mesh-medical-subject-headings 2.0.1 → 2.0.2
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- checksums.yaml +4 -4
- data/CHANGELOG.md +4 -0
- data/Gemfile.lock +1 -1
- data/lib/MESH.rb +1 -0
- data/lib/MESH/tree.rb +2 -2
- data/lib/MESH/version.rb +1 -1
- data/test/classifier_test.rb +43 -43
- data/test/mesh_core_test.rb +34 -0
- metadata +3 -3
checksums.yaml
CHANGED
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@@ -1,7 +1,7 @@
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---
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SHA1:
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metadata.gz:
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data.tar.gz:
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metadata.gz: ff85c9bce1237839fe7afdc94b9026c9e6761abb
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data.tar.gz: 42308e03d574784a942cff743ddd1c5be8509c03
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SHA512:
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metadata.gz:
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data.tar.gz:
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metadata.gz: 487fbb55afa5c0aa404d5c343d9ce334591b2d87a71388cc8a9abf0a0001092597cf65d44328598d211d315266daa060eea01068f53068da4126d16c555f6852
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data.tar.gz: 7867334fc8d9634cc437c4aa22d2d6d56e9fb183034022033870228ac8cb5e1a2b1a96561b6f46f7db7a3fb0447156afb35f07d613e6019d26f42362ebabf5bd
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data/CHANGELOG.md
CHANGED
data/Gemfile.lock
CHANGED
data/lib/MESH.rb
CHANGED
data/lib/MESH/tree.rb
CHANGED
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@@ -73,8 +73,8 @@ module MESH
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73
73
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parts.pop
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74
74
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parent_tree_number = parts.join '.'
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75
75
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parent = @by_tree_number[parent_tree_number]
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76
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-
heading.parents << parent unless parent.nil?
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77
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-
parent.children << heading unless parent.nil?
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76
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+
heading.parents << parent unless parent.nil? || heading.parents.include?(parent)
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77
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+
parent.children << heading unless parent.nil? || parent.children.include?(heading)
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78
78
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end
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79
79
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end
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80
80
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end
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data/lib/MESH/version.rb
CHANGED
data/test/classifier_test.rb
CHANGED
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@@ -48,16 +48,16 @@ module MESH
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48
48
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expected = {
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49
49
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'I' => [1.0, {
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50
50
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@mesh_tree.find('D013337') => 1.0,
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51
|
-
@mesh_tree.find('
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|
52
|
-
@mesh_tree.find('
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53
|
-
@mesh_tree.find('D004505') => 0.
|
|
54
|
-
@mesh_tree.find('D004493') => 0.
|
|
51
|
+
@mesh_tree.find('D013334') => 0.111,
|
|
52
|
+
@mesh_tree.find('D013336') => 0.333,
|
|
53
|
+
@mesh_tree.find('D004505') => 0.037,
|
|
54
|
+
@mesh_tree.find('D004493') => 0.049
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|
55
55
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}],
|
|
56
56
|
'M' => [1.0, {
|
|
57
57
|
@mesh_tree.find('D013337') => 1.0,
|
|
58
|
-
@mesh_tree.find('D013336') => 0.
|
|
59
|
-
@mesh_tree.find('D013334') => 0.
|
|
60
|
-
@mesh_tree.find('D009272') => 0.
|
|
58
|
+
@mesh_tree.find('D013336') => 0.333,
|
|
59
|
+
@mesh_tree.find('D013334') => 0.111,
|
|
60
|
+
@mesh_tree.find('D009272') => 0.037
|
|
61
61
|
}]
|
|
62
62
|
}
|
|
63
63
|
assert_classification expected, @classifier.classify([{matches: @headings[:poor_abstract], weight: 1.0}])
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@@ -89,15 +89,15 @@ module MESH
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|
|
89
89
|
@mesh_tree.find('D008606') => 0.667,
|
|
90
90
|
@mesh_tree.find('D011579') => 0.222,
|
|
91
91
|
@mesh_tree.find('D035781') => 1.0,
|
|
92
|
-
@mesh_tree.find('D009679') => 0.
|
|
93
|
-
@mesh_tree.find('D005190') => 0.
|
|
94
|
-
@mesh_tree.find('D011593') => 0.
|
|
95
|
-
@mesh_tree.find('D001520') => 0.
|
|
96
|
-
@mesh_tree.find('D011584') => 0.
|
|
97
|
-
@mesh_tree.find('D001525') => 0.
|
|
98
|
-
@mesh_tree.find('D004191') => 0.
|
|
99
|
-
@mesh_tree.find('D012961') => 0.
|
|
100
|
-
@mesh_tree.find('D012942') => 0.
|
|
92
|
+
@mesh_tree.find('D009679') => 0.333,
|
|
93
|
+
@mesh_tree.find('D005190') => 0.111,
|
|
94
|
+
@mesh_tree.find('D011593') => 0.037,
|
|
95
|
+
@mesh_tree.find('D001520') => 0.012,
|
|
96
|
+
@mesh_tree.find('D011584') => 0.012,
|
|
97
|
+
@mesh_tree.find('D001525') => 0.008,
|
|
98
|
+
@mesh_tree.find('D004191') => 0.003,
|
|
99
|
+
@mesh_tree.find('D012961') => 0.037,
|
|
100
|
+
@mesh_tree.find('D012942') => 0.012
|
|
101
101
|
}],
|
|
102
102
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'H' => [3.0, {
|
|
103
103
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@mesh_tree.find('D000715') => 3.0,
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@@ -115,11 +115,11 @@ module MESH
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115
115
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@mesh_tree.find('D003469') => 0.667,
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116
116
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@mesh_tree.find('D000884') => 0.222,
|
|
117
117
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@mesh_tree.find('D000883') => 0.074,
|
|
118
|
-
@mesh_tree.find('D012942') => 0.
|
|
119
|
-
@mesh_tree.find('D012961') => 0.
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|
118
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+
@mesh_tree.find('D012942') => 0.111,
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119
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+
@mesh_tree.find('D012961') => 0.259,
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120
120
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@mesh_tree.find('D035781') => 1.0,
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121
|
-
@mesh_tree.find('D009679') => 0.
|
|
122
|
-
@mesh_tree.find('D005190') => 0.
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121
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+
@mesh_tree.find('D009679') => 0.333,
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122
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+
@mesh_tree.find('D005190') => 0.111
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123
123
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}],
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124
124
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'K' => [2.0, {
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|
125
125
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@mesh_tree.find('D018594') => 2.0,
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@@ -139,11 +139,11 @@ module MESH
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139
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'Z' => [3.0, {
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140
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@mesh_tree.find('D008131') => 3.0,
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141
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@mesh_tree.find('D002947') => 1.0,
|
|
142
|
-
@mesh_tree.find('D005842') => 0.
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|
142
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+
@mesh_tree.find('D005842') => 0.407,
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@mesh_tree.find('D004739') => 1.0,
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144
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-
@mesh_tree.find('D006113') => 0.
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145
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-
@mesh_tree.find('D005060') => 0.
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|
146
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-
@mesh_tree.find('D062312') => 0.
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|
144
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+
@mesh_tree.find('D006113') => 0.333,
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145
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+
@mesh_tree.find('D005060') => 0.111,
|
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146
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+
@mesh_tree.find('D062312') => 0.111
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147
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}]
|
|
148
148
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|
|
149
149
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}
|
|
@@ -160,19 +160,19 @@ module MESH
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|
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160
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@mesh_tree.find('D027861') => 1.0, @mesh_tree.find('D027824') => 0.333, @mesh_tree.find('D019685') => 0.111, @mesh_tree.find('D019684') => 0.037, @mesh_tree.find('D019669') => 0.012, @mesh_tree.find('D057949') => 0.004, @mesh_tree.find('D057948') => 0.001
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|
161
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}],
|
|
162
162
|
'C' => [1.0, {
|
|
163
|
-
@mesh_tree.find('D003221') => 1.0, @mesh_tree.find('D019954') =>
|
|
163
|
+
@mesh_tree.find('D003221') => 1.0, @mesh_tree.find('D019954') => 0.333, @mesh_tree.find('D009461') => 0.111, @mesh_tree.find('D009422') => 0.037, @mesh_tree.find('D012816') => 0.037, @mesh_tree.find('D013568') => 0.012
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|
164
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}],
|
|
165
165
|
'D' => [13.0, {
|
|
166
|
-
@mesh_tree.find('D007854') => 13.0, @mesh_tree.find('D019216') =>
|
|
166
|
+
@mesh_tree.find('D007854') => 13.0, @mesh_tree.find('D019216') => 4.333, @mesh_tree.find('D004602') => 1.444, @mesh_tree.find('D007287') => 0.963, @mesh_tree.find('D008670') => 1.444
|
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167
167
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}],
|
|
168
168
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'E' => [2.0, {
|
|
169
169
|
@mesh_tree.find('D004562') => 2.0, @mesh_tree.find('D006334') => 0.667, @mesh_tree.find('D003935') => 0.222, @mesh_tree.find('D019937') => 0.296, @mesh_tree.find('D003933') => 0.099, @mesh_tree.find('D004568') => 0.667
|
|
170
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|
}],
|
|
171
171
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'F' => [4.0, {
|
|
172
|
-
@mesh_tree.find('D003221') => 1.0, @mesh_tree.find('D019954') =>
|
|
172
|
+
@mesh_tree.find('D003221') => 1.0, @mesh_tree.find('D019954') => 0.333, @mesh_tree.find('D001520') => 0.111, @mesh_tree.find('D007858') => 1.0, @mesh_tree.find('D008606') => 2.0, @mesh_tree.find('D011579') => 0.704, @mesh_tree.find('D011588') => 0.333, @mesh_tree.find('D011585') => 0.111, @mesh_tree.find('D011584') => 0.111, @mesh_tree.find('D001525') => 0.037, @mesh_tree.find('D004191') => 0.012, @mesh_tree.find('D013850') => 1.0, @mesh_tree.find('D014836') => 4.0
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173
173
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}],
|
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174
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'G' => [2.0, {
|
|
175
|
-
@mesh_tree.find('D000200') => 2.0, @mesh_tree.find('D008564') =>
|
|
175
|
+
@mesh_tree.find('D000200') => 2.0, @mesh_tree.find('D008564') => 0.667, @mesh_tree.find('D055592') => 0.222, @mesh_tree.find('D055585') => 0.494, @mesh_tree.find('D002468') => 0.222, @mesh_tree.find('D055724') => 0.222, @mesh_tree.find('D010829') => 0.074, @mesh_tree.find('D009424') => 0.222, @mesh_tree.find('D055687') => 0.074, @mesh_tree.find('D013995') => 1.0, @mesh_tree.find('D014919') => 1.0, @mesh_tree.find('D000392') => 0.333, @mesh_tree.find('D055907') => 0.111, @mesh_tree.find('D055691') => 0.037, @mesh_tree.find('D055669') => 0.126, @mesh_tree.find('D001686') => 0.042, @mesh_tree.find('D014887') => 0.444, @mesh_tree.find('D001272') => 0.185, @mesh_tree.find('D004777') => 0.132, @mesh_tree.find('D008685') => 0.210, @mesh_tree.find('D000388') => 0.111, @mesh_tree.find('D014965') => 1.0, @mesh_tree.find('D060733') => 0.333, @mesh_tree.find('D055590') => 0.111, @mesh_tree.find('D060328') => 0.037, @mesh_tree.find('D011827') => 0.222, @mesh_tree.find('D011839') => 0.333
|
|
176
176
|
}],
|
|
177
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|
'I' => [1.0, {
|
|
178
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|
@mesh_tree.find('D014937') => 1.0, @mesh_tree.find('D006802') => 0.333
|
|
@@ -181,13 +181,13 @@ module MESH
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181
181
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@mesh_tree.find('D019368') => 1.0, @mesh_tree.find('D006809') => 0.333
|
|
182
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|
}],
|
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183
183
|
'L' => [1.0, {
|
|
184
|
-
@mesh_tree.find('D009275') => 1.0, @mesh_tree.find('D009626') => 0.333, @mesh_tree.find('D008037') => 0.111, @mesh_tree.find('D007802') => 0.037, @mesh_tree.find('D003142') => 0.
|
|
184
|
+
@mesh_tree.find('D009275') => 1.0, @mesh_tree.find('D009626') => 0.333, @mesh_tree.find('D008037') => 0.111, @mesh_tree.find('D007802') => 0.037, @mesh_tree.find('D003142') => 0.012, @mesh_tree.find('D007254') => 0.004
|
|
185
185
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}],
|
|
186
186
|
'M' => [6.0, {
|
|
187
187
|
@mesh_tree.find('D010361') => 6.0, @mesh_tree.find('D009272') => 2.0
|
|
188
188
|
}],
|
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189
189
|
'N' => [1.0, {
|
|
190
|
-
@mesh_tree.find('D009938') => 1.0, @mesh_tree.find('D004472') => 0.333, @mesh_tree.find('D014919') => 1.0, @mesh_tree.find('D000392') =>
|
|
190
|
+
@mesh_tree.find('D009938') => 1.0, @mesh_tree.find('D004472') => 0.333, @mesh_tree.find('D014919') => 1.0, @mesh_tree.find('D000392') => 0.333, @mesh_tree.find('D014887') => 0.444, @mesh_tree.find('D001272') => 0.185, @mesh_tree.find('D004777') => 0.169, @mesh_tree.find('D004778') => 0.056, @mesh_tree.find('D008685') => 0.210, @mesh_tree.find('D000388') => 0.111, @mesh_tree.find('D059205') => 0.333, @mesh_tree.find('D004736') => 0.111
|
|
191
191
|
}],
|
|
192
192
|
'V' => [1.0, {
|
|
193
193
|
@mesh_tree.find('D017203') => 1.0, @mesh_tree.find('D019215') => 0.333, @mesh_tree.find('D052181') => 0.111, @mesh_tree.find('D052180') => 0.148, @mesh_tree.find('D016456') => 0.111
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@@ -206,17 +206,17 @@ module MESH
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206
206
|
'A' => [2.0, {
|
|
207
207
|
@mesh_tree.find('D001769') => 1.0, @mesh_tree.find('D001826') => 0.333, @mesh_tree.find('D005441') => 0.111, @mesh_tree.find('D006424') => 0.333, @mesh_tree.find('D006624') => 1.0, @mesh_tree.find('D008032') => 0.333, @mesh_tree.find('D001921') => 0.115, @mesh_tree.find('D002490') => 0.038, @mesh_tree.find('D009420') => 0.013, @mesh_tree.find('D002540') => 0.333, @mesh_tree.find('D054022') => 0.111, @mesh_tree.find('D013687') => 0.037, @mesh_tree.find('D016548') => 0.012, @mesh_tree.find('D008099') => 2.0, @mesh_tree.find('D004064') => 1.0, @mesh_tree.find('D010179') => 1.0
|
|
208
208
|
}],
|
|
209
|
-
'D' => [4.
|
|
210
|
-
@mesh_tree.find('D000269') => 1.0, @mesh_tree.find('D020313') => 0.
|
|
209
|
+
'D' => [4.099, {
|
|
210
|
+
@mesh_tree.find('D000269') => 1.0, @mesh_tree.find('D020313') => 0.337, @mesh_tree.find('D020164') => 0.137, @mesh_tree.find('D000900') => 1.0, @mesh_tree.find('D000890') => 0.333, @mesh_tree.find('D045506') => 0.111, @mesh_tree.find('D020228') => 0.075, @mesh_tree.find('D001786') => 2.0, @mesh_tree.find('D005947') => 1.667, @mesh_tree.find('D006601') => 0.556, @mesh_tree.find('D009005') => 0.185, @mesh_tree.find('D002241') => 4.099, @mesh_tree.find('D004247') => 2.0, @mesh_tree.find('D009696') => 0.667, @mesh_tree.find('D009706') => 0.222, @mesh_tree.find('D006728') => 1.016, @mesh_tree.find('D006730') => 0.339, @mesh_tree.find('D045505') => 0.113, @mesh_tree.find('D007328') => 4.0, @mesh_tree.find('D011384') => 1.333, @mesh_tree.find('D061385') => 0.444, @mesh_tree.find('D010187') => 0.148, @mesh_tree.find('D036361') => 0.049, @mesh_tree.find('D010455') => 0.016, @mesh_tree.find('D000602') => 0.055, @mesh_tree.find('D011498') => 0.444, @mesh_tree.find('D011506') => 0.148, @mesh_tree.find('D013213') => 1.0, @mesh_tree.find('D005936') => 0.333, @mesh_tree.find('D001704') => 0.111, @mesh_tree.find('D011108') => 0.037, @mesh_tree.find('D046911') => 0.012, @mesh_tree.find('D001697') => 0.012, @mesh_tree.find('D011134') => 0.111
|
|
211
211
|
}],
|
|
212
212
|
'F' => [1.0, {
|
|
213
|
-
@mesh_tree.find('D005190') => 1.0, @mesh_tree.find('D011593') => 0.333, @mesh_tree.find('D001520') => 0.111, @mesh_tree.find('D011584') => 0.111, @mesh_tree.find('D001525') => 0.
|
|
213
|
+
@mesh_tree.find('D005190') => 1.0, @mesh_tree.find('D011593') => 0.333, @mesh_tree.find('D001520') => 0.111, @mesh_tree.find('D011584') => 0.111, @mesh_tree.find('D001525') => 0.074, @mesh_tree.find('D004191') => 0.025, @mesh_tree.find('D012961') => 0.333, @mesh_tree.find('D012942') => 0.111
|
|
214
214
|
}],
|
|
215
215
|
'G' => [1.0, {
|
|
216
|
-
@mesh_tree.find('D012621') => 1.0, @mesh_tree.find('D010507') => 0.333, @mesh_tree.find('D013995') => 0.111, @mesh_tree.find('D055585') => 0.037, @mesh_tree.find('D002909') => 0.111, @mesh_tree.find('D010829') => 0.037, @mesh_tree.find('D002980') => 0.
|
|
216
|
+
@mesh_tree.find('D012621') => 1.0, @mesh_tree.find('D010507') => 0.333, @mesh_tree.find('D013995') => 0.111, @mesh_tree.find('D055585') => 0.037, @mesh_tree.find('D002909') => 0.111, @mesh_tree.find('D010829') => 0.037, @mesh_tree.find('D002980') => 0.333, @mesh_tree.find('D004777') => 0.16, @mesh_tree.find('D055669') => 0.066, @mesh_tree.find('D001686') => 0.022, @mesh_tree.find('D001272') => 0.111, @mesh_tree.find('D008685') => 0.037
|
|
217
217
|
}],
|
|
218
218
|
'I' => [1.0, {
|
|
219
|
-
@mesh_tree.find('D005190') => 1.0, @mesh_tree.find('D012961') => 0.333, @mesh_tree.find('D012942') => 0.
|
|
219
|
+
@mesh_tree.find('D005190') => 1.0, @mesh_tree.find('D012961') => 0.333, @mesh_tree.find('D012942') => 0.111
|
|
220
220
|
}],
|
|
221
221
|
'J' => [1.0, {
|
|
222
222
|
@mesh_tree.find('D000269') => 1.0, @mesh_tree.find('D008420') => 0.444, @mesh_tree.find('D013676') => 0.148, @mesh_tree.find('D005389') => 1.0, @mesh_tree.find('D054041') => 0.333, @mesh_tree.find('D005502') => 1.0, @mesh_tree.find('D019602') => 0.333
|
|
@@ -225,7 +225,7 @@ module MESH
|
|
|
225
225
|
@mesh_tree.find('D005246') => 1.0, @mesh_tree.find('D003491') => 0.333, @mesh_tree.find('D003142') => 0.111, @mesh_tree.find('D007254') => 0.037
|
|
226
226
|
}],
|
|
227
227
|
'N' => [1.0, {
|
|
228
|
-
@mesh_tree.find('D012621') => 1.0, @mesh_tree.find('D002980') => 0.
|
|
228
|
+
@mesh_tree.find('D012621') => 1.0, @mesh_tree.find('D002980') => 0.333, @mesh_tree.find('D004777') => 0.16, @mesh_tree.find('D004778') => 0.053, @mesh_tree.find('D001272') => 0.111, @mesh_tree.find('D008685') => 0.037
|
|
229
229
|
}]
|
|
230
230
|
}
|
|
231
231
|
assert_classification expected, @classifier.classify([{matches: @headings[:short_content], weight: 1.0}])
|
|
@@ -244,20 +244,20 @@ module MESH
|
|
|
244
244
|
'A' => [2.0, {
|
|
245
245
|
@mesh_tree.find('D001769') => 1.0, @mesh_tree.find('D001826') => 0.333, @mesh_tree.find('D005441') => 0.111, @mesh_tree.find('D006424') => 0.333, @mesh_tree.find('D006624') => 1.0, @mesh_tree.find('D008032') => 0.333, @mesh_tree.find('D001921') => 0.115, @mesh_tree.find('D002490') => 0.038, @mesh_tree.find('D009420') => 0.013, @mesh_tree.find('D002540') => 0.333, @mesh_tree.find('D054022') => 0.111, @mesh_tree.find('D013687') => 0.037, @mesh_tree.find('D016548') => 0.012, @mesh_tree.find('D008099') => 2.0, @mesh_tree.find('D004064') => 1.0, @mesh_tree.find('D010179') => 1.0
|
|
246
246
|
}],
|
|
247
|
-
'D' => [4.
|
|
248
|
-
@mesh_tree.find('D000269') => 1.0, @mesh_tree.find('D020313') => 0.
|
|
247
|
+
'D' => [4.099, {
|
|
248
|
+
@mesh_tree.find('D000269') => 1.0, @mesh_tree.find('D020313') => 0.337, @mesh_tree.find('D020164') => 0.137, @mesh_tree.find('D000900') => 1.0, @mesh_tree.find('D000890') => 0.333, @mesh_tree.find('D045506') => 0.111, @mesh_tree.find('D020228') => 0.075, @mesh_tree.find('D001786') => 2.0, @mesh_tree.find('D005947') => 1.667, @mesh_tree.find('D006601') => 0.556, @mesh_tree.find('D009005') => 0.185, @mesh_tree.find('D002241') => 4.099, @mesh_tree.find('D004247') => 2.0, @mesh_tree.find('D009696') => 0.667, @mesh_tree.find('D009706') => 0.222, @mesh_tree.find('D006728') => 1.016, @mesh_tree.find('D006730') => 0.339, @mesh_tree.find('D045505') => 0.113, @mesh_tree.find('D007328') => 4.0, @mesh_tree.find('D011384') => 1.333, @mesh_tree.find('D061385') => 0.444, @mesh_tree.find('D010187') => 0.148, @mesh_tree.find('D036361') => 0.049, @mesh_tree.find('D010455') => 0.016, @mesh_tree.find('D000602') => 0.055, @mesh_tree.find('D011498') => 0.444, @mesh_tree.find('D011506') => 0.148, @mesh_tree.find('D013213') => 1.0, @mesh_tree.find('D005936') => 0.333, @mesh_tree.find('D001704') => 0.111, @mesh_tree.find('D011108') => 0.037, @mesh_tree.find('D046911') => 0.012, @mesh_tree.find('D001697') => 0.012, @mesh_tree.find('D011134') => 0.111
|
|
249
249
|
}],
|
|
250
250
|
'F' => [1.0, {
|
|
251
|
-
@mesh_tree.find('D005190') => 1.0, @mesh_tree.find('D011593') => 0.333, @mesh_tree.find('D001520') => 0.111, @mesh_tree.find('D011584') => 0.111, @mesh_tree.find('D001525') => 0.
|
|
251
|
+
@mesh_tree.find('D005190') => 1.0, @mesh_tree.find('D011593') => 0.333, @mesh_tree.find('D001520') => 0.111, @mesh_tree.find('D011584') => 0.111, @mesh_tree.find('D001525') => 0.074, @mesh_tree.find('D004191') => 0.025, @mesh_tree.find('D012961') => 0.333, @mesh_tree.find('D012942') => 0.111
|
|
252
252
|
}],
|
|
253
253
|
'G' => [1.0, {
|
|
254
|
-
@mesh_tree.find('D012621') => 1.0, @mesh_tree.find('D010507') => 0.333, @mesh_tree.find('D013995') => 0.111, @mesh_tree.find('D055585') => 0.037, @mesh_tree.find('D002909') => 0.111, @mesh_tree.find('D010829') => 0.037, @mesh_tree.find('D002980') => 0.
|
|
254
|
+
@mesh_tree.find('D012621') => 1.0, @mesh_tree.find('D010507') => 0.333, @mesh_tree.find('D013995') => 0.111, @mesh_tree.find('D055585') => 0.037, @mesh_tree.find('D002909') => 0.111, @mesh_tree.find('D010829') => 0.037, @mesh_tree.find('D002980') => 0.333, @mesh_tree.find('D004777') => 0.160, @mesh_tree.find('D055669') => 0.066, @mesh_tree.find('D001686') => 0.022, @mesh_tree.find('D001272') => 0.111, @mesh_tree.find('D008685') => 0.037
|
|
255
255
|
}],
|
|
256
256
|
'H' => [7.0, {
|
|
257
257
|
@mesh_tree.find('D002309') => 7.0, @mesh_tree.find('D007388') => 2.333, @mesh_tree.find('D008511') => 0.778, @mesh_tree.find('D006281') => 0.259
|
|
258
258
|
}],
|
|
259
259
|
'I' => [3.0, {
|
|
260
|
-
@mesh_tree.find('D013337') => 3.0, @mesh_tree.find('D013336') =>
|
|
260
|
+
@mesh_tree.find('D013337') => 3.0, @mesh_tree.find('D013336') => 1.0, @mesh_tree.find('D013334') => 0.333, @mesh_tree.find('D004505') => 0.111, @mesh_tree.find('D004493') => 0.148, @mesh_tree.find('D005190') => 1.0, @mesh_tree.find('D012961') => 0.333, @mesh_tree.find('D012942') => 0.111
|
|
261
261
|
}],
|
|
262
262
|
'J' => [1.0, {
|
|
263
263
|
@mesh_tree.find('D000269') => 1.0, @mesh_tree.find('D008420') => 0.444, @mesh_tree.find('D013676') => 0.148, @mesh_tree.find('D005389') => 1.0, @mesh_tree.find('D054041') => 0.333, @mesh_tree.find('D005502') => 1.0, @mesh_tree.find('D019602') => 0.333
|
|
@@ -266,10 +266,10 @@ module MESH
|
|
|
266
266
|
@mesh_tree.find('D005246') => 1.0, @mesh_tree.find('D003491') => 0.333, @mesh_tree.find('D003142') => 0.111, @mesh_tree.find('D007254') => 0.037
|
|
267
267
|
}],
|
|
268
268
|
'M' => [3.0, {
|
|
269
|
-
@mesh_tree.find('D013337') => 3.0, @mesh_tree.find('D013336') =>
|
|
269
|
+
@mesh_tree.find('D013337') => 3.0, @mesh_tree.find('D013336') => 1.0, @mesh_tree.find('D013334') => 0.333, @mesh_tree.find('D009272') => 0.111
|
|
270
270
|
}],
|
|
271
271
|
'N' => [1.0, {
|
|
272
|
-
@mesh_tree.find('D012621') => 1.0, @mesh_tree.find('D002980') => 0.
|
|
272
|
+
@mesh_tree.find('D012621') => 1.0, @mesh_tree.find('D002980') => 0.333, @mesh_tree.find('D004777') => 0.16, @mesh_tree.find('D004778') => 0.053, @mesh_tree.find('D001272') => 0.111, @mesh_tree.find('D008685') => 0.037
|
|
273
273
|
}]
|
|
274
274
|
}
|
|
275
275
|
|
data/test/mesh_core_test.rb
CHANGED
|
@@ -142,6 +142,13 @@ module MESH
|
|
|
142
142
|
assert_includes mh.parents, p2
|
|
143
143
|
end
|
|
144
144
|
|
|
145
|
+
def test_have_the_correct_parents_again
|
|
146
|
+
child = @mesh_tree.find_by_original_heading('Questionnaires')
|
|
147
|
+
assert_equal 1, child.parents.length
|
|
148
|
+
expected_parent = @mesh_tree.find_by_original_heading('Data Collection')
|
|
149
|
+
assert_includes child.parents, expected_parent
|
|
150
|
+
end
|
|
151
|
+
|
|
145
152
|
def test_have_the_correct_children
|
|
146
153
|
parent = @mesh_tree.find_by_tree_number('C19.053.500')
|
|
147
154
|
child1 = @mesh_tree.find_by_tree_number('C19.053.500.263')
|
|
@@ -156,6 +163,33 @@ module MESH
|
|
|
156
163
|
assert_includes parent.children, child4
|
|
157
164
|
end
|
|
158
165
|
|
|
166
|
+
def test_have_the_correct_children_again
|
|
167
|
+
parent = @mesh_tree.find_by_original_heading('Data Collection')
|
|
168
|
+
|
|
169
|
+
expected_children = [
|
|
170
|
+
'Health Surveys',
|
|
171
|
+
'Interviews as Topic',
|
|
172
|
+
'Questionnaires',
|
|
173
|
+
'Records as Topic',
|
|
174
|
+
'Registries',
|
|
175
|
+
'Vital Statistics',
|
|
176
|
+
'Geriatric Assessment',
|
|
177
|
+
'Nutrition Assessment',
|
|
178
|
+
'Health Care Surveys',
|
|
179
|
+
'Narration',
|
|
180
|
+
'Lot Quality Assurance Sampling',
|
|
181
|
+
'Checklist',
|
|
182
|
+
'Health Impact Assessment',
|
|
183
|
+
'Crowdsourcing'
|
|
184
|
+
].map { |oh| @mesh_tree.find_by_original_heading(oh) }
|
|
185
|
+
|
|
186
|
+
|
|
187
|
+
assert_equal expected_children.length, parent.children.length
|
|
188
|
+
expected_children.each do |ec|
|
|
189
|
+
assert_includes parent.children, ec
|
|
190
|
+
end
|
|
191
|
+
end
|
|
192
|
+
|
|
159
193
|
def test_have_the_correct_siblings
|
|
160
194
|
skip
|
|
161
195
|
end
|
metadata
CHANGED
|
@@ -1,14 +1,14 @@
|
|
|
1
1
|
--- !ruby/object:Gem::Specification
|
|
2
2
|
name: mesh-medical-subject-headings
|
|
3
3
|
version: !ruby/object:Gem::Version
|
|
4
|
-
version: 2.0.
|
|
4
|
+
version: 2.0.2
|
|
5
5
|
platform: ruby
|
|
6
6
|
authors:
|
|
7
7
|
- Rob Styles
|
|
8
8
|
autorequire:
|
|
9
9
|
bindir: bin
|
|
10
10
|
cert_chain: []
|
|
11
|
-
date: 2014-
|
|
11
|
+
date: 2014-06-23 00:00:00.000000000 Z
|
|
12
12
|
dependencies:
|
|
13
13
|
- !ruby/object:Gem::Dependency
|
|
14
14
|
name: bundler
|
|
@@ -149,7 +149,7 @@ required_rubygems_version: !ruby/object:Gem::Requirement
|
|
|
149
149
|
version: '0'
|
|
150
150
|
requirements: []
|
|
151
151
|
rubyforge_project:
|
|
152
|
-
rubygems_version: 2.
|
|
152
|
+
rubygems_version: 2.0.14
|
|
153
153
|
signing_key:
|
|
154
154
|
specification_version: 4
|
|
155
155
|
summary: A ruby gem containing MeSH subject headings (https://www.nlm.nih.gov/mesh/)
|