mascot-mgf 0.2.1 → 0.2.2

data/.gitignore

@@ -1,4 +1,5 @@
 pkg/*
 *.gem
 .bundle
-*.idx
+*.idx
+Gemfile.lock

data/lib/mascot/mgf/version.rb

@@ -1,5 +1,5 @@
 module Mascot
-  class MGF
-    VERSION = "0.2.1"
+  class MGF < File
+    VERSION = "0.2.2"
   end
 end

data/lib/mascot/mgf.rb

@@ -39,6 +39,7 @@ module Mascot
     #   end
     # end
 
+    # 0-based index
     def query(n=nil)
       Mascot::MGF::Query.new(self.readquery(n))
     end

data/mascot-mgf.gemspec

@@ -16,4 +16,5 @@ Gem::Specification.new do |s|
   s.test_files    = `git ls-files -- {test,spec,features}/*`.split("\n")
   s.executables   = `git ls-files -- bin/*`.split("\n").map{ |f| File.basename(f) }
   s.require_paths = ["lib"]
+  s.add_development_dependency "rake"
 end

data/test/test_mascot-mgf.rb

@@ -8,12 +8,12 @@ class TestMascotMgf < Test::Unit::TestCase
   def test_canary
     assert true, "The canary does not sing"
   end
-  
+
   def test_open_file
     mgf = Mascot::MGF.open(@mgf_file)
     assert_not_nil mgf
   end
-  
+
   def test_get_first_and_second_query_string
     mgf = Mascot::MGF.open(@mgf_file)
     assert_not_nil mgf
@@ -53,7 +53,7 @@ class TestMascotMgf < Test::Unit::TestCase
     assert_equal(tenth_query_pepmass[0], tenth_query.pepmass[0])
     assert_equal(tenth_query_pepmass[1], tenth_query.pepmass[1])
   end
-  
+
   def test_query_count
     mgf = Mascot::MGF.open(@mgf_file)
     assert_equal(13, mgf.query_count)
@@ -79,4 +79,11 @@ class TestMascotMgf < Test::Unit::TestCase
     assert_equal(1,mgf.curr_index)
     assert_equal(second_query.title, mgf.query().title)
   end
+  # This test is too prone to attribute re-ordering. Taking out for now
+  # def test_query_to_s
+  #   expected_first_query =File.read("test/fixtures/first_query.mgf")
+  #   mgf = Mascot::MGF.open("test/fixtures/first_query.mgf")
+  #   actual_first_query = mgf.query(0)
+  #   assert_equal(expected_first_query, actual_first_query.to_s)
+  # end
 end

metadata

@@ -1,28 +1,34 @@
---- !ruby/object:Gem::Specification 
+--- !ruby/object:Gem::Specification
 name: mascot-mgf
-version: !ruby/object:Gem::Version 
+version: !ruby/object:Gem::Version
+  version: 0.2.2
   prerelease: 
-  version: 0.2.1
 platform: ruby
-authors: 
+authors:
 - Angel Pizarro
 autorequire: 
 bindir: bin
 cert_chain: []
-
-date: 2011-05-13 00:00:00 Z
-dependencies: []
-
+date: 2012-02-16 00:00:00.000000000 Z
+dependencies:
+- !ruby/object:Gem::Dependency
+  name: rake
+  requirement: &70321602593720 !ruby/object:Gem::Requirement
+    none: false
+    requirements:
+    - - ! '>='
+      - !ruby/object:Gem::Version
+        version: '0'
+  type: :development
+  prerelease: false
+  version_requirements: *70321602593720
 description: A parser for Mascot Generic Format (MGF) files
-email: 
+email:
 - delagoya@gmail.com
 executables: []
-
 extensions: []
-
 extra_rdoc_files: []
-
-files: 
+files:
 - .gitignore
 - Gemfile
 - README.rdoc
@@ -39,36 +45,38 @@ files:
 - test/test_mascot-mgf.rb
 homepage: https://github.com/delagoya/mascot-mgf
 licenses: []
-
 post_install_message: 
 rdoc_options: []
-
-require_paths: 
+require_paths:
 - lib
-required_ruby_version: !ruby/object:Gem::Requirement 
+required_ruby_version: !ruby/object:Gem::Requirement
   none: false
-  requirements: 
-  - - ">="
-    - !ruby/object:Gem::Version 
-      version: "0"
-required_rubygems_version: !ruby/object:Gem::Requirement 
+  requirements:
+  - - ! '>='
+    - !ruby/object:Gem::Version
+      version: '0'
+      segments:
+      - 0
+      hash: -3179264156540033479
+required_rubygems_version: !ruby/object:Gem::Requirement
   none: false
-  requirements: 
-  - - ">="
-    - !ruby/object:Gem::Version 
-      version: "0"
+  requirements:
+  - - ! '>='
+    - !ruby/object:Gem::Version
+      version: '0'
+      segments:
+      - 0
+      hash: -3179264156540033479
 requirements: []
-
 rubyforge_project: 
-rubygems_version: 1.7.2
+rubygems_version: 1.8.11
 signing_key: 
 specification_version: 3
 summary: A parser for Mascot Generic Format (MGF) files
-test_files: 
+test_files:
 - test/fixtures/example.mgf
 - test/fixtures/first_query.mgf
 - test/fixtures/second_query.mgf
 - test/fixtures/tenth_query.mgf
 - test/fixtures/titles.yml
 - test/test_mascot-mgf.rb
-has_rdoc: