libsvmffi 0.0.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- data/LICENSE +19 -0
- data/README +37 -0
- data/lib/libsvmffi/model.rb +156 -0
- data/lib/libsvmffi/node.rb +6 -0
- data/lib/libsvmffi/parameters.rb +19 -0
- data/lib/libsvmffi/problem.rb +7 -0
- data/lib/libsvmffi.rb +38 -0
- metadata +61 -0
data/LICENSE
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Copyright (C) 2011 by Robert Berry
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Permission is hereby granted, free of charge, to any person obtaining a copy
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of this software and associated documentation files (the "Software"), to deal
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in the Software without restriction, including without limitation the rights
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to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
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copies of the Software, and to permit persons to whom the Software is
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furnished to do so, subject to the following conditions:
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The above copyright notice and this permission notice shall be included in
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all copies or substantial portions of the Software.
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THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
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IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
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FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
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AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
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LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
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OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
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THE SOFTWARE.
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data/README
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== Introduction
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This is alpha grade software.
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Under development. But simple use cases may be worth checking out.
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http://www.csie.ntu.edu.tw/~cjlin/libsvm/
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libsvm version 310
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== Installation
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1. download (see url above)
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2. make lib
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3. place .so in load path
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gem install libsvmffi
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== Usage
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#> require 'libsvmffi'
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#> m = Libsvmffi::Model.new
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#> m.add :good, {:height => 1, :width => 1, :length => 1}
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#> m.add :bad, {:height => 10, :width => 3, :length => 6}
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#> m.train
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#> m.classify({:height => 1, :width => 1.1, :length => 1})
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#=> :good
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== Source Code
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https://github.com/bdigital/libsvmffi
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Assistance developing is welcome.
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module Libsvmffi
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#
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#
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#
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class Model
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attr_accessor :parameters, :problem, :svm_model
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attr_accessor :examples
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attr_accessor :labels, :features
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attr_accessor :elements, :x_space
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attr_accessor :nodes, :x
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def initialize(options = {})
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@parameters = Parameters.new
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# TODO merge defaults options hash.
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@parameters[:svm_type] = C_SVC;
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@parameters[:kernel_type] = RBF;
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@parameters[:degree] = 3;
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@parameters[:gamma] = 0; # 1/num_features
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@parameters[:coef0] = 0;
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@parameters[:nu] = 0.5;
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@parameters[:cache_size] = 100;
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@parameters[:C] = 1;
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@parameters[:eps] = 0.001;
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@parameters[:p] = 0.1;
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@parameters[:shrinking] = 1;
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@parameters[:probability] = 0;
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@parameters[:nr_weight] = 0;
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@parameters[:weight_label] = nil;
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@parameters[:weight] = nil;
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@elements = 0
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@examples, @labels, @features = [], [], []
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@nodes = []
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end
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#
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# Adds an example which will be used upon trainining
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#
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def add(label, features)
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@labels.push label unless @labels.include? label
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indexed_features = {}
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features.each do |k, v|
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@features.push k unless @features.include? k
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indexed_features[@features.index(k)] = v
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end
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@examples.push({@labels.index(label) => indexed_features})
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@elements += features.length + 1 # also -1 terminator, see libsvm readme.
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end
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#
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# Build libsvm model
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#
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def train
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@problem = Problem.new
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@problem[:l] = @examples.length
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@problem[:y] = FFI::MemoryPointer.new(:double, @problem[:l])
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@x = FFI::MemoryPointer.new(:pointer, @problem[:l])
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@problem[:x] = x.address #FFI::MemoryPointer.new(:pointer, @problem[:l])
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@x_space = FFI::MemoryPointer.new(Node, @elements)
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y = @examples.map {|e| e.keys.first}
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@problem[:y].put_array_of_double 0, y
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i = 0
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space_index = 0
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examples.each do |ex| #TODO clean up this hash structure
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ex.each do |e|
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@x[i].write_pointer @x_space[space_index]
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i += 1
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features = e.last.merge({-1 => 0}) #terminator
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features.each do |k, v|
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n = Node.new @x_space[space_index]
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n[:index] = k
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n[:value] = v
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space_index += 1
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@nodes.push n
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end
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end
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end
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@parameters[:gamma] = 1 / @features.length.to_f
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@svm_model = Libsvmffi.svm_train @problem.pointer, @parameters.pointer
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end
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#
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#
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#
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def classify(features)
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nodes = fton(features)
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label_index = Libsvmffi.svm_predict @svm_model, nodes
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@labels[label_index.to_i]
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end
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#
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# Save to file
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#
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def save(filename = "model.out")
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Libsvmffi.svm_save_model FFI::MemoryPointer.from_string(filename), @svm_model
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end
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#
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# Add training examples from a libsvm training format file
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#
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def add_from_file(filename)
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f = File.open filename, 'r'
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f.lines.each do |l|
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tokens = l.split " "
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label = tokens.shift
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features = {}
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tokens.each do |t|
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index, value = t.split(":")
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features[index.to_i] = value.to_f
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end
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self.add label, features
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end
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end
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#
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# Features to array of node struct (currently factored just for debugging, only used in predict)
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#
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def fton(features)
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indexed_features = {}
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features.each do |k, v|
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indexed_features[@features.index(k)] = v unless !@features.include? k
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end
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nodes = FFI::MemoryPointer.new(Node, indexed_features.length + 1)
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indexed_features = indexed_features.merge({-1 => 0}) #terminator
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i = 0
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indexed_features.each do |k, v|
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n = Node.new nodes[i]
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n[:index] = k
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n[:value] = v
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i += 1
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end
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return nodes
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end
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end
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end
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module Libsvmffi
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class Parameters < FFI::Struct
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layout :svm_type, :int,
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:kernel_type, :int,
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:degree, :int, # for poly
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:gamma, :double, # for poly/rbf/sigmoid
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:coef0, :double, # for poly/sigmoid
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:cache_size, :double , # in MB
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:eps, :double, # stopping criteria
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:C, :double, # for C_SVC, EPSILON_SVR and NU_SVR
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:nr_weight, :int, # for C_SVC
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:weight_label, :pointer, # int for C_SVC
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:weight, :pointer, # double for C_SVC
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:nu, :double, # for NU_SVC, ONE_CLASS, and NU_SVR
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:p, :double, # for EPSILON_SVR
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:shrinking, :int, # use the shrinking heuristics
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:probability, :int # do probability estimates
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end
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end
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data/lib/libsvmffi.rb
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require 'ffi'
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require 'libsvmffi/problem'
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require 'libsvmffi/parameters'
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require 'libsvmffi/node'
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require 'libsvmffi/model'
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module Libsvmffi
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extend FFI::Library
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ffi_lib 'svm' # REVIEW
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C_SVC, NU_SVC, ONE_CLASS, EPSILON_SVR, NU_SVR = 0, 1, 2, 3, 4 # SVM Type
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LINEAR, POLY, RBF, SIGMOID, PRECOMPUTED = 0, 1, 2, 3, 4 # Kernel Type
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attach_function 'svm_train', [:pointer, :pointer], :pointer
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attach_function 'svm_cross_validation', [:pointer, :pointer, :int, :pointer], :void
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attach_function 'svm_save_model', [:pointer, :pointer], :int
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attach_function 'svm_load_model', [:pointer], :pointer
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attach_function 'svm_get_svm_type', [:pointer], :int
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attach_function 'svm_get_nr_class', [:pointer], :int
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attach_function 'svm_get_labels', [:pointer, :pointer], :void
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attach_function 'svm_get_svr_probability', [:pointer], :double
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attach_function 'svm_predict', [:pointer, :pointer], :double
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attach_function 'svm_predict_values', [:pointer, :pointer, :pointer], :void
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attach_function 'svm_predict_probability', [:pointer, :pointer, :pointer], :double
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attach_function 'svm_free_and_destroy_model', [:pointer], :void
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attach_function 'svm_destroy_param', [:pointer], :void
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attach_function 'svm_check_parameter', [:pointer, :pointer], :pointer
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attach_function 'svm_check_probability_model', [:pointer], :int
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end
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metadata
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--- !ruby/object:Gem::Specification
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name: libsvmffi
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version: !ruby/object:Gem::Version
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prerelease:
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version: 0.0.1
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platform: ruby
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authors:
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- Robert Berry
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autorequire:
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bindir: bin
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cert_chain: []
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date: 2011-05-01 00:00:00 Z
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dependencies: []
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description: SVM operations.
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email: berrydigital@gmail.com
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executables: []
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extensions: []
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extra_rdoc_files: []
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files:
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- lib/libsvmffi.rb
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- lib/libsvmffi/problem.rb
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- lib/libsvmffi/node.rb
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- lib/libsvmffi/parameters.rb
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- lib/libsvmffi/model.rb
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- README
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- LICENSE
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homepage: http://github.com/bdigital/libsvmffi
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licenses: []
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post_install_message:
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rdoc_options: []
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require_paths:
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- lib
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required_ruby_version: !ruby/object:Gem::Requirement
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none: false
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requirements:
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- - ">="
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- !ruby/object:Gem::Version
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version: "0"
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required_rubygems_version: !ruby/object:Gem::Requirement
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none: false
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requirements:
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- - ">="
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- !ruby/object:Gem::Version
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version: "0"
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requirements: []
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rubyforge_project:
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rubygems_version: 1.7.2
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signing_key:
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specification_version: 3
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summary: Libsvm ffi bindings
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test_files: []
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has_rdoc: false
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