lederhosen 0.3.6 → 0.3.7

data/lederhosen.gemspec

@@ -5,7 +5,7 @@
 
 Gem::Specification.new do |s|
   s.name = "lederhosen"
-  s.version = "0.3.6"
+  s.version = "0.3.7"
 
   s.required_rubygems_version = Gem::Requirement.new(">= 0") if s.respond_to? :required_rubygems_version=
   s.authors = ["Austin G. Davis-Richardson"]

data/lib/lederhosen/tasks/otu_filter.rb

@@ -37,6 +37,20 @@ module Lederhosen
       # filter sample_cluster_count
       filtered = cluster_sample_count.reject { |k, v| v.reject { |k, v| v < reads }.size < min_samples }
 
+      # save the table
+      out = File.open(output, 'w')
+      samples = filtered.values.map(&:keys).flatten.uniq
+      clusters = filtered.keys
+      out.puts "-,#{clusters.join(',')}"
+      samples.each do |sample|
+        out.print "#{sample}"
+        clusters.each do |cluster|
+          out.print ",#{filtered[cluster][sample]}"
+        end
+        out.print "\n"
+      end
+      out.close
+
       ohai "kept #{filtered.keys.size} clusters (#{filtered.keys.size/cluster_sample_count.size.to_f})."
       kept_reads = filtered.values.map { |x| x.values.inject(:+) }.inject(:+)
       total_reads = cluster_sample_count.values.map { |x| x.values.inject(:+) }.inject(:+)

data/lib/lederhosen/version.rb

@@ -2,7 +2,7 @@ module Lederhosen
   module Version
     MAJOR = 0
     MINOR = 3
-    PATCH = 6
+    PATCH = 7
 
     STRING = [MAJOR, MINOR, PATCH].join('.')
   end

metadata

@@ -1,13 +1,13 @@
 --- !ruby/object:Gem::Specification 
 name: lederhosen
 version: !ruby/object:Gem::Version 
-  hash: 31
+  hash: 29
   prerelease: 
   segments: 
   - 0
   - 3
-  - 6
-  version: 0.3.6
+  - 7
+  version: 0.3.7
 platform: ruby
 authors: 
 - Austin G. Davis-Richardson