miga-base 0.3.0.5 → 0.3.0.6
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/lib/miga/dataset_result.rb +4 -1
- data/lib/miga/version.rb +2 -2
- data/utils/enveomics/Pipelines/assembly.pbs/FastA.N50.pl +1 -0
- data/utils/enveomics/Pipelines/assembly.pbs/FastA.filterN.pl +1 -0
- data/utils/enveomics/Pipelines/assembly.pbs/FastA.length.pl +1 -0
- data/utils/enveomics/Pipelines/blast.pbs/FastA.split.pl +1 -0
- data/utils/enveomics/Scripts/lib/enveomics.R +1 -0
- metadata +165 -158
- data/utils/enveomics/Pipelines/assembly.pbs/FastA.N50.pl +0 -56
- data/utils/enveomics/Pipelines/assembly.pbs/FastA.filterN.pl +0 -60
- data/utils/enveomics/Pipelines/assembly.pbs/FastA.length.pl +0 -38
- data/utils/enveomics/Pipelines/blast.pbs/FastA.split.pl +0 -55
checksums.yaml
CHANGED
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@@ -1,7 +1,7 @@
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---
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SHA1:
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-
metadata.gz:
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data.tar.gz:
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metadata.gz: e86b0a3fd7e0ef5b3d2ac6c82e0d6e44b595dfa7
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data.tar.gz: d0c718124aaee78e75f52db4679a29958e7df193
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SHA512:
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metadata.gz:
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data.tar.gz:
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metadata.gz: a1ff8aee53f8d3c2c10124cb6de6d363b6c8d15e842b1454b025ffc7a90580c4b06db573b0fc0290b802d4d0ba1344d952f41aa266141303f4dbb4502d20368e
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7
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data.tar.gz: d84243fe1316b9d475fa43fe7559a712a5533b012d69268b1e92e4e47e6f75ed0c603dd07b3e2350fa9040c8188c1524250a92677a2bf534b2425602d9d6b6ba
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data/lib/miga/dataset_result.rb
CHANGED
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@@ -148,7 +148,10 @@ module MiGA::DatasetResult
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result_files_exist?(base, ".nomytaxa.txt")
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r = MiGA::Result.new("#{base}.json")
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add_files_to_ds_result(r, name, mytaxa:".mytaxa", blast:".blast",
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-
mytaxain:".mytaxain", nomytaxa:".nomytaxa.txt"
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mytaxain:".mytaxain", nomytaxa:".nomytaxa.txt",
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species:".mytaxa.Species.txt", genus:".mytaxa.Genus.txt",
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phylum:".mytaxa.Phylum.txt", innominate:".mytaxa.innominate",
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kronain:".mytaxa.krona", krona:".html")
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else
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MiGA::Result.new("#{base}.json")
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end
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data/lib/miga/version.rb
CHANGED
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@@ -10,7 +10,7 @@ module MiGA
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# - Float representing the major.minor version.
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# - Integer representing gem releases of the current version.
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# - Integer representing minor changes that require new version number.
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VERSION = [0.3, 0,
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VERSION = [0.3, 0, 6]
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##
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# Nickname for the current major.minor version.
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##
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# Date of the current gem release.
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VERSION_DATE = Date.new(2017,
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VERSION_DATE = Date.new(2017, 8, 24)
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##
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# Reference of MiGA.
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@@ -0,0 +1 @@
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utils/enveomics/Pipelines/assembly.pbs/../../Scripts/FastA.N50.pl
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@@ -0,0 +1 @@
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utils/enveomics/Pipelines/assembly.pbs/../../Scripts/FastA.filterN.pl
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@@ -0,0 +1 @@
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utils/enveomics/Pipelines/assembly.pbs/../../Scripts/FastA.length.pl
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@@ -0,0 +1 @@
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utils/enveomics/Pipelines/blast.pbs/../../Scripts/FastA.split.pl
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@@ -0,0 +1 @@
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utils/enveomics/Scripts/lib/../../enveomics.R
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metadata
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@@ -1,103 +1,109 @@
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--- !ruby/object:Gem::Specification
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name: miga-base
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version: !ruby/object:Gem::Version
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version: 0.3.0.
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version: 0.3.0.6
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platform: ruby
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authors:
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- Luis M. Rodriguez-R
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autorequire:
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bindir: bin
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cert_chain: []
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date: 2017-
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date: 2017-08-24 00:00:00.000000000 Z
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dependencies:
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- !ruby/object:Gem::Dependency
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name: rest-client
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requirement: !ruby/object:Gem::Requirement
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requirements:
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- - ~>
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- - "~>"
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- !ruby/object:Gem::Version
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version: '1.7'
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type: :runtime
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prerelease: false
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version_requirements: !ruby/object:Gem::Requirement
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requirements:
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- - ~>
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- - "~>"
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- !ruby/object:Gem::Version
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version: '1.7'
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- !ruby/object:Gem::Dependency
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name: daemons
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requirement: !ruby/object:Gem::Requirement
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requirements:
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- - "~>"
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version: '1.2'
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- -
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- - ">="
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- !ruby/object:Gem::Version
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version: 1.2.4
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type: :runtime
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prerelease: false
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version_requirements: !ruby/object:Gem::Requirement
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requirements:
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- - ~>
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- - "~>"
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version: '1.2'
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- -
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- - ">="
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- !ruby/object:Gem::Version
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version: 1.2.4
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- !ruby/object:Gem::Dependency
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name: json
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requirement: !ruby/object:Gem::Requirement
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requirements:
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- -
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- - ">"
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version: '1.8'
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- - "<"
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- !ruby/object:Gem::Version
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version: '3'
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type: :runtime
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prerelease: false
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version_requirements: !ruby/object:Gem::Requirement
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requirements:
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- -
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version: '1.8'
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- - "<"
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- !ruby/object:Gem::Version
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version: '3'
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- !ruby/object:Gem::Dependency
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name: sqlite3
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requirement: !ruby/object:Gem::Requirement
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requirements:
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version: '1.3'
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type: :runtime
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prerelease: false
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version_requirements: !ruby/object:Gem::Requirement
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requirements:
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- !ruby/object:Gem::Version
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version: '1.3'
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- !ruby/object:Gem::Dependency
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name: rake
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requirement: !ruby/object:Gem::Requirement
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requirements:
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- !ruby/object:Gem::Version
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version: '11'
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type: :development
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prerelease: false
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version_requirements: !ruby/object:Gem::Requirement
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requirements:
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version: '11'
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name: test-unit
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requirement: !ruby/object:Gem::Requirement
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requirements:
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version: '3'
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type: :development
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prerelease: false
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version_requirements: !ruby/object:Gem::Requirement
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requirements:
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version: '3'
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description: Microbial Genomes Atlas
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extra_rdoc_files:
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- README.md
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files:
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- Gemfile
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- LICENSE
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- README.md
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- Rakefile
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- actions/about.rb
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- actions/add.rb
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- actions/add_result.rb
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- actions/daemon.rb
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- actions/date.rb
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- actions/files.rb
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- actions/find.rb
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- actions/get.rb
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- actions/init.rb
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- actions/ln.rb
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- actions/ls.rb
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- actions/new.rb
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- actions/plugins.rb
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- actions/rm.rb
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- actions/run.rb
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- actions/stats.rb
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- actions/tax_dist.rb
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- actions/tax_index.rb
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- actions/tax_set.rb
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- actions/tax_test.rb
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- bin/miga
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- lib/miga.rb
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- lib/miga/_data/aai-intax.tsv.gz
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- lib/miga/_data/aai-novel.tsv.gz
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- lib/miga/common.rb
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- lib/miga/daemon.rb
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- lib/miga/dataset.rb
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- lib/miga/tax_index.rb
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- lib/miga/taxonomy.rb
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- lib/miga/version.rb
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- lib/miga.rb
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- test/common_test.rb
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- test/daemon_test.rb
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- test/dataset_test.rb
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- test/metadata_test.rb
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- test/project_test.rb
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- test/remote_dataset_test.rb
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- test/tax_index_test.rb
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- test/taxonomy_test.rb
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- test/test_helper.rb
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- lib/miga/_data/aai-intax.tsv.gz
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- lib/miga/_data/aai-novel.tsv.gz
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- scripts/_distances_functions.bash
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- scripts/_distances_noref_nomulti.bash
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- scripts/_distances_ref_nomulti.bash
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- scripts/subclades.bash
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- scripts/trimmed_fasta.bash
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- scripts/trimmed_reads.bash
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- test/common_test.rb
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- test/daemon_test.rb
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- test/dataset_test.rb
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- test/metadata_test.rb
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- test/project_test.rb
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- test/remote_dataset_test.rb
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- test/tax_index_test.rb
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- test/taxonomy_test.rb
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- test/test_helper.rb
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- utils/adapters.fa
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- utils/core-pan-plot.R
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- utils/enveomics/build_enveomics_r.bash
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- utils/enveomics/enveomics.R/data/growth.curves.rda
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- utils/enveomics/enveomics.R/data/phyla.counts.rda
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- utils/enveomics/enveomics.R/DESCRIPTION
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- utils/enveomics/enveomics.R/man/enve.__prune.iter.Rd
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- utils/enveomics/enveomics.R/man/enve.__prune.reduce.Rd
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- utils/enveomics/enveomics.R/man/enve.__tribs.Rd
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- utils/enveomics/enveomics.R/man/enve.barplot.Rd
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- utils/enveomics/enveomics.R/man/enve.cliopts.Rd
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- utils/enveomics/enveomics.R/man/enve.col.alpha.Rd
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- utils/enveomics/enveomics.R/man/enve.col2alpha.Rd
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- utils/enveomics/enveomics.R/man/enve.df2dist.group.Rd
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- utils/enveomics/enveomics.R/man/enve.recplot2.__counts.Rd
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- utils/enveomics/enveomics.R/man/enve.recplot2.__findPeak.Rd
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- utils/enveomics/enveomics.R/man/enve.recplot2.__findPeaks.Rd
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- utils/enveomics/enveomics.R/man/enve.recplot2.__peakHist.Rd
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- utils/enveomics/enveomics.R/man/enve.recplot2.__whichClosestPeak.Rd
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- utils/enveomics/enveomics.R/man/enve.recplot2.changeCutoff.Rd
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- utils/enveomics/enveomics.R/man/enve.recplot2.corePeak.Rd
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- utils/enveomics/enveomics.R/man/enve.recplot2.extractWindows.Rd
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- utils/enveomics/enveomics.R/man/enve.recplot2.findPeaks.Rd
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- utils/enveomics/enveomics.R/man/enve.recplot2.peak-class.Rd
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- utils/enveomics/enveomics.R/man/enve.recplot2.Rd
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- utils/enveomics/enveomics.R/man/enve.TRIBS-class.Rd
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- utils/enveomics/enveomics.R/man/enve.TRIBS.merge.Rd
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- utils/enveomics/enveomics.R/man/enve.tribs.Rd
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- utils/enveomics/enveomics.R/R/recplot2.R
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- utils/enveomics/enveomics.R/R/tribs.R
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- utils/enveomics/enveomics.R/R/utils.R
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- utils/enveomics/enveomics.R/README.md
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- utils/enveomics/enveomics.R/data/growth.curves.rda
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- utils/enveomics/enveomics.R/data/phyla.counts.rda
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- utils/enveomics/enveomics.R/man/enve.GrowthCurve-class.Rd
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- utils/enveomics/enveomics.R/man/enve.TRIBS-class.Rd
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- utils/enveomics/enveomics.R/man/enve.TRIBS.merge.Rd
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- utils/enveomics/enveomics.R/man/enve.TRIBStest-class.Rd
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- utils/enveomics/enveomics.R/man/enve.__prune.iter.Rd
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- utils/enveomics/enveomics.R/man/enve.__prune.reduce.Rd
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- utils/enveomics/enveomics.R/man/enve.__tribs.Rd
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- utils/enveomics/enveomics.R/man/enve.barplot.Rd
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- utils/enveomics/enveomics.R/man/enve.cliopts.Rd
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- utils/enveomics/enveomics.R/man/enve.col.alpha.Rd
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- utils/enveomics/enveomics.R/man/enve.col2alpha.Rd
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- utils/enveomics/enveomics.R/man/enve.df2dist.Rd
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- utils/enveomics/enveomics.R/man/enve.df2dist.group.Rd
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+
- utils/enveomics/enveomics.R/man/enve.df2dist.list.Rd
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+
- utils/enveomics/enveomics.R/man/enve.growthcurve.Rd
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- utils/enveomics/enveomics.R/man/enve.prune.dist.Rd
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- utils/enveomics/enveomics.R/man/enve.recplot.Rd
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+
- utils/enveomics/enveomics.R/man/enve.recplot2-class.Rd
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+
- utils/enveomics/enveomics.R/man/enve.recplot2.Rd
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+
- utils/enveomics/enveomics.R/man/enve.recplot2.__counts.Rd
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408
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+
- utils/enveomics/enveomics.R/man/enve.recplot2.__findPeak.Rd
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409
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+
- utils/enveomics/enveomics.R/man/enve.recplot2.__findPeaks.Rd
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410
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+
- utils/enveomics/enveomics.R/man/enve.recplot2.__peakHist.Rd
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+
- utils/enveomics/enveomics.R/man/enve.recplot2.__whichClosestPeak.Rd
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+
- utils/enveomics/enveomics.R/man/enve.recplot2.changeCutoff.Rd
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- utils/enveomics/enveomics.R/man/enve.recplot2.corePeak.Rd
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+
- utils/enveomics/enveomics.R/man/enve.recplot2.extractWindows.Rd
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415
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+
- utils/enveomics/enveomics.R/man/enve.recplot2.findPeaks.Rd
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416
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+
- utils/enveomics/enveomics.R/man/enve.recplot2.peak-class.Rd
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- utils/enveomics/enveomics.R/man/enve.tribs.Rd
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- utils/enveomics/enveomics.R/man/enve.tribs.test.Rd
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- utils/enveomics/enveomics.R/man/enveomics.R-package.Rd
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- utils/enveomics/enveomics.R/man/growth.curves.Rd
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- utils/enveomics/enveomics.R/man/phyla.counts.Rd
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- utils/enveomics/enveomics.R/man/plot.enve.GrowthCurve.Rd
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- utils/enveomics/enveomics.R/man/plot.enve.TRIBS.Rd
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- utils/enveomics/enveomics.R/man/plot.enve.TRIBStest.Rd
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- utils/enveomics/enveomics.R/man/plot.enve.recplot2.Rd
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- utils/enveomics/enveomics.R/man/summary.enve.GrowthCurve.Rd
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- utils/enveomics/enveomics.R/man/summary.enve.TRIBS.Rd
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- utils/enveomics/enveomics.R/man/summary.enve.TRIBStest.Rd
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- utils/enveomics/enveomics.R/man/z$-methods.Rd
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- utils/enveomics/globals.mk
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- utils/enveomics/manifest.json
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- utils/index_metadata.rb
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- actions/tax_dist.rb
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- actions/tax_index.rb
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- actions/tax_set.rb
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- actions/tax_test.rb
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- README.md
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- LICENSE
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homepage: http://enve-omics.ce.gatech.edu/miga
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licenses:
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- Artistic-2.0
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@@ -439,25 +446,25 @@ post_install_message:
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rdoc_options:
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- lib
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- --main
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- "--main"
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- README.md
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- --title
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- "--title"
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- MiGA
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require_paths:
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- lib
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required_ruby_version: !ruby/object:Gem::Requirement
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requirements:
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- -
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- - ">="
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- !ruby/object:Gem::Version
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version: '1.9'
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required_rubygems_version: !ruby/object:Gem::Requirement
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requirements:
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-
- -
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- - ">="
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version: '0'
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requirements: []
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rubyforge_project:
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|
-
rubygems_version: 2.
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+
rubygems_version: 2.6.11
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|
signing_key:
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|
specification_version: 4
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summary: MiGA
|
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@@ -1,56 +0,0 @@
|
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1
|
-
#!/usr/bin/env perl
|
|
2
|
-
#
|
|
3
|
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# @author: Luis M. Rodriguez-R <lmrodriguezr at gmail dot com>
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|
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|
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# @update: Oct 07 2015
|
|
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|
-
# @license: artistic license 2.0
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-
#
|
|
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|
-
use strict;
|
|
8
|
-
use warnings;
|
|
9
|
-
use List::Util qw/sum min max/;
|
|
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|
-
|
|
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|
-
my ($seqs, $minlen, $n__) = @ARGV;
|
|
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|
-
$seqs or die "
|
|
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|
-
Description:
|
|
14
|
-
Calculates the N50 value of a set of sequences. Alternatively, it
|
|
15
|
-
can calculate other N** values. It also calculates the total number
|
|
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|
-
of sequences and the total added length.
|
|
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|
-
|
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-
Usage:
|
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|
-
$0 seqs.fa[ minlen[ **]]
|
|
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|
-
|
|
21
|
-
seqs.fa A FastA file containing the sequences.
|
|
22
|
-
minlen (optional) The minimum length to take into consideration.
|
|
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|
-
By default: 0.
|
|
24
|
-
** Value N** to calculate. By default: 50 (N50).
|
|
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|
-
";
|
|
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|
-
$minlen ||= 0;
|
|
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|
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$n__ ||= 50;
|
|
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|
-
|
|
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|
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my @len = ();
|
|
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|
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open SEQ, "<", $seqs or die "Cannot open file: $seqs: $!\n";
|
|
31
|
-
while(<SEQ>){
|
|
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|
-
if(/^>/){
|
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|
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push @len, 0;
|
|
34
|
-
}else{
|
|
35
|
-
next if /^;/;
|
|
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|
-
chomp;
|
|
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|
-
s/\W//g;
|
|
38
|
-
$len[-1]+=length $_;
|
|
39
|
-
}
|
|
40
|
-
}
|
|
41
|
-
close SEQ;
|
|
42
|
-
@len = sort { $a <=> $b } map { $_>=$minlen?$_:() } @len;
|
|
43
|
-
my $tot = (sum(@len) || 0);
|
|
44
|
-
|
|
45
|
-
my $thr = $n__*$tot/100;
|
|
46
|
-
my $pos = 0;
|
|
47
|
-
for(@len){
|
|
48
|
-
$pos+= $_;
|
|
49
|
-
if($pos>=$thr){
|
|
50
|
-
print "N$n__: $_\n";
|
|
51
|
-
last;
|
|
52
|
-
}
|
|
53
|
-
}
|
|
54
|
-
print "Sequences: ".scalar(@len)."\n";
|
|
55
|
-
print "Total length: $tot\n";
|
|
56
|
-
|
|
@@ -1,60 +0,0 @@
|
|
|
1
|
-
#!/usr/bin/env perl
|
|
2
|
-
#
|
|
3
|
-
# @author Luis M. Rodriguez-R
|
|
4
|
-
# @update Oct-07-2015
|
|
5
|
-
# @license artistic license 2.0
|
|
6
|
-
#
|
|
7
|
-
|
|
8
|
-
use warnings;
|
|
9
|
-
use strict;
|
|
10
|
-
|
|
11
|
-
my($file, $content, $stretch) = @ARGV;
|
|
12
|
-
$file or die <<HELP
|
|
13
|
-
|
|
14
|
-
Description:
|
|
15
|
-
Filter sequences by N-content and presence of long homopolymers.
|
|
16
|
-
Usage:
|
|
17
|
-
$0 sequences.fa [content [stretch]] > filtered.fa
|
|
18
|
-
Where:
|
|
19
|
-
sequences.fa Input file in FastA format
|
|
20
|
-
content A number between 0 and 1 indicating the maximum proportion of Ns
|
|
21
|
-
(1 to turn off, 0.5 by default)
|
|
22
|
-
stretch A number indicating the maximum number of consecutive identical
|
|
23
|
-
nucleotides allowed (0 to turn off, 100 by default)
|
|
24
|
-
filtered.fa Filtered set of sequences.
|
|
25
|
-
|
|
26
|
-
HELP
|
|
27
|
-
;
|
|
28
|
-
($content ||= 0.5)+=0;
|
|
29
|
-
($stretch ||= 100)+=0;
|
|
30
|
-
|
|
31
|
-
my $good = 0;
|
|
32
|
-
my $N = 0;
|
|
33
|
-
|
|
34
|
-
FASTA: {
|
|
35
|
-
local $/ = "\n>";
|
|
36
|
-
open FILE, "<", $file or die "I can not open the file: $file: $!\n";
|
|
37
|
-
SEQ: while(<FILE>){
|
|
38
|
-
$N++;
|
|
39
|
-
s/^;.*//gm;
|
|
40
|
-
s/>//g;
|
|
41
|
-
my($n,$s) = split /\n/, $_, 2;
|
|
42
|
-
(my $clean = $s) =~ s/[^ACTGN]//g;
|
|
43
|
-
if($content < 1){
|
|
44
|
-
(my $Ns = $clean) =~ s/[^N]//g;
|
|
45
|
-
next SEQ if length($Ns)>length($clean)*$content;
|
|
46
|
-
}
|
|
47
|
-
if($stretch > 0){
|
|
48
|
-
for my $nuc (qw(A C T G N)){
|
|
49
|
-
next SEQ if $clean =~ m/[$nuc]{$stretch}/;
|
|
50
|
-
}
|
|
51
|
-
}
|
|
52
|
-
print ">$n\n$s\n";
|
|
53
|
-
$good++;
|
|
54
|
-
}
|
|
55
|
-
close FILE;
|
|
56
|
-
print STDERR "Total sequences: $N\nAfter filtering: $good\n";
|
|
57
|
-
}
|
|
58
|
-
|
|
59
|
-
|
|
60
|
-
|
|
@@ -1,38 +0,0 @@
|
|
|
1
|
-
#!/usr/bin/env perl
|
|
2
|
-
#
|
|
3
|
-
# @author Luis M Rodriguez-R
|
|
4
|
-
# @update Oct-07-2015
|
|
5
|
-
# @license artistic license 2.0
|
|
6
|
-
#
|
|
7
|
-
|
|
8
|
-
use warnings;
|
|
9
|
-
use strict;
|
|
10
|
-
|
|
11
|
-
$#ARGV>=0 or die "
|
|
12
|
-
Usage:
|
|
13
|
-
$0 seqs.fa... > length.txt
|
|
14
|
-
|
|
15
|
-
seqs.fa One or more FastA files.
|
|
16
|
-
length.txt A table with the lengths of the sequences.
|
|
17
|
-
|
|
18
|
-
";
|
|
19
|
-
|
|
20
|
-
for my $fa (@ARGV){
|
|
21
|
-
open FA, "<", $fa or die "Cannot open file: $fa: $!\n";
|
|
22
|
-
my $def = '';
|
|
23
|
-
my $len = 0;
|
|
24
|
-
while(<FA>){
|
|
25
|
-
next if /^;/;
|
|
26
|
-
if(m/^>(\S+)\s?/){
|
|
27
|
-
print "$def\t$len\n" if $def;
|
|
28
|
-
$def = $1;
|
|
29
|
-
$len = 0;
|
|
30
|
-
}else{
|
|
31
|
-
s/[^A-Za-z]//g;
|
|
32
|
-
$len+= length $_;
|
|
33
|
-
}
|
|
34
|
-
}
|
|
35
|
-
print "$def\t$len\n" if $def;
|
|
36
|
-
close FA;
|
|
37
|
-
}
|
|
38
|
-
|
|
@@ -1,55 +0,0 @@
|
|
|
1
|
-
#!/usr/bin/env perl
|
|
2
|
-
#
|
|
3
|
-
# @author Luis M. Rodriguez-R <lmrodriguezr at gmail dot com>
|
|
4
|
-
# @update Oct-13-2015
|
|
5
|
-
# @license artistic license 2.0
|
|
6
|
-
#
|
|
7
|
-
|
|
8
|
-
use warnings;
|
|
9
|
-
use strict;
|
|
10
|
-
use Symbol;
|
|
11
|
-
|
|
12
|
-
my ($file, $base, $outN) = @ARGV;
|
|
13
|
-
|
|
14
|
-
$outN ||= 12;
|
|
15
|
-
($file and $base) or die "
|
|
16
|
-
Usage
|
|
17
|
-
$0 in_file.fa out_base[ no_files]
|
|
18
|
-
|
|
19
|
-
in_file.fa Input file in FastA format.
|
|
20
|
-
out_base Prefix for the name of the output files. It will
|
|
21
|
-
be appended with .<i>.fa, where <i> is a consecutive
|
|
22
|
-
number starting in 1.
|
|
23
|
-
no_files Number of files to generate. By default: 12.
|
|
24
|
-
|
|
25
|
-
";
|
|
26
|
-
|
|
27
|
-
|
|
28
|
-
my @outSym = ();
|
|
29
|
-
for my $i (1 .. $outN){
|
|
30
|
-
$outSym[$i-1] = gensym;
|
|
31
|
-
open $outSym[$i-1], ">", "$base.$i.fa" or
|
|
32
|
-
die "I can not create the file: $base.$i.fa: $!\n";
|
|
33
|
-
}
|
|
34
|
-
|
|
35
|
-
|
|
36
|
-
my($i, $seq) = (-1, '');
|
|
37
|
-
open FILE, "<", $file or die "I can not read the file: $file: $!\n";
|
|
38
|
-
while(my $ln=<FILE>){
|
|
39
|
-
next if $ln=~/^;/;
|
|
40
|
-
if($ln =~ m/^>/){
|
|
41
|
-
print { $outSym[$i % $outN] } $seq if $seq;
|
|
42
|
-
$i++;
|
|
43
|
-
$seq = '';
|
|
44
|
-
}
|
|
45
|
-
$seq.=$ln;
|
|
46
|
-
}
|
|
47
|
-
print { $outSym[$i % $outN] } $seq if $seq;
|
|
48
|
-
close FILE;
|
|
49
|
-
|
|
50
|
-
for(my $j=0; $j<$outN; $j++){
|
|
51
|
-
close $outSym[$j];
|
|
52
|
-
}
|
|
53
|
-
|
|
54
|
-
print STDERR "Sequences: ".($i+1)."\nFiles: $outN\n";
|
|
55
|
-
|