA
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