metamri 0.2.8 → 0.2.9

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@@ -0,0 +1,9 @@
1
+ Gemfile.lock
2
+ *.log
3
+ *.gem
4
+ ._*
5
+ .idea
6
+ *~
7
+ test/fixtures/visit_raw_data_directory
8
+ doc/*
9
+ coverage
data/Rakefile CHANGED
@@ -3,27 +3,8 @@ require 'rake'
3
3
  require 'rdoc/task'
4
4
  require 'rake/testtask'
5
5
 
6
- begin
7
- require 'jeweler'
8
- Jeweler::Tasks.new do |gemspec|
9
- gemspec.name = "metamri"
10
- gemspec.summary = "MRI metadata"
11
- gemspec.description = "Extraction of MRI metadata and insertion into compatible sqlite3 databases."
12
- gemspec.email = "kk4@medicine.wisc.edu"
13
- gemspec.homepage = "http://github.com/brainmap/metamri"
14
- gemspec.authors = ["Kristopher J. Kosmatka", "Erik Kastman"]
15
- gemspec.add_dependency('sqlite3', '~>1.3.3')
16
- gemspec.add_dependency('dicom', '~>0.8.0')
17
- gemspec.add_dependency('activeresource', '~>3.0')
18
- gemspec.add_dependency('rmagick', '~>2.13.1')
19
- gemspec.add_dependency('hirb', '~>0.4')
20
- gemspec.add_development_dependency('rspec', '~>2.5')
21
- gemspec.add_development_dependency('escoffier')
22
- end
23
- Jeweler::GemcutterTasks.new
24
- rescue LoadError
25
- puts "Jeweler not available. Install it with: sudo gem install jeweler"
26
- end
6
+ require 'bundler/gem_tasks'
7
+
27
8
 
28
9
  begin
29
10
  require 'spec/rake/spectask'
@@ -22,6 +22,7 @@ require 'metamri/visit_raw_data_directory_resource'
22
22
  require 'metamri/image_dataset_quality_check_resource'
23
23
  require 'metamri/dicom_additions'
24
24
  require 'metamri/raw_image_dataset_thumbnail'
25
+ require 'metamri/version'
25
26
  require 'fileutils'
26
27
 
27
28
  # TODO Move raw_image_dataset_thumbnail out of metamri.
@@ -32,4 +33,7 @@ rescue LoadError
32
33
  puts "Hirb must be installed for pretty output. Use 'sudo gem install hirb'"
33
34
  end
34
35
 
35
- # module Metamri; end
36
+ # Initial Definition of Metamri Namespace
37
+ # TODO: Metamri is not currently namespaced - this declaration is a teaser
38
+ # used for updating to Bundler-style gemspec VERSION constant.
39
+ module Metamri; end
@@ -1,5 +1,5 @@
1
1
  require 'rubygems'
2
- require 'sqlite3'
2
+ # require 'sqlite3'
3
3
  require 'fileutils'
4
4
  require 'metamri/nifti_builder'
5
5
 
@@ -1,7 +1,7 @@
1
1
  require 'pp'
2
2
  require 'rubygems';
3
3
  require 'yaml';
4
- require 'sqlite3';
4
+ # require 'sqlite3';
5
5
  require 'dicom'
6
6
 
7
7
 
@@ -0,0 +1,3 @@
1
+ module Metamri
2
+ VERSION = "0.2.9"
3
+ end
@@ -4,7 +4,7 @@ require 'tempfile'
4
4
  require 'yaml'
5
5
  require 'tmpdir'
6
6
  require 'fileutils'
7
- require 'sqlite3'
7
+ # require 'sqlite3'
8
8
  require 'logger'
9
9
  require 'pp'
10
10
  require 'metamri/raw_image_file'
@@ -1,156 +1,29 @@
1
- # Generated by jeweler
2
- # DO NOT EDIT THIS FILE DIRECTLY
3
- # Instead, edit Jeweler::Tasks in Rakefile, and run 'rake gemspec'
4
1
  # -*- encoding: utf-8 -*-
2
+ $:.push File.expand_path("../lib", __FILE__)
3
+ require "metamri/version"
5
4
 
6
5
  Gem::Specification.new do |s|
7
6
  s.name = %q{metamri}
8
- s.version = "0.2.8"
7
+ s.version = Metamri::VERSION
9
8
 
10
- s.required_rubygems_version = Gem::Requirement.new(">= 0") if s.respond_to? :required_rubygems_version=
11
9
  s.authors = ["Kristopher J. Kosmatka", "Erik Kastman"]
12
- s.date = %q{2011-07-28}
13
- s.description = %q{Extraction of MRI metadata and insertion into compatible sqlite3 databases.}
14
- s.email = %q{kk4@medicine.wisc.edu}
15
- s.executables = ["convert_visit.rb", "import_visit.rb", "import_respiratory_files.rb", "import_study.rb", "list_visit"]
16
- s.extra_rdoc_files = [
17
- "README.rdoc"
18
- ]
19
- s.files = [
20
- ".rspec",
21
- "Gemfile",
22
- "Gemfile.lock",
23
- "Manifest",
24
- "README.rdoc",
25
- "Rakefile",
26
- "VERSION",
27
- "bin/convert_visit.rb",
28
- "bin/import_respiratory_files.rb",
29
- "bin/import_study.rb",
30
- "bin/import_visit.rb",
31
- "bin/list_visit",
32
- "lib/metamri.rb",
33
- "lib/metamri/core_additions.rb",
34
- "lib/metamri/dicom_additions.rb",
35
- "lib/metamri/image_dataset_quality_check_resource.rb",
36
- "lib/metamri/mysql_tools.rb",
37
- "lib/metamri/nifti_builder.rb",
38
- "lib/metamri/raw_image_dataset.rb",
39
- "lib/metamri/raw_image_dataset_resource.rb",
40
- "lib/metamri/raw_image_dataset_thumbnail.rb",
41
- "lib/metamri/raw_image_file.rb",
42
- "lib/metamri/series_description_parameters.rb",
43
- "lib/metamri/visit_raw_data_directory.rb",
44
- "lib/metamri/visit_raw_data_directory_resource.rb",
45
- "metamri.gemspec",
46
- "spec/helper_spec.rb",
47
- "spec/unit/dicom_additions_spec.rb",
48
- "spec/unit/nifti_builder_spec.rb",
49
- "spec/unit/raw_image_dataset_spec.rb",
50
- "spec/unit/raw_image_dataset_thumbnail_spec.rb",
51
- "spec/unit/raw_image_file_spec.rb",
52
- "test/fixtures/respiratory_fixtures.yaml",
53
- "test/fixtures/s03_bravo.0156",
54
- "test/fixtures/s03_bravo.0156.yml",
55
- "test/fixtures/thumbnail.png",
56
- "test/fixtures/thumbnail_slicer.png",
57
- "test/raw_image_dataset_test.rb",
58
- "test/raw_image_file_test.rb",
59
- "test/test_helper.rb",
60
- "test/visit_duplication_test.rb",
61
- "test/visit_test.rb"
62
- ]
63
- s.homepage = %q{http://github.com/brainmap/metamri}
64
- s.require_paths = ["lib"]
65
- s.rubygems_version = %q{1.4.2}
66
10
  s.summary = %q{MRI metadata}
67
- s.test_files = [
68
- "spec/helper_spec.rb",
69
- "spec/unit/dicom_additions_spec.rb",
70
- "spec/unit/nifti_builder_spec.rb",
71
- "spec/unit/raw_image_dataset_spec.rb",
72
- "spec/unit/raw_image_dataset_thumbnail_spec.rb",
73
- "spec/unit/raw_image_file_spec.rb",
74
- "test/raw_image_dataset_test.rb",
75
- "test/raw_image_file_test.rb",
76
- "test/test_helper.rb",
77
- "test/visit_duplication_test.rb",
78
- "test/visit_test.rb"
79
- ]
11
+ s.description = %q{Extraction of MRI metadata.}
12
+ s.email = %q{ekk@medicine.wisc.edu}
13
+ s.homepage = %q{http://github.com/brainmap/metamri}
80
14
 
81
- if s.respond_to? :specification_version then
82
- s.specification_version = 3
15
+ s.files = `git ls-files`.split("\n")
16
+ s.test_files = `git ls-files -- {test,spec,features}/*`.split("\n")
17
+ s.executables = `git ls-files -- bin/*`.split("\n").map{ |f| File.basename(f) }
18
+ s.require_paths = ["lib"]
83
19
 
84
- if Gem::Version.new(Gem::VERSION) >= Gem::Version.new('1.2.0') then
85
- s.add_runtime_dependency(%q<metamri>, [">= 0"])
86
- s.add_development_dependency(%q<rspec>, ["~> 2.5"])
87
- s.add_development_dependency(%q<rspec>, ["~> 2.5"])
88
- s.add_development_dependency(%q<rspec>, ["~> 2.5"])
89
- s.add_development_dependency(%q<rspec>, ["~> 2.5"])
90
- s.add_development_dependency(%q<rspec>, ["~> 2.5"])
91
- s.add_development_dependency(%q<rspec>, ["~> 2.5"])
92
- s.add_development_dependency(%q<rspec>, ["~> 2.5"])
93
- s.add_development_dependency(%q<rspec>, ["~> 2.5"])
94
- s.add_development_dependency(%q<rspec>, ["~> 2.5"])
95
- s.add_development_dependency(%q<rspec>, ["~> 2.5"])
96
- s.add_development_dependency(%q<rspec>, ["~> 2.5"])
97
- s.add_development_dependency(%q<escoffier>, [">= 0"])
98
- s.add_development_dependency(%q<rspec>, ["~> 2.5"])
99
- s.add_development_dependency(%q<escoffier>, [">= 0"])
100
- s.add_runtime_dependency(%q<sqlite3>, ["~> 1.3.3"])
101
- s.add_runtime_dependency(%q<dicom>, ["~> 0.8.0"])
102
- s.add_runtime_dependency(%q<activeresource>, ["~> 3.0"])
103
- s.add_runtime_dependency(%q<rmagick>, ["~> 2.13.1"])
104
- s.add_runtime_dependency(%q<hirb>, ["~> 0.4"])
105
- s.add_development_dependency(%q<rspec>, ["~> 2.5"])
106
- s.add_development_dependency(%q<escoffier>, [">= 0"])
107
- else
108
- s.add_dependency(%q<metamri>, [">= 0"])
109
- s.add_dependency(%q<rspec>, ["~> 2.5"])
110
- s.add_dependency(%q<rspec>, ["~> 2.5"])
111
- s.add_dependency(%q<rspec>, ["~> 2.5"])
112
- s.add_dependency(%q<rspec>, ["~> 2.5"])
113
- s.add_dependency(%q<rspec>, ["~> 2.5"])
114
- s.add_dependency(%q<rspec>, ["~> 2.5"])
115
- s.add_dependency(%q<rspec>, ["~> 2.5"])
116
- s.add_dependency(%q<rspec>, ["~> 2.5"])
117
- s.add_dependency(%q<rspec>, ["~> 2.5"])
118
- s.add_dependency(%q<rspec>, ["~> 2.5"])
119
- s.add_dependency(%q<rspec>, ["~> 2.5"])
120
- s.add_dependency(%q<escoffier>, [">= 0"])
121
- s.add_dependency(%q<rspec>, ["~> 2.5"])
122
- s.add_dependency(%q<escoffier>, [">= 0"])
123
- s.add_dependency(%q<sqlite3>, ["~> 1.3.3"])
124
- s.add_dependency(%q<dicom>, ["~> 0.8.0"])
125
- s.add_dependency(%q<activeresource>, ["~> 3.0"])
126
- s.add_dependency(%q<rmagick>, ["~> 2.13.1"])
127
- s.add_dependency(%q<hirb>, ["~> 0.4"])
128
- s.add_dependency(%q<rspec>, ["~> 2.5"])
129
- s.add_dependency(%q<escoffier>, [">= 0"])
130
- end
131
- else
132
- s.add_dependency(%q<metamri>, [">= 0"])
133
- s.add_dependency(%q<rspec>, ["~> 2.5"])
134
- s.add_dependency(%q<rspec>, ["~> 2.5"])
135
- s.add_dependency(%q<rspec>, ["~> 2.5"])
136
- s.add_dependency(%q<rspec>, ["~> 2.5"])
137
- s.add_dependency(%q<rspec>, ["~> 2.5"])
138
- s.add_dependency(%q<rspec>, ["~> 2.5"])
139
- s.add_dependency(%q<rspec>, ["~> 2.5"])
140
- s.add_dependency(%q<rspec>, ["~> 2.5"])
141
- s.add_dependency(%q<rspec>, ["~> 2.5"])
142
- s.add_dependency(%q<rspec>, ["~> 2.5"])
143
- s.add_dependency(%q<rspec>, ["~> 2.5"])
144
- s.add_dependency(%q<escoffier>, [">= 0"])
145
- s.add_dependency(%q<rspec>, ["~> 2.5"])
146
- s.add_dependency(%q<escoffier>, [">= 0"])
147
- s.add_dependency(%q<sqlite3>, ["~> 1.3.3"])
148
- s.add_dependency(%q<dicom>, ["~> 0.8.0"])
149
- s.add_dependency(%q<activeresource>, ["~> 3.0"])
150
- s.add_dependency(%q<rmagick>, ["~> 2.13.1"])
151
- s.add_dependency(%q<hirb>, ["~> 0.4"])
152
- s.add_dependency(%q<rspec>, ["~> 2.5"])
153
- s.add_dependency(%q<escoffier>, [">= 0"])
154
- end
20
+ s.add_runtime_dependency('dicom', "~> 0.8.0")
21
+ s.add_runtime_dependency('activeresource', "~> 3.0")
22
+ s.add_runtime_dependency('rmagick', "~> 2.13.1")
23
+ s.add_runtime_dependency('hirb', "~> 0.4")
24
+
25
+ s.add_development_dependency('rspec', "~> 2.5")
26
+ s.add_development_dependency('escoffier', ">= 0")
27
+
155
28
  end
156
29
 
metadata CHANGED
@@ -1,13 +1,13 @@
1
1
  --- !ruby/object:Gem::Specification
2
2
  name: metamri
3
3
  version: !ruby/object:Gem::Version
4
- hash: 7
4
+ hash: 5
5
5
  prerelease:
6
6
  segments:
7
7
  - 0
8
8
  - 2
9
- - 8
10
- version: 0.2.8
9
+ - 9
10
+ version: 0.2.9
11
11
  platform: ruby
12
12
  authors:
13
13
  - Kristopher J. Kosmatka
@@ -16,252 +16,13 @@ autorequire:
16
16
  bindir: bin
17
17
  cert_chain: []
18
18
 
19
- date: 2011-07-28 00:00:00 -05:00
19
+ date: 2011-08-18 00:00:00 -05:00
20
20
  default_executable:
21
21
  dependencies:
22
22
  - !ruby/object:Gem::Dependency
23
- prerelease: false
24
- name: metamri
25
- type: :runtime
26
- version_requirements: &id001 !ruby/object:Gem::Requirement
27
- none: false
28
- requirements:
29
- - - ">="
30
- - !ruby/object:Gem::Version
31
- hash: 3
32
- segments:
33
- - 0
34
- version: "0"
35
- requirement: *id001
36
- - !ruby/object:Gem::Dependency
37
- prerelease: false
38
- name: rspec
39
- type: :development
40
- version_requirements: &id002 !ruby/object:Gem::Requirement
41
- none: false
42
- requirements:
43
- - - ~>
44
- - !ruby/object:Gem::Version
45
- hash: 9
46
- segments:
47
- - 2
48
- - 5
49
- version: "2.5"
50
- requirement: *id002
51
- - !ruby/object:Gem::Dependency
52
- prerelease: false
53
- name: rspec
54
- type: :development
55
- version_requirements: &id003 !ruby/object:Gem::Requirement
56
- none: false
57
- requirements:
58
- - - ~>
59
- - !ruby/object:Gem::Version
60
- hash: 9
61
- segments:
62
- - 2
63
- - 5
64
- version: "2.5"
65
- requirement: *id003
66
- - !ruby/object:Gem::Dependency
67
- prerelease: false
68
- name: rspec
69
- type: :development
70
- version_requirements: &id004 !ruby/object:Gem::Requirement
71
- none: false
72
- requirements:
73
- - - ~>
74
- - !ruby/object:Gem::Version
75
- hash: 9
76
- segments:
77
- - 2
78
- - 5
79
- version: "2.5"
80
- requirement: *id004
81
- - !ruby/object:Gem::Dependency
82
- prerelease: false
83
- name: rspec
84
- type: :development
85
- version_requirements: &id005 !ruby/object:Gem::Requirement
86
- none: false
87
- requirements:
88
- - - ~>
89
- - !ruby/object:Gem::Version
90
- hash: 9
91
- segments:
92
- - 2
93
- - 5
94
- version: "2.5"
95
- requirement: *id005
96
- - !ruby/object:Gem::Dependency
97
- prerelease: false
98
- name: rspec
99
- type: :development
100
- version_requirements: &id006 !ruby/object:Gem::Requirement
101
- none: false
102
- requirements:
103
- - - ~>
104
- - !ruby/object:Gem::Version
105
- hash: 9
106
- segments:
107
- - 2
108
- - 5
109
- version: "2.5"
110
- requirement: *id006
111
- - !ruby/object:Gem::Dependency
112
- prerelease: false
113
- name: rspec
114
- type: :development
115
- version_requirements: &id007 !ruby/object:Gem::Requirement
116
- none: false
117
- requirements:
118
- - - ~>
119
- - !ruby/object:Gem::Version
120
- hash: 9
121
- segments:
122
- - 2
123
- - 5
124
- version: "2.5"
125
- requirement: *id007
126
- - !ruby/object:Gem::Dependency
127
- prerelease: false
128
- name: rspec
129
- type: :development
130
- version_requirements: &id008 !ruby/object:Gem::Requirement
131
- none: false
132
- requirements:
133
- - - ~>
134
- - !ruby/object:Gem::Version
135
- hash: 9
136
- segments:
137
- - 2
138
- - 5
139
- version: "2.5"
140
- requirement: *id008
141
- - !ruby/object:Gem::Dependency
142
- prerelease: false
143
- name: rspec
144
- type: :development
145
- version_requirements: &id009 !ruby/object:Gem::Requirement
146
- none: false
147
- requirements:
148
- - - ~>
149
- - !ruby/object:Gem::Version
150
- hash: 9
151
- segments:
152
- - 2
153
- - 5
154
- version: "2.5"
155
- requirement: *id009
156
- - !ruby/object:Gem::Dependency
157
- prerelease: false
158
- name: rspec
159
- type: :development
160
- version_requirements: &id010 !ruby/object:Gem::Requirement
161
- none: false
162
- requirements:
163
- - - ~>
164
- - !ruby/object:Gem::Version
165
- hash: 9
166
- segments:
167
- - 2
168
- - 5
169
- version: "2.5"
170
- requirement: *id010
171
- - !ruby/object:Gem::Dependency
172
- prerelease: false
173
- name: rspec
174
- type: :development
175
- version_requirements: &id011 !ruby/object:Gem::Requirement
176
- none: false
177
- requirements:
178
- - - ~>
179
- - !ruby/object:Gem::Version
180
- hash: 9
181
- segments:
182
- - 2
183
- - 5
184
- version: "2.5"
185
- requirement: *id011
186
- - !ruby/object:Gem::Dependency
187
- prerelease: false
188
- name: rspec
189
- type: :development
190
- version_requirements: &id012 !ruby/object:Gem::Requirement
191
- none: false
192
- requirements:
193
- - - ~>
194
- - !ruby/object:Gem::Version
195
- hash: 9
196
- segments:
197
- - 2
198
- - 5
199
- version: "2.5"
200
- requirement: *id012
201
- - !ruby/object:Gem::Dependency
202
- prerelease: false
203
- name: escoffier
204
- type: :development
205
- version_requirements: &id013 !ruby/object:Gem::Requirement
206
- none: false
207
- requirements:
208
- - - ">="
209
- - !ruby/object:Gem::Version
210
- hash: 3
211
- segments:
212
- - 0
213
- version: "0"
214
- requirement: *id013
215
- - !ruby/object:Gem::Dependency
216
- prerelease: false
217
- name: rspec
218
- type: :development
219
- version_requirements: &id014 !ruby/object:Gem::Requirement
220
- none: false
221
- requirements:
222
- - - ~>
223
- - !ruby/object:Gem::Version
224
- hash: 9
225
- segments:
226
- - 2
227
- - 5
228
- version: "2.5"
229
- requirement: *id014
230
- - !ruby/object:Gem::Dependency
231
- prerelease: false
232
- name: escoffier
233
- type: :development
234
- version_requirements: &id015 !ruby/object:Gem::Requirement
235
- none: false
236
- requirements:
237
- - - ">="
238
- - !ruby/object:Gem::Version
239
- hash: 3
240
- segments:
241
- - 0
242
- version: "0"
243
- requirement: *id015
244
- - !ruby/object:Gem::Dependency
245
- prerelease: false
246
- name: sqlite3
247
- type: :runtime
248
- version_requirements: &id016 !ruby/object:Gem::Requirement
249
- none: false
250
- requirements:
251
- - - ~>
252
- - !ruby/object:Gem::Version
253
- hash: 29
254
- segments:
255
- - 1
256
- - 3
257
- - 3
258
- version: 1.3.3
259
- requirement: *id016
260
- - !ruby/object:Gem::Dependency
261
- prerelease: false
262
23
  name: dicom
263
- type: :runtime
264
- version_requirements: &id017 !ruby/object:Gem::Requirement
24
+ prerelease: false
25
+ requirement: &id001 !ruby/object:Gem::Requirement
265
26
  none: false
266
27
  requirements:
267
28
  - - ~>
@@ -272,12 +33,12 @@ dependencies:
272
33
  - 8
273
34
  - 0
274
35
  version: 0.8.0
275
- requirement: *id017
36
+ type: :runtime
37
+ version_requirements: *id001
276
38
  - !ruby/object:Gem::Dependency
277
- prerelease: false
278
39
  name: activeresource
279
- type: :runtime
280
- version_requirements: &id018 !ruby/object:Gem::Requirement
40
+ prerelease: false
41
+ requirement: &id002 !ruby/object:Gem::Requirement
281
42
  none: false
282
43
  requirements:
283
44
  - - ~>
@@ -287,12 +48,12 @@ dependencies:
287
48
  - 3
288
49
  - 0
289
50
  version: "3.0"
290
- requirement: *id018
51
+ type: :runtime
52
+ version_requirements: *id002
291
53
  - !ruby/object:Gem::Dependency
292
- prerelease: false
293
54
  name: rmagick
294
- type: :runtime
295
- version_requirements: &id019 !ruby/object:Gem::Requirement
55
+ prerelease: false
56
+ requirement: &id003 !ruby/object:Gem::Requirement
296
57
  none: false
297
58
  requirements:
298
59
  - - ~>
@@ -303,12 +64,12 @@ dependencies:
303
64
  - 13
304
65
  - 1
305
66
  version: 2.13.1
306
- requirement: *id019
67
+ type: :runtime
68
+ version_requirements: *id003
307
69
  - !ruby/object:Gem::Dependency
308
- prerelease: false
309
70
  name: hirb
310
- type: :runtime
311
- version_requirements: &id020 !ruby/object:Gem::Requirement
71
+ prerelease: false
72
+ requirement: &id004 !ruby/object:Gem::Requirement
312
73
  none: false
313
74
  requirements:
314
75
  - - ~>
@@ -318,12 +79,12 @@ dependencies:
318
79
  - 0
319
80
  - 4
320
81
  version: "0.4"
321
- requirement: *id020
82
+ type: :runtime
83
+ version_requirements: *id004
322
84
  - !ruby/object:Gem::Dependency
323
- prerelease: false
324
85
  name: rspec
325
- type: :development
326
- version_requirements: &id021 !ruby/object:Gem::Requirement
86
+ prerelease: false
87
+ requirement: &id005 !ruby/object:Gem::Requirement
327
88
  none: false
328
89
  requirements:
329
90
  - - ~>
@@ -333,12 +94,12 @@ dependencies:
333
94
  - 2
334
95
  - 5
335
96
  version: "2.5"
336
- requirement: *id021
97
+ type: :development
98
+ version_requirements: *id005
337
99
  - !ruby/object:Gem::Dependency
338
- prerelease: false
339
100
  name: escoffier
340
- type: :development
341
- version_requirements: &id022 !ruby/object:Gem::Requirement
101
+ prerelease: false
102
+ requirement: &id006 !ruby/object:Gem::Requirement
342
103
  none: false
343
104
  requirements:
344
105
  - - ">="
@@ -347,23 +108,24 @@ dependencies:
347
108
  segments:
348
109
  - 0
349
110
  version: "0"
350
- requirement: *id022
351
- description: Extraction of MRI metadata and insertion into compatible sqlite3 databases.
352
- email: kk4@medicine.wisc.edu
111
+ type: :development
112
+ version_requirements: *id006
113
+ description: Extraction of MRI metadata.
114
+ email: ekk@medicine.wisc.edu
353
115
  executables:
354
116
  - convert_visit.rb
355
- - import_visit.rb
356
117
  - import_respiratory_files.rb
357
118
  - import_study.rb
119
+ - import_visit.rb
358
120
  - list_visit
359
121
  extensions: []
360
122
 
361
- extra_rdoc_files:
362
- - README.rdoc
123
+ extra_rdoc_files: []
124
+
363
125
  files:
126
+ - .gitignore
364
127
  - .rspec
365
128
  - Gemfile
366
- - Gemfile.lock
367
129
  - Manifest
368
130
  - README.rdoc
369
131
  - Rakefile
@@ -384,6 +146,7 @@ files:
384
146
  - lib/metamri/raw_image_dataset_thumbnail.rb
385
147
  - lib/metamri/raw_image_file.rb
386
148
  - lib/metamri/series_description_parameters.rb
149
+ - lib/metamri/version.rb
387
150
  - lib/metamri/visit_raw_data_directory.rb
388
151
  - lib/metamri/visit_raw_data_directory_resource.rb
389
152
  - metamri.gemspec
@@ -444,6 +207,11 @@ test_files:
444
207
  - spec/unit/raw_image_dataset_spec.rb
445
208
  - spec/unit/raw_image_dataset_thumbnail_spec.rb
446
209
  - spec/unit/raw_image_file_spec.rb
210
+ - test/fixtures/respiratory_fixtures.yaml
211
+ - test/fixtures/s03_bravo.0156
212
+ - test/fixtures/s03_bravo.0156.yml
213
+ - test/fixtures/thumbnail.png
214
+ - test/fixtures/thumbnail_slicer.png
447
215
  - test/raw_image_dataset_test.rb
448
216
  - test/raw_image_file_test.rb
449
217
  - test/test_helper.rb
@@ -1,52 +0,0 @@
1
- PATH
2
- remote: .
3
- specs:
4
- metamri (0.2.7)
5
- activeresource (~> 3.0)
6
- dicom (~> 0.8.0)
7
- hirb (~> 0.4)
8
- metamri
9
- rmagick (~> 2.13.1)
10
- sqlite3 (~> 1.3.3)
11
-
12
- GEM
13
- remote: http://rubygems.org/
14
- specs:
15
- activemodel (3.0.9)
16
- activesupport (= 3.0.9)
17
- builder (~> 2.1.2)
18
- i18n (~> 0.5.0)
19
- activeresource (3.0.9)
20
- activemodel (= 3.0.9)
21
- activesupport (= 3.0.9)
22
- activesupport (3.0.9)
23
- builder (2.1.2)
24
- bzip2-ruby (0.2.7)
25
- dicom (0.8)
26
- diff-lcs (1.1.2)
27
- escoffier (0.1.3)
28
- bzip2-ruby
29
- snmp
30
- term-ansicolor
31
- hirb (0.4.5)
32
- i18n (0.5.0)
33
- rmagick (2.13.1)
34
- rspec (2.6.0)
35
- rspec-core (~> 2.6.0)
36
- rspec-expectations (~> 2.6.0)
37
- rspec-mocks (~> 2.6.0)
38
- rspec-core (2.6.4)
39
- rspec-expectations (2.6.0)
40
- diff-lcs (~> 1.1.2)
41
- rspec-mocks (2.6.0)
42
- snmp (1.0.3)
43
- sqlite3 (1.3.4)
44
- term-ansicolor (1.0.5)
45
-
46
- PLATFORMS
47
- ruby
48
-
49
- DEPENDENCIES
50
- escoffier
51
- metamri!
52
- rspec (~> 2.5)