mascot-mgf 0.2.0 → 0.2.1

data/lib/mascot/mgf/query.rb

@@ -27,7 +27,7 @@ module Mascot
           tmp += "#{k.to_s.upcase}=#{v}\n"
         end
         tmp += @ions.collect { |i| i.join(" ")}.join("\n")
-        tmp += "\nqEND IONS\n"
+        tmp += "\nEND IONS\n"
         return tmp
       end
 

data/lib/mascot/mgf/version.rb

@@ -1,5 +1,5 @@
 module Mascot
   class MGF
-    VERSION = "0.2.0"
+    VERSION = "0.2.1"
   end
 end

data/lib/mascot/mgf.rb

@@ -13,9 +13,9 @@ module Mascot
 
     def rewind
       super
-      @curr_index = 0      
+      @curr_index = 0
     end
-    
+
     def readquery(n=nil)
       if n
         @curr_index = n
@@ -25,15 +25,15 @@ module Mascot
       @curr_index += 1
       self.read(bytelength)
     end
-    
+
     def each_query
       while !self.eof?
         yield self.query() if block_given?
       end
     end
 
-    # alias_method :io_each, :each 
-    # def each 
+    # alias_method :io_each, :each
+    # def each
     #   while !self.eof?
     #     yield self.readquery if block_given?
     #   end
@@ -42,7 +42,7 @@ module Mascot
     def query(n=nil)
       Mascot::MGF::Query.new(self.readquery(n))
     end
-    
+
     # reports how many queries are in this MGF file
     def query_count()
       return @idx.length
@@ -73,7 +73,7 @@ module Mascot
         when "END"
           @idx[-1][1] = self.pos
         end
-      end   
+      end
       if @cache_index
         idx_file = File.open(@full_path + ".idx",'wb')
         idx_file.print(::Marshal.dump(@idx))

metadata

@@ -1,12 +1,8 @@
 --- !ruby/object:Gem::Specification 
 name: mascot-mgf
 version: !ruby/object:Gem::Version 
-  prerelease: false
-  segments: 
-  - 0
-  - 2
-  - 0
-  version: 0.2.0
+  prerelease: 
+  version: 0.2.1
 platform: ruby
 authors: 
 - Angel Pizarro
@@ -14,8 +10,7 @@ autorequire:
 bindir: bin
 cert_chain: []
 
-date: 2011-01-10 00:00:00 -05:00
-default_executable: 
+date: 2011-05-13 00:00:00 Z
 dependencies: []
 
 description: A parser for Mascot Generic Format (MGF) files
@@ -42,7 +37,6 @@ files:
 - test/fixtures/tenth_query.mgf
 - test/fixtures/titles.yml
 - test/test_mascot-mgf.rb
-has_rdoc: true
 homepage: https://github.com/delagoya/mascot-mgf
 licenses: []
 
@@ -56,21 +50,17 @@ required_ruby_version: !ruby/object:Gem::Requirement
   requirements: 
   - - ">="
     - !ruby/object:Gem::Version 
-      segments: 
-      - 0
       version: "0"
 required_rubygems_version: !ruby/object:Gem::Requirement 
   none: false
   requirements: 
   - - ">="
     - !ruby/object:Gem::Version 
-      segments: 
-      - 0
       version: "0"
 requirements: []
 
 rubyforge_project: 
-rubygems_version: 1.3.7
+rubygems_version: 1.7.2
 signing_key: 
 specification_version: 3
 summary: A parser for Mascot Generic Format (MGF) files
@@ -81,3 +71,4 @@ test_files:
 - test/fixtures/tenth_query.mgf
 - test/fixtures/titles.yml
 - test/test_mascot-mgf.rb
+has_rdoc: