lederhosen 2.0.3 → 2.0.4
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- data/lederhosen.gemspec +1 -1
- data/lib/lederhosen/tasks/otu_filter.rb +4 -3
- data/lib/lederhosen/version.rb +1 -1
- metadata +2 -2
data/lederhosen.gemspec
CHANGED
@@ -25,7 +25,7 @@ module Lederhosen
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25
25
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# slurp up CSV file
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26
26
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File.open input do |handle|
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27
27
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header = handle.gets.strip.split(',')
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28
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-
cluster_ids = header[
|
28
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+
cluster_ids = header[0..-1]
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29
29
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handle.each do |line|
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30
30
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line = line.strip.split(',')
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31
31
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sample_id = line[0].to_sym
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@@ -53,13 +53,14 @@ module Lederhosen
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53
53
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samples = filtered.values.map(&:keys).flatten.uniq
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54
54
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clusters = filtered.keys
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55
55
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out.puts "-,#{clusters.join(',')},noise"
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56
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+
|
56
57
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samples.each do |sample|
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57
58
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out.print "#{sample}"
|
58
59
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clusters.each do |cluster|
|
59
60
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out.print ",#{filtered[cluster][sample]}"
|
60
61
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end
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61
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-
noise_sum = noise.map { |n| cluster_sample_count[n][sample]}.inject(:+)
|
62
|
-
out.print ",#{noise_sum}"
|
62
|
+
noise_sum = noise.map { |n| cluster_sample_count[n][sample] }.inject(:+)
|
63
|
+
out.print ",#{noise_sum || 0}"
|
63
64
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out.print "\n"
|
64
65
|
end
|
65
66
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out.close
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data/lib/lederhosen/version.rb
CHANGED
metadata
CHANGED
@@ -1,7 +1,7 @@
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1
1
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--- !ruby/object:Gem::Specification
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2
2
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name: lederhosen
|
3
3
|
version: !ruby/object:Gem::Version
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4
|
-
version: 2.0.
|
4
|
+
version: 2.0.4
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5
5
|
prerelease:
|
6
6
|
platform: ruby
|
7
7
|
authors:
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@@ -148,7 +148,7 @@ required_ruby_version: !ruby/object:Gem::Requirement
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|
148
148
|
version: '0'
|
149
149
|
segments:
|
150
150
|
- 0
|
151
|
-
hash:
|
151
|
+
hash: -4055931160934268209
|
152
152
|
required_rubygems_version: !ruby/object:Gem::Requirement
|
153
153
|
none: false
|
154
154
|
requirements:
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