mathjax-yard 0.1.0

checksums.yaml

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+---
+SHA1:
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+  data.tar.gz: 6e43bb51651c7bd13a80fbbac93152da3405a121
+SHA512:
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data/.gitignore

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+/.bundle/
+/.yardoc
+/Gemfile.lock
+/_yardoc/
+/coverage/
+/doc/
+/pkg/
+/spec/reports/
+/tmp/

data/.rspec

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+--format documentation
+--color

data/.travis.yml

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+language: ruby
+rvm:
+  - 2.2.2
+before_install: gem install bundler -v 1.11.2

data/.yardopts

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+-t mathjax -p templates
+-
+spec/*.mjx.md
+
+

data/CODE_OF_CONDUCT.md

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+# Contributor Code of Conduct
+
+As contributors and maintainers of this project, and in the interest of
+fostering an open and welcoming community, we pledge to respect all people who
+contribute through reporting issues, posting feature requests, updating
+documentation, submitting pull requests or patches, and other activities.
+
+We are committed to making participation in this project a harassment-free
+experience for everyone, regardless of level of experience, gender, gender
+identity and expression, sexual orientation, disability, personal appearance,
+body size, race, ethnicity, age, religion, or nationality.
+
+Examples of unacceptable behavior by participants include:
+
+* The use of sexualized language or imagery
+* Personal attacks
+* Trolling or insulting/derogatory comments
+* Public or private harassment
+* Publishing other's private information, such as physical or electronic
+  addresses, without explicit permission
+* Other unethical or unprofessional conduct
+
+Project maintainers have the right and responsibility to remove, edit, or
+reject comments, commits, code, wiki edits, issues, and other contributions
+that are not aligned to this Code of Conduct, or to ban temporarily or
+permanently any contributor for other behaviors that they deem inappropriate,
+threatening, offensive, or harmful.
+
+By adopting this Code of Conduct, project maintainers commit themselves to
+fairly and consistently applying these principles to every aspect of managing
+this project. Project maintainers who do not follow or enforce the Code of
+Conduct may be permanently removed from the project team.
+
+This code of conduct applies both within project spaces and in public spaces
+when an individual is representing the project or its community.
+
+Instances of abusive, harassing, or otherwise unacceptable behavior may be
+reported by contacting a project maintainer at shigeto_nishitani@me.com. All
+complaints will be reviewed and investigated and will result in a response that
+is deemed necessary and appropriate to the circumstances. Maintainers are
+obligated to maintain confidentiality with regard to the reporter of an
+incident.
+
+This Code of Conduct is adapted from the [Contributor Covenant][homepage],
+version 1.3.0, available at
+[http://contributor-covenant.org/version/1/3/0/][version]
+
+[homepage]: http://contributor-covenant.org
+[version]: http://contributor-covenant.org/version/1/3/0/

data/Gemfile

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+source 'https://rubygems.org'
+
+# Specify your gem's dependencies in mathjax-yard.gemspec
+gemspec

data/LICENSE.txt

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+The MIT License (MIT)
+
+Copyright (c) 2016 Shigeto R. Nishitani
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in
+all copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
+THE SOFTWARE.

data/README.md

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+# MathJaxYard
+
+mathjax-yard is a mathjax extension for markdown in yard.
+
+## Installation
+
+Add this line to your application's Gemfile:
+
+```ruby
+gem 'mathjax-yard'
+```
+
+And then execute:
+
+    $ bundle
+
+Or install it yourself as:
+
+    $ gem install mathjax-yard
+
+## Usage
+
+mathjax-yard is intended to be a command line tool, using in Rakefile as follows.
+
+```
+desc "make documents by yard"
+task :yard do
+  system('mathjax-yard')
+  YARD::Rake::YardocTask.new
+end
+
+desc "make documents with yardmath"
+task :mathjax do
+  system('mathjax-yard --post')
+end
+```
+mathjax-yard search ./*/*.md and replace '$...$' or '$$...$$' to $MATHJAX**$ tags, and make 'mathjax.yml' for storing these relations.  After the normal YARD operation has done, 'mathjax-yard --post' replacement will be done on 'doc/file.*.html'.  The yard options are
+
+```
+-t mathjax -p templates
+-
+spec/*.md
+```
+
+The mathjax layout should be included in yard layout.
+
+
+## Development
+
+After checking out the repo, run `bin/setup` to install dependencies. Then, run `rake spec` to run the tests. You can also run `bin/console` for an interactive prompt that will allow you to experiment. Run `bundle exec mathjax-yard` to use the gem in this directory, ignoring other installed copies of this gem.
+
+To install this gem onto your local machine, run `bundle exec rake install`. To release a new version, update the version number in `version.rb`, and then run `bundle exec rake release`, which will create a git tag for the version, push git commits and tags, and push the `.gem` file to [rubygems.org](https://rubygems.org).
+
+## Contributing
+
+Bug reports and pull requests are welcome on GitHub at https://github.com/[USERNAME]/mathjax-yard. This project is intended to be a safe, welcoming space for collaboration, and contributors are expected to adhere to the [Contributor Covenant](http://contributor-covenant.org) code of conduct.
+
+
+## License
+
+The gem is available as open source under the terms of the [MIT License](http://opensource.org/licenses/MIT).

data/Rakefile

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+require "bundler/gem_tasks"
+require "rspec/core/rake_task"
+require 'yard'
+
+RSpec::Core::RakeTask.new(:spec)
+
+task :default => :spec
+
+desc "make documents by yard"
+task :yard do
+  system('mathjax-yard')
+  YARD::Rake::YardocTask.new
+end
+
+desc "make documents with yardmath"
+task :mathjax do
+  system('mathjax-yard --post')
+end

data/bin/console

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+#!/usr/bin/env ruby
+
+require "bundler/setup"
+require "mathjax/yard"
+
+# You can add fixtures and/or initialization code here to make experimenting
+# with your gem easier. You can also use a different console, if you like.
+
+# (If you use this, don't forget to add pry to your Gemfile!)
+# require "pry"
+# Pry.start
+
+require "irb"
+IRB.start

data/bin/setup

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+#!/usr/bin/env bash
+set -euo pipefail
+IFS=$'\n\t'
+set -vx
+
+bundle install
+
+# Do any other automated setup that you need to do here

data/docs/README_ja.md

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+# MathJaxYard
+
+mathjax-yardはyardによるmarkdown変換においてmathjaxを使えるようにする拡張機能です．
+
+## Installation
+
+Add this line to your application's Gemfile:
+
+```ruby
+gem 'mathjax-yard'
+```
+
+And then execute:
+
+    $ bundle
+
+Or install it yourself as:
+
+    $ gem install mathjax-yard
+
+## Usage
+
+mathjax-yardはcommand line toolとしての使用を意図して作られています．例えば，Rakefileでの使用例は次の通りです．
+
+```
+desc "make documents by yard"
+task :yard do
+  system('mathjax-yard')
+  YARD::Rake::YardocTask.new
+end
+
+desc "make documents with yardmath"
+task :mathjax do
+  system('mathjax-yard --post')
+end
+```
+
+yardのデフォルトでの動作をなぞって，動作するように作られています．
+* mathjax-yardは./*/*.mdを探索し，それらの中に'$...$'あるいは'$$...$$'があると$MATHJAX**$というタグに付け替え，
+* *.md.backとしたファイルに元ファイルのバックアップを取り，*.mdにタグ付け替えした内容を保存します．
+*また，同時に，  'mathjax.yml'にそれらのhash関係をyaml形式で保存します．
+* 通常のrake yardで変換したのち，
+* 'mathjax-yard --post'によって，'doc/file.*.html'に残されたtagを元に戻します．
+* また同時に，backファイルを元に戻します．
+
+yardのoptionは，.yardoptsに
+
+```
+-t mathjax -p templates
+-
+spec/*.md
+```
+
+としています．また，htmlのhead部分にmathjaxのscriptを埋め込んだlayoutを用意しています．
+
+```csh
+bob% bundle exec exe/mathjax-yard --help
+Usage: yardmath [options] [DIRECTORY]
+    -v, --version                    show program Version.
+    -r, --revert                     revert mjx file to orig file.
+    -p, --post                       post operation.
+```
+
+## Development
+
+After checking out the repo, run `bin/setup` to install dependencies. Then, run `rake spec` to run the tests. You can also run `bin/console` for an interactive prompt that will allow you to experiment. Run `bundle exec mathjax-yard` to use the gem in this directory, ignoring other installed copies of this gem.
+
+To install this gem onto your local machine, run `bundle exec rake install`. To release a new version, update the version number in `version.rb`, and then run `bundle exec rake release`, which will create a git tag for the version, push git commits and tags, and push the `.gem` file to [rubygems.org](https://rubygems.org).
+
+## Contributing
+
+Bug reports and pull requests are welcome on GitHub at https://github.com/[USERNAME]/mathjax-yard. This project is intended to be a safe, welcoming space for collaboration, and contributors are expected to adhere to the [Contributor Covenant](http://contributor-covenant.org) code of conduct.
+
+
+## License
+
+The gem is available as open source under the terms of the [MIT License](http://opensource.org/licenses/MIT).

data/docs/atom.md

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+# 概要
+# EAM
+EAM(Embedded atom method)は1980年代以降に，盛んに使われるようになった経験的原子間ポテンシャルである．
+
+## エネルギー表記
+EAMは原子$i$のエネルギーを
+
+$$
+E_i = \sum_j\phi \left( r_j \right) + f(\rho)
+$$
+
+と表記する．右辺第1項は単なる2体間の相互作用を表わす．
+右辺第2項が多体項と呼ばれるEAMに特徴的な項である．
+この工夫によって原子空孔を初め多くの金属物性を
+うまく表現することが可能となった．詳しくは西谷・赤本参照．
+
+さて，$r_j$はこの場合原子$j$との距離を意味しており，$E_i$は原子$i$の周りの原子との和によって求まる．多体項は，一般的に
+
+$$
+f(\rho) =\sqrt{\rho}=\sqrt{\sum_j h^2 \left( r_j \right) }
+$$
+
+によって求められる．$\rho$は強結合(tight binding)理論の2次モーメント近似と捉えると，電子密度を表わすとされている．
+
+## 具体例
+### for phi(r0)=-3.39, Ev=0.8, p=3.0 at r0=2.8577
+```maple
+
+A0,B0,P,POQ,Q:=69.1378255, 12.47431958,
+2.148157653, 2.893854749, 0.7423170267;
+
+-3.39*32;
+                            -108.48
+```
+```
+n:=12;
+ene:=r->n*A0*exp(-P*r);
+h:=r->B0*exp(-Q*r);
+rho:=r->12*h(r)^2;
+plot(ene(r)-sqrt(rho(r)),r=2..4);
+```
+![](eam_ev_plot.gif)
+```
+r0:=fsolve(diff(ene(r)-sqrt(rho(r)),r),r=3);
+                          2.857701344
+evalf(subs(r=r0,ene(r)-sqrt(rho(r))));
+                          -3.390000002
+```
+```math
+E_i = \sum _ j\phi \left( r_{{j}} \right) + \h \left( r_{{j}} \right)
+```
+
+# LJ
+LJ(Lennard-Jones)はもっとも簡単な2体のポテンシャル．
+
+## エネルギー表記
+
+## 具体例
+```maple
+A0:=1.587401051*0.7071067812/2.857701314;
+E0:=-1*4.0/12.0;
+
+A:=18.19007708;
+B:=89.22765864;
+phi:=r-> 12*(-A*(1/r**3)+B*(1/r**5));
+r0:=fsolve(diff(phi(r),r),r=3);
+                          2.859281101
+phi(r0);
+                          -3.735125644
+```
+
+![](lj_ev_plot.gif)
+
+# EAM fitting
+
+EAM potentialの種々の構築手法を詳解する．
+## background
+MCにおいて$NPT$一定の計算がうまくいっていない．
+- 覚埜式の$E-V$プロットをすると小体積でのエネルギの上がりが低い．
+- $T=0.1$[eV]で融けているよう
+なので，もう少し精密にEAMポテンシャルを構築してみる．
+
+## poq fixed
+
+EAM potentialにおいて単原子空孔の生成エネルギ$E_v$は
+
+$$
+E_v = -\frac{E_c}{2} \frac{2-poq}{1-poq}
+$$
+
+の関係がある．したがって，
+```maple
+Ev:=0.8;                         
+Ec:=3.39;                    
+eq1:=Ev=Ec/2*(2-poq)/(1-poq);
+solve(eq1,poq);              
+                          2.893854749
+```
+
+さらにこの値を使ってポテンシャルのパラメータを求めるのは以下の通り．ここで，$q$を設定している．
+
+```
+phi:=r->12.0*A*exp(-p*r)-sqrt(12.0*(B*exp(-q*r))^2);
+poq:=2.893854749;
+q:=3.00*0.2474390089;
+a0:=8.0828/2;     
+r0:=evalf(a0*sqrt(2)/2.0); #2.857701345
+eq1:=phi(r0)=-3.39;
+s2:=solve(eq1,A);
+p:=poq*q; #2.148157653
+eq2:=subs(r=r0,diff(phi(r),r));
+#plot(subs(A=s2,eq2),B=0..20);
+b0:=fsolve(subs(A=s2,eq2),B=10);
+a0:=subs(B=b0,s2);
+phi0:=unapply(subs({A=a0,B=b0},phi(r)),r);
+plot(phi0(r),r=2..5);
+phi0(r0);
+a0,b0,p,poq,q;
+#69.1378255, 12.47431958, 2.148157653, 2.893854749, 0.7423170267
+```
+![](eam_ev.png)

data/docs/potential2.md

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+# lj0
+標準的なLennard-Jonesポテンシャルの表式
+
+$$ F(s)=\int_{0}^{\infty}f(t)e^{-st}dt $$
+
+```
+bob% cat POTCAR
+---
+:type: lj0
+:element: Al
+:a0:  1.587401051*0.7071067812/2.857701314;
+:e0:  -1*4.0/12.0;
+:a:   18.19007708
+:b:   89.22765864
+:p:   3.0
+:q:   5.0
+:cut_off: 4.0*0.8
+:energy:  -a*(1/r**p)+b*(1/r**q)
+:dedr:    (p*a/r**(p+1.0))-(q*b/r**(q+1.0))
+```
+# lj_jindo
+神藤先生あるいはVu Van Huangが使っていたLennard-Jonesポテンシャルの表式．
+```ruby
+bob% cat POTCAR_jindo_Cu
+---
+:type: lj_jindo
+:element: Cu
+:d0:   4125.70
+:n:   9.00
+:m:   5.50
+:r0:   2.5487e-8
+:alat:   3.6153e-8
+:atom_mass:   63.5460/6.023e23
+:energy:  d0*((r/r0)^(-n)*m-(r/r0)^(-m)*n)/(m-n)
+:dedr:    d0*m*n*((r/r0)^(-m)-(r/r0)^(-n))/(r*(m-n))
+```
+```
+Cu
+d0 := 4125.70;
+vn := 9.00;
+vm := 5.50;
+r0 := 2.5487e-8;
+rh:=r0/rr;
+dedr:=unapply(-d0*vm*vn / ((vn-vm)*rr) * (rh**vn - rh**vm),rr);
+eq1:=int(dedr(r),r);
+func:=unapply(eq1,rr);
+r1:=2.5487*10^(-8)*0.8;
+r2:=2.5487*10^(-8)*1.5;
+plot(8.617385e-05*func(r),r=r1..r2);
+```
+```ruby
+ dedr:=unapply(-d0*vm*vn / ((vn-vm)*rr) * (rh**vn - rh**vm),rr);
+ eq1:=int(dedr(r),r);
+-{ 1.821482757\times 10^{-38}} r{-5.5}+
+{ 2.942122564\times 10^{-65}} r^{-9}
+```
+```ruby
+rh:=r0/rr;
+dedr:=normal(expand(d0*vm*vn / ((vn-vm)*rr) * (rh**vn - rh**vm)));
+eq1:=simplify(int(dedr,rr));
+```
+
+$$
+
+r_1=r/r_0
+
+\frac{ d_0 \left( r_1^{-n}m-  r_1^{-m} n \right) }{ -n + m }
+$$
+
+# ポテンシャル選択機構
+module LJに記述
+```ruby
+  def select(file='POTCAR')
+#    p src = YAML.load_file(ARGV[0])
+    p src = YAML.load_file(file)
+    @@potential=case src[:type]
+              when 'lj0'
+                LJ0.new(src)
+              when 'lj_jindo'
+                LJ_Jindo.new(src)
+              end
+  end
+```
+- 委譲による選択
+  - pseudovasp.rbにLJ.select('POTCAR')がある．
+  - LJ0あるいはLJ_Jindoをclassとして用意．
+- POTCARへのYAMLでの記述
+- クラス変数によるクラス共通の変数定義
+
+EAMとの統一を考えたが，energy, forceのmethodの選択を
+どっかでしないとダメで，その綺麗なやり方が思いつかず，
+そのままにした．
+
+```ruby
+class EAMAtom < Atom
+  include EAM
+end
+
+class LJAtom < Atom
+  include LJ
+end
+```
+となっており，ほぼ元どおり．

data/exe/mathjax-yard

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+#!/usr/bin/env ruby
+
+require "mathjax-yard"
+
+MathJaxYard::Command.run(ARGV)

data/lib/mathjax-yard.rb

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+require "mathjax-yard/version"
+require 'optparse'
+require 'yaml'
+require 'fileutils'
+
+
+module MathJaxYard
+    # Your code goes here...
+  class Command
+    def self.run(argv=[])
+      new(argv).execute
+    end
+
+    def initialize(argv=[])
+      @argv = argv
+      @eq_data=Hash.new
+      @eq_number =0
+      @revert = false
+    end
+
+    def execute
+      # @argv << '--help' if @argv.size==0
+      command_parser = OptionParser.new do |opt|
+        opt.on('-v', '--version','show program Version.') { |v|
+          opt.version = Yardmath::VERSION
+          puts opt.ver
+          exit
+        }
+        opt.on('-r', '--revert','revert mjx file to orig file.') {
+          directory = @argv[0]==nil ? 'lib/../*/*.md.back' : @argv[0]
+          revert(directory)
+          exit
+        }
+        opt.on('-p', '--post','post operation.') {
+          post_operation
+          directory = @argv[0]==nil ? 'lib/../*/*.md.back' : @argv[0]
+          revert(directory)
+          exit
+        }
+      end
+      command_parser.banner = "Usage: yardmath [options] [DIRECTORY]"
+      command_parser.parse!(@argv)
+      directory = @argv[0]==nil ? 'lib/../*/*.md' : @argv[0]
+      convert(directory)
+      exit
+    end
+
+    def post_operation
+      file = File.open("./mathjax.yml",'r')
+      src = file.read
+      p data = YAML.load(src)
+      data.each_pair{|file, tags|
+        File.basename(file).scan(/(.+)\.md/)
+        p basename = $1
+        target = "./doc/file.#{basename}.html"
+        file = File.open(target,'r')
+        src = file.read
+        file.close
+        tags.each_pair{|tag,eq|
+          src.gsub!(tag,eq)
+        }
+        file = File.open(target,'w')
+        file.print(src)
+        file.close
+      }
+    end
+
+    def revert(directory)
+      files = Dir.glob(directory)
+      files.each{|file|
+        p b_file = file
+        file.scan(/(.+).back$/)
+        p t_file = $1
+        FileUtils.mv(b_file,t_file)
+      }
+    end
+
+    def convert(directory)
+      files = Dir.glob(directory)
+      files.each{|file|
+        @eq_data[file] = Hash.new
+        lines = File.readlines(file)
+        output = mk_tags(lines,file)
+        if @eq_data[file].size ==0
+          @eq_data.delete(file) 
+        else
+          write_output_on_target(file,output)
+#          write_output_on_backup(file,output,'.mjx')
+        end
+      }
+      save_yaml(@eq_data,"mathjax.yml")
+    end
+
+    def write_output_on_backup(file,output,extention='.mjx')
+      file.scan(/(.+)\.md/)
+      p basename = $1
+      b_file = File.open(basename+extention+'.md','w')
+      b_file.print output
+      b_file.close
+    end
+
+    def write_output_on_target(file,output)
+      b_file = file+'.back'
+      FileUtils.mv(file,b_file)
+      t_file = File.open(file,'w')
+      t_file.print output
+      t_file.close
+    end
+
+    def save_yaml(data,file)
+      print yaml_data=YAML.dump(data)
+      math_file = File.open(file,'w')
+      math_file.print(yaml_data)
+      math_file.close
+    end
+
+    def mk_tags(lines,file_name)
+      @in_eq_block = false
+      output,stored_eq="",""
+      lines.each{|line|
+        if @in_eq_block #inside in eq block
+          if line =~/^\$\$/ #closing
+            stored_eq << "$"
+            output << store_eq_data(stored_eq,file_name)
+            stored_eq=""
+            @in_eq_block = !@in_eq_block
+          else #normal op. in eq block
+            p stored_eq << line
+          end
+        else #outside eq block
+          if line =~ /\$(.+)\$/ #normal op. in line eq.
+            p converted =check_multiple_match($1,file_name)
+            output <<  $`+converted+$'
+          elsif line =~/^\$\$/ # opening in eq block
+            p line
+            @in_eq_block = !@in_eq_block
+            stored_eq << "$"
+          else  #normal op (no eq)
+            output << line
+          end
+        end
+      }
+      return output
+    end
+
+    def store_eq_data(equation,file_name)
+      @eq_number+=1
+      tag="$MATHJAX#{@eq_number}$"
+      @eq_data[file_name][tag] = "$#{equation}$"
+      return tag
+    end
+
+    def check_multiple_match(line,file)
+      if !line.include?('$') or
+          (line=~/^\$(.+)\$$/) then
+        return store_eq_data(line,file)
+      end
+      inline_eq = true
+      equation,text="",""
+      line.each_char{|char|
+        if char == '$'
+          if inline_eq then
+            text << store_eq_data(equation,file)
+            equation = ""
+          else
+          end
+          inline_eq = !inline_eq
+        else
+          inline_eq ? equation << char : text << char
+        end
+      }
+      text << store_eq_data(equation,file)
+      return text
+    end
+  end
+end
+

data/lib/mathjax-yard/version.rb

@@ -0,0 +1,3 @@
+module MathJaxYard
+    VERSION = "0.1.0"
+end

data/mathjax-yard.gemspec

@@ -0,0 +1,34 @@
+# coding: utf-8
+lib = File.expand_path('../lib', __FILE__)
+$LOAD_PATH.unshift(lib) unless $LOAD_PATH.include?(lib)
+require 'mathjax-yard/version'
+
+Gem::Specification.new do |spec|
+  spec.name          = "mathjax-yard"
+  spec.version       = MathJaxYard::VERSION
+  spec.authors       = ["Shigeto R. Nishitani"]
+  spec.email         = ["shigeto_nishitani@me.com"]
+
+  spec.summary       = %q{mathjax-yard provides mathjax extention to yard.}
+  spec.description   = %q{mathjax-yard provides mathjax extention to yard.}
+  spec.homepage      = "http://nishitani0.kwansei.ac.jp/Open/mathjax-yad"
+  spec.license       = "MIT"
+
+  # Prevent pushing this gem to RubyGems.org by setting 'allowed_push_host', or
+  # delete this section to allow pushing this gem to any host.
+#  if spec.respond_to?(:metadata)
+#    spec.metadata['allowed_push_host'] = "TODO: Set to 'http://mygemserver.com'"
+#  else
+#    raise "RubyGems 2.0 or newer is required to protect against public gem pushes."
+#  end
+
+  spec.files         = `git ls-files -z`.split("\x0").reject { |f| f.match(%r{^(test|spec|features)/}) }
+  spec.bindir        = "exe"
+  spec.executables   = spec.files.grep(%r{^exe/}) { |f| File.basename(f) }
+  spec.require_paths = ["lib"]
+
+  spec.add_development_dependency "bundler", "~> 1.11"
+  spec.add_development_dependency "rake", "~> 10.0"
+  spec.add_development_dependency "rspec", "~> 3.0"
+  spec.add_development_dependency "yard", "~> 0.8"  
+end

data/mathjax.yml

@@ -0,0 +1,30 @@
+---
+lib/../docs/atom.md:
+  "$MATHJAX1$": "$i$"
+  "$MATHJAX2$": |-
+    $$E_i = \sum_j\phi \left( r_j \right) + f(\rho)
+    $$
+  "$MATHJAX3$": "$r_j$"
+  "$MATHJAX4$": "$j$"
+  "$MATHJAX5$": "$E_i$"
+  "$MATHJAX6$": "$i$"
+  "$MATHJAX7$": |-
+    $$f(\rho) =\sqrt{\rho}=\sqrt{\sum_j h^2 \left( r_j \right) }
+    $$
+  "$MATHJAX8$": "$\\rho$"
+  "$MATHJAX9$": "$NPT$"
+  "$MATHJAX10$": "$E-V$"
+  "$MATHJAX11$": "$T=0.1$"
+  "$MATHJAX12$": "$E_v$"
+  "$MATHJAX13$": |-
+    $$E_v = -\frac{E_c}{2} \frac{2-poq}{1-poq}
+    $$
+  "$MATHJAX14$": "$q$"
+lib/../docs/potential2.md:
+  "$MATHJAX15$": "$$ F(s)=\\int_{0}^{\\infty}f(t)e^{-st}dt $$"
+  "$MATHJAX16$": |-
+    $$
+    r_1=r/r_0
+
+    \frac{ d_0 \left( r_1^{-n}m-  r_1^{-m} n \right) }{ -n + m }
+    $$

metadata

@@ -0,0 +1,121 @@
+--- !ruby/object:Gem::Specification
+name: mathjax-yard
+version: !ruby/object:Gem::Version
+  version: 0.1.0
+platform: ruby
+authors:
+- Shigeto R. Nishitani
+autorequire: 
+bindir: exe
+cert_chain: []
+date: 2016-06-21 00:00:00.000000000 Z
+dependencies:
+- !ruby/object:Gem::Dependency
+  name: bundler
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '1.11'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '1.11'
+- !ruby/object:Gem::Dependency
+  name: rake
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '10.0'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '10.0'
+- !ruby/object:Gem::Dependency
+  name: rspec
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '3.0'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '3.0'
+- !ruby/object:Gem::Dependency
+  name: yard
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '0.8'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '0.8'
+description: mathjax-yard provides mathjax extention to yard.
+email:
+- shigeto_nishitani@me.com
+executables:
+- mathjax-yard
+extensions: []
+extra_rdoc_files: []
+files:
+- ".gitignore"
+- ".rspec"
+- ".travis.yml"
+- ".yardopts"
+- CODE_OF_CONDUCT.md
+- Gemfile
+- LICENSE.txt
+- README.md
+- Rakefile
+- bin/console
+- bin/setup
+- docs/README_ja.md
+- docs/atom.md
+- docs/potential2.md
+- exe/mathjax-yard
+- lib/mathjax-yard.rb
+- lib/mathjax-yard/version.rb
+- mathjax-yard.gemspec
+- mathjax.yml
+homepage: http://nishitani0.kwansei.ac.jp/Open/mathjax-yad
+licenses:
+- MIT
+metadata: {}
+post_install_message: 
+rdoc_options: []
+require_paths:
+- lib
+required_ruby_version: !ruby/object:Gem::Requirement
+  requirements:
+  - - ">="
+    - !ruby/object:Gem::Version
+      version: '0'
+required_rubygems_version: !ruby/object:Gem::Requirement
+  requirements:
+  - - ">="
+    - !ruby/object:Gem::Version
+      version: '0'
+requirements: []
+rubyforge_project: 
+rubygems_version: 2.5.1
+signing_key: 
+specification_version: 4
+summary: mathjax-yard provides mathjax extention to yard.
+test_files: []
+has_rdoc: