libis-rosetta_checker 1.0.0

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data/.gitignore ADDED
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+ /.bundle/
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+ /.yardoc
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+ /_yardoc/
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+ /coverage/
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+ /doc/
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+ /pkg/
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+ /spec/reports/
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+ /tmp/
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+
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+ # rspec failure tracking
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+ .rspec_status
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+
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+ Gemfile.lock
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+ .idea
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+ <?xml version="1.0" encoding="UTF-8"?>
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+ <module type="RUBY_MODULE" version="4">
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+ <component name="ModuleRunConfigurationManager">
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+ <shared />
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+ </component>
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+ <component name="NewModuleRootManager">
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+ <content url="file://$MODULE_DIR$" />
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+ <orderEntry type="jdk" jdkName="RVM: ruby-2.3.5 [rosetta_checker]" jdkType="RUBY_SDK" />
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+ <orderEntry type="sourceFolder" forTests="false" />
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+ <orderEntry type="library" scope="PROVIDED" name="awesome_print (v1.8.0, RVM: ruby-2.3.5 [rosetta_checker]) [gem]" level="application" />
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+ <orderEntry type="library" scope="PROVIDED" name="bundler (v1.16.0, RVM: ruby-2.3.5 [rosetta_checker]) [gem]" level="application" />
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+ <orderEntry type="library" scope="PROVIDED" name="bzip2-ffi (v1.0.0, RVM: ruby-2.3.5 [rosetta_checker]) [gem]" level="application" />
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+ <orderEntry type="library" scope="PROVIDED" name="diff-lcs (v1.3, RVM: ruby-2.3.5 [rosetta_checker]) [gem]" level="application" />
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+ <orderEntry type="library" scope="PROVIDED" name="ffi (v1.9.18, RVM: ruby-2.3.5 [rosetta_checker]) [gem]" level="application" />
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+ <orderEntry type="library" scope="PROVIDED" name="little-plugger (v1.1.4, RVM: ruby-2.3.5 [rosetta_checker]) [gem]" level="application" />
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+ <orderEntry type="library" scope="PROVIDED" name="logging (v2.2.2, RVM: ruby-2.3.5 [rosetta_checker]) [gem]" level="application" />
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+ <orderEntry type="library" scope="PROVIDED" name="multi_json (v1.12.2, RVM: ruby-2.3.5 [rosetta_checker]) [gem]" level="application" />
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+ <orderEntry type="library" scope="PROVIDED" name="rake (v10.5.0, RVM: ruby-2.3.5 [rosetta_checker]) [gem]" level="application" />
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+ <orderEntry type="library" scope="PROVIDED" name="rspec (v3.7.0, RVM: ruby-2.3.5 [rosetta_checker]) [gem]" level="application" />
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+ <orderEntry type="library" scope="PROVIDED" name="rspec-core (v3.7.0, RVM: ruby-2.3.5 [rosetta_checker]) [gem]" level="application" />
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+ <orderEntry type="library" scope="PROVIDED" name="rspec-expectations (v3.7.0, RVM: ruby-2.3.5 [rosetta_checker]) [gem]" level="application" />
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+ <orderEntry type="library" scope="PROVIDED" name="rspec-mocks (v3.7.0, RVM: ruby-2.3.5 [rosetta_checker]) [gem]" level="application" />
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+ <orderEntry type="library" scope="PROVIDED" name="rspec-support (v3.7.0, RVM: ruby-2.3.5 [rosetta_checker]) [gem]" level="application" />
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+ <orderEntry type="library" scope="PROVIDED" name="ruby-oci8 (v2.2.5, RVM: ruby-2.3.5 [rosetta_checker]) [gem]" level="application" />
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+ <orderEntry type="library" scope="PROVIDED" name="ruby-progressbar (v1.9.0, RVM: ruby-2.3.5 [rosetta_checker]) [gem]" level="application" />
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+ <orderEntry type="library" scope="PROVIDED" name="rubyzip (v1.2.1, RVM: ruby-2.3.5 [rosetta_checker]) [gem]" level="application" />
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+ </component>
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+ </module>
data/.idea/misc.xml ADDED
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+ <?xml version="1.0" encoding="UTF-8"?>
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+ <project version="4">
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+ <component name="ProjectRootManager" version="2" project-jdk-name="RVM: ruby-2.4.0" project-jdk-type="RUBY_SDK" />
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+ </project>
data/.idea/modules.xml ADDED
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+ <?xml version="1.0" encoding="UTF-8"?>
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+ <project version="4">
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+ <component name="ProjectModuleManager">
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+ <modules>
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+ <module fileurl="file://$PROJECT_DIR$/.idea/libis-rosetta_checker.iml" filepath="$PROJECT_DIR$/.idea/libis-rosetta_checker.iml" />
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+ </modules>
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+ </component>
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+ </project>
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+ <?xml version="1.0" encoding="UTF-8"?>
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+ <project version="4">
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+ <component name="ChangeListManager">
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+ <list default="true" id="417fb874-36ab-40d6-8b52-72e03d46d278" name="Default" comment="">
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+ <change beforePath="$PROJECT_DIR$/.idea/libis-rosetta_checker.iml" afterPath="" />
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+ <change beforePath="$PROJECT_DIR$/.idea/misc.xml" afterPath="" />
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+ <change beforePath="$PROJECT_DIR$/.idea/modules.xml" afterPath="" />
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+ <change beforePath="$PROJECT_DIR$/.idea/workspace.xml" afterPath="" />
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+ </list>
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+ <option name="EXCLUDED_CONVERTED_TO_IGNORED" value="true" />
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+ <option name="TRACKING_ENABLED" value="true" />
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+ <option name="SHOW_DIALOG" value="false" />
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+ <option name="HIGHLIGHT_CONFLICTS" value="true" />
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+ <option name="HIGHLIGHT_NON_ACTIVE_CHANGELIST" value="false" />
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+ <option name="LAST_RESOLUTION" value="IGNORE" />
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+ </component>
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+ <component name="CoverageDataManager">
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+ <SUITE FILE_PATH="coverage/rosetta_checker@rosetta_checker.coverage" NAME="rosetta_checker Coverage Results" MODIFIED="1513356510803" SOURCE_PROVIDER="com.intellij.coverage.DefaultCoverageFileProvider" RUNNER="rcov" COVERAGE_BY_TEST_ENABLED="true" COVERAGE_TRACING_ENABLED="false" WORKING_DIRECTORY="$PROJECT_DIR$" MODULE_NAME="libis-rosetta_checker" />
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+ <SUITE FILE_PATH="coverage/rosetta_checker@files2ingest.coverage" NAME="files2ingest Coverage Results" MODIFIED="1513684539596" SOURCE_PROVIDER="com.intellij.coverage.DefaultCoverageFileProvider" RUNNER="rcov" COVERAGE_BY_TEST_ENABLED="true" COVERAGE_TRACING_ENABLED="false" WORKING_DIRECTORY="$PROJECT_DIR$" MODULE_NAME="libis-rosetta_checker" />
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+ </component>
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+ <component name="FileEditorManager">
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+ <leaf SIDE_TABS_SIZE_LIMIT_KEY="300">
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+ <file leaf-file-name="files_to_ingest_cleanup.rb" pinned="false" current-in-tab="false">
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+ <entry file="file://$PROJECT_DIR$/lib/libis/rosetta_checker/files_to_ingest_cleanup.rb">
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+ <provider selected="true" editor-type-id="text-editor">
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+ <folding />
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+ </state>
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+ </provider>
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+ </entry>
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+ </file>
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+ <file leaf-file-name="logging.rb" pinned="false" current-in-tab="false">
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+ <entry file="file://$USER_HOME$/.rvm/gems/ruby-2.3.5@rosetta_checker/gems/logging-2.2.2/lib/logging.rb">
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+ <provider selected="true" editor-type-id="text-editor">
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+ <state relative-caret-position="278">
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+ <caret line="23" column="8" lean-forward="false" selection-start-line="23" selection-start-column="8" selection-end-line="23" selection-end-column="8" />
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+ <folding />
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+ </state>
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+ </provider>
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+ </entry>
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+ </file>
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+ <file leaf-file-name="pattern.rb" pinned="false" current-in-tab="false">
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+ <entry file="file://$USER_HOME$/.rvm/gems/ruby-2.3.5@rosetta_checker/gems/logging-2.2.2/lib/logging/layouts/pattern.rb">
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+ <provider selected="true" editor-type-id="text-editor">
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+ <state relative-caret-position="224">
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+ <caret line="227" column="63" lean-forward="false" selection-start-line="227" selection-start-column="10" selection-end-line="227" selection-end-column="63" />
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+ <folding />
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+ </state>
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+ </provider>
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+ </entry>
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+ </file>
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+ <file leaf-file-name="sub_command.rb" pinned="false" current-in-tab="false">
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+ <entry file="file://$PROJECT_DIR$/lib/libis/rosetta_checker/sub_command.rb">
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+ <provider selected="true" editor-type-id="text-editor">
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+ <state relative-caret-position="160">
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+ <caret line="23" column="8" lean-forward="false" selection-start-line="23" selection-start-column="8" selection-end-line="23" selection-end-column="8" />
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+ <folding />
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+ </state>
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+ </provider>
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+ </entry>
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+ </file>
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+ <file leaf-file-name="files_to_ingest_cleanup.rb" pinned="false" current-in-tab="false">
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+ <entry file="file://$PROJECT_DIR$/lib/libis/rosetta_checker/options/files_to_ingest_cleanup.rb">
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+ <provider selected="true" editor-type-id="text-editor">
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+ <state relative-caret-position="972">
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+ <caret line="54" column="74" lean-forward="false" selection-start-line="54" selection-start-column="74" selection-end-line="54" selection-end-column="74" />
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+ <folding />
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+ </state>
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+ </provider>
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+ </entry>
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+ </file>
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+ <file leaf-file-name="spec.log" pinned="false" current-in-tab="false">
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+ <entry file="file://$PROJECT_DIR$/spec.log">
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+ <provider selected="true" editor-type-id="LogFileEditorProvider">
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+ <state relative-caret-position="270">
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+ <caret line="15" column="60" lean-forward="false" selection-start-line="8" selection-start-column="26" selection-end-line="16" selection-end-column="0" />
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+ </state>
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+ </provider>
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+ </entry>
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+ </file>
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+ <file leaf-file-name="report.csv" pinned="false" current-in-tab="false">
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+ <entry file="file://$PROJECT_DIR$/report.csv">
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+ <provider selected="true" editor-type-id="text-editor">
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+ <state relative-caret-position="0">
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+ <caret line="0" column="0" lean-forward="false" selection-start-line="0" selection-start-column="0" selection-end-line="0" selection-end-column="0" />
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+ <folding />
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+ </state>
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+ </provider>
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+ </entry>
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+ </file>
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+ <file leaf-file-name="rosetta_checker.rb" pinned="false" current-in-tab="false">
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+ <entry file="file://$PROJECT_DIR$/lib/libis/rosetta_checker.rb">
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+ <provider selected="true" editor-type-id="text-editor">
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+ <state relative-caret-position="522">
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+ <caret line="29" column="15" lean-forward="false" selection-start-line="29" selection-start-column="15" selection-end-line="29" selection-end-column="15" />
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+ <folding />
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+ </state>
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+ </provider>
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+ </entry>
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+ </file>
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+ <file leaf-file-name="alamire.log" pinned="false" current-in-tab="false">
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+ <entry file="file://$PROJECT_DIR$/alamire.log">
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+ <provider selected="true" editor-type-id="LogFileEditorProvider">
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+ <state relative-caret-position="213">
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+ <caret line="37" column="29" lean-forward="false" selection-start-line="37" selection-start-column="29" selection-end-line="37" selection-end-column="29" />
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+ </state>
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+ </provider>
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+ </entry>
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+ </file>
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+ <file leaf-file-name="version.rb" pinned="false" current-in-tab="true">
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+ <entry file="file://$PROJECT_DIR$/lib/libis/rosetta_checker/version.rb">
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+ <provider selected="true" editor-type-id="text-editor">
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+ <state relative-caret-position="90">
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+ <caret line="5" column="0" lean-forward="false" selection-start-line="5" selection-start-column="0" selection-end-line="5" selection-end-column="0" />
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+ <folding />
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+ </state>
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+ </provider>
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+ </entry>
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+ </file>
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+ </leaf>
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+ </component>
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+ <component name="FileTemplateManagerImpl">
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+ <option name="RECENT_TEMPLATES">
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+ <list>
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+ <option value="Ruby Class Template" />
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+ </list>
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+ </option>
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+ </component>
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+ <component name="FindInProjectRecents">
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+ <findStrings>
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+ <find>raise</find>
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+ <find>finis</find>
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+ <find>does</find>
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+ <find>LEVELS</find>
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+ </findStrings>
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+ </component>
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+ <component name="Git.Settings">
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+ <option name="RECENT_GIT_ROOT_PATH" value="$PROJECT_DIR$" />
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+ </component>
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+ <component name="IdeDocumentHistory">
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+ <option name="CHANGED_PATHS">
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+ <list>
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+ <option value="$PROJECT_DIR$/LICENSE.txt" />
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+ <option value="$PROJECT_DIR$/bin/rosetta_checker" />
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+ <option value="$PROJECT_DIR$/lib/libis/rosetta_checker/f2_i_options.rb" />
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+ <option value="$PROJECT_DIR$/exe/libis-rosetta_checker" />
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+ <option value="$PROJECT_DIR$/.gitignore" />
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+ <option value="$PROJECT_DIR$/libis-rosetta_checker.gemspec" />
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+ <option value="$PROJECT_DIR$/lib/libis/rosetta_checker/sub_command.rb" />
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+ <option value="$PROJECT_DIR$/lib/libis/rosetta_checker/version.rb" />
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+ <option value="$PROJECT_DIR$/alamire.list" />
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+ <option value="$PROJECT_DIR$/lib/libis/rosetta_checker/options/files_to_ingest_cleanup.rb" />
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+ <option value="$PROJECT_DIR$/lib/libis/rosetta_checker/files_to_ingest_cleanup.rb" />
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+ <option value="$PROJECT_DIR$/lib/libis/rosetta_checker.rb" />
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+ </list>
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+ </option>
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+ </component>
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+ <component name="JsBuildToolGruntFileManager" detection-done="true" sorting="DEFINITION_ORDER" />
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+ <component name="JsBuildToolPackageJson" detection-done="true" sorting="DEFINITION_ORDER" />
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+ <component name="JsGulpfileManager">
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+ <detection-done>true</detection-done>
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+ <sorting>DEFINITION_ORDER</sorting>
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+ </component>
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+ <component name="ProjectFrameBounds" extendedState="6">
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+ <option name="x" value="49" />
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+ <option name="width" value="1631" />
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+ <option name="height" value="1024" />
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+ </component>
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+ <component name="ProjectLevelVcsManager" settingsEditedManually="true" />
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+ <component name="ProjectView">
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+ <navigator currentView="ProjectPane" proportions="" version="1">
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+ <flattenPackages />
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+ <showMembers />
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+ <showModules />
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+ <showLibraryContents />
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+ <hideEmptyPackages />
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+ <abbreviatePackageNames />
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+ <autoscrollToSource />
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+ <autoscrollFromSource />
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+ <sortByType />
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+ <manualOrder />
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+ <foldersAlwaysOnTop value="true" />
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+ </navigator>
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+ <panes>
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+ <pane id="ProjectPane">
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+ <subPane>
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+ <expand>
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+ <path>
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+ <item name="rosetta_checker" type="b2602c69:ProjectViewProjectNode" />
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+ <item name="rosetta_checker" type="462c0819:PsiDirectoryNode" />
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+ </path>
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+ <path>
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+ <item name="rosetta_checker" type="b2602c69:ProjectViewProjectNode" />
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+ <item name="rosetta_checker" type="462c0819:PsiDirectoryNode" />
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+ <item name="bin" type="462c0819:PsiDirectoryNode" />
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+ </path>
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+ <path>
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+ <item name="rosetta_checker" type="b2602c69:ProjectViewProjectNode" />
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+ <item name="rosetta_checker" type="462c0819:PsiDirectoryNode" />
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+ <item name="exe" type="462c0819:PsiDirectoryNode" />
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+ </path>
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+ <path>
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+ <item name="rosetta_checker" type="b2602c69:ProjectViewProjectNode" />
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+ <item name="rosetta_checker" type="462c0819:PsiDirectoryNode" />
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+ <item name="lib" type="462c0819:PsiDirectoryNode" />
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+ </path>
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+ <path>
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+ <item name="rosetta_checker" type="b2602c69:ProjectViewProjectNode" />
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+ <item name="rosetta_checker" type="462c0819:PsiDirectoryNode" />
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+ <item name="lib" type="462c0819:PsiDirectoryNode" />
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+ <item name="libis" type="462c0819:PsiDirectoryNode" />
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+ </path>
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+ <path>
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+ <item name="rosetta_checker" type="b2602c69:ProjectViewProjectNode" />
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+ <item name="rosetta_checker" type="462c0819:PsiDirectoryNode" />
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+ <item name="lib" type="462c0819:PsiDirectoryNode" />
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+ <item name="libis" type="462c0819:PsiDirectoryNode" />
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+ <item name="rosetta_checker" type="462c0819:PsiDirectoryNode" />
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+ </path>
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+ <path>
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+ <item name="rosetta_checker" type="b2602c69:ProjectViewProjectNode" />
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+ <item name="rosetta_checker" type="462c0819:PsiDirectoryNode" />
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+ <item name="lib" type="462c0819:PsiDirectoryNode" />
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+ <item name="libis" type="462c0819:PsiDirectoryNode" />
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+ <item name="rosetta_checker" type="462c0819:PsiDirectoryNode" />
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+ <item name="options" type="462c0819:PsiDirectoryNode" />
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+ </path>
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+ <path>
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+ <item name="rosetta_checker" type="b2602c69:ProjectViewProjectNode" />
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+ <item name="rosetta_checker" type="462c0819:PsiDirectoryNode" />
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+ <item name="spec" type="462c0819:PsiDirectoryNode" />
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+ </path>
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+ <path>
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+ <item name="rosetta_checker" type="b2602c69:ProjectViewProjectNode" />
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+ <item name="rosetta_checker" type="462c0819:PsiDirectoryNode" />
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+ <item name="spec" type="462c0819:PsiDirectoryNode" />
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+ <item name="libis" type="462c0819:PsiDirectoryNode" />
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+ </path>
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+ </expand>
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+ <select />
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+ </subPane>
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+ </pane>
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+ <pane id="Scratches" />
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+ <pane id="Scope" />
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+ </panes>
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+ </component>
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+ <component name="PropertiesComponent">
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+ <property name="WebServerToolWindowFactoryState" value="false" />
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+ <property name="last_opened_file_path" value="$PROJECT_DIR$" />
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+ <property name="settings.editor.selected.configurable" value="org.jetbrains.plugins.ruby.settings.RubyActiveModuleSdkConfigurable" />
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+ <property name="add_unversioned_files" value="true" />
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+ </component>
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+ <component name="RecentsManager">
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+ <key name="CopyFile.RECENT_KEYS">
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+ <recent name="$PROJECT_DIR$/bin" />
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+ </key>
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+ <key name="MoveFile.RECENT_KEYS">
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+ <recent name="$PROJECT_DIR$/lib/libis/rosetta_checker/options" />
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+ </key>
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+ </component>
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+ <component name="RunDashboard">
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+ <option name="ruleStates">
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+ <list>
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+ <RuleState>
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+ <option name="name" value="ConfigurationTypeDashboardGroupingRule" />
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+ </RuleState>
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+ <RuleState>
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+ <option name="name" value="StatusDashboardGroupingRule" />
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+ </RuleState>
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+ </list>
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+ </option>
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+ </component>
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+ <component name="RunManager">
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+ <configuration name="files2ingest" type="RubyRunConfigurationType" factoryName="Ruby">
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+ <module name="libis-rosetta_checker" />
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+ <RUBY_RUN_CONFIG NAME="RUBY_ARGS" VALUE="-e $stdout.sync=true;$stderr.sync=true;load($0=ARGV.shift)" />
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+ <RUBY_RUN_CONFIG NAME="WORK DIR" VALUE="$MODULE_DIR$" />
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+ <RUBY_RUN_CONFIG NAME="SHOULD_USE_SDK" VALUE="false" />
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+ <RUBY_RUN_CONFIG NAME="ALTERN_SDK_NAME" VALUE="" />
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+ <RUBY_RUN_CONFIG NAME="myPassParentEnvs" VALUE="true" />
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+ <envs>
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+ <env name="LD_LIBRARY_PATH" value="/opt/oracle/instantclient_12_1" />
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+ </envs>
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+ <EXTENSION ID="BundlerRunConfigurationExtension" bundleExecEnabled="false" />
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+ <EXTENSION ID="JRubyRunConfigurationExtension" NailgunExecEnabled="false" />
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+ <EXTENSION ID="RubyCoverageRunConfigurationExtension" enabled="false" sample_coverage="true" track_test_folders="true" runner="rcov">
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+ <COVERAGE_PATTERN ENABLED="true">
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+ <PATTERN REGEXPS="/.rvm/" INCLUDED="false" />
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+ </COVERAGE_PATTERN>
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+ </EXTENSION>
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+ <RUBY_RUN_CONFIG NAME="SCRIPT_PATH" VALUE="$MODULE_DIR$/exe/rosetta_checker" />
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+ <RUBY_RUN_CONFIG NAME="SCRIPT_ARGS" VALUE="files2ingest --db-url localhost:1551/ROSETTAP.kuleuven.be -R -o f2l.csv /nas/vol01/kadoc/20080926/" />
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+ </configuration>
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+ <component name="ShelveChangesManager" show_recycled="false">
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+ <option name="remove_strategy" value="false" />
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+ </component>
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+ <component name="SpringUtil" SPRING_PRE_LOADER_OPTION="true" />
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+ <component name="SvnConfiguration">
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+ <configuration />
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+ <component name="TaskManager">
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