labimotion 2.1.0 → 2.1.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
checksums.yaml
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@@ -1,7 +1,7 @@
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---
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metadata.gz:
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data.tar.gz:
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metadata.gz: f544de920e1626452d5422b5dd60e29c65f6459c223c92c84176df619e8ddf2e
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data.tar.gz: 16f3da4ab02efa4ac7e4bd0848640b35df87e3d5115809543dde0279cb0e43a1
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SHA512:
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metadata.gz:
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metadata.gz: 356d0de559510fbce5b90eb65db22363c4163d6aabb8281753edf953086ac504b25eea8b9dd1ecf5412873f192027ef8e38b0a38394d62fb79e7e9aa8338a617
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data.tar.gz: 6e4fe1c4dba90988961c704671bc43ed57a310fc0fcf3c410b99e5797de3a6e247e82635ac94edd3d3f271b61091bc83230f57888a94decdc3254de6e73d1d53
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@@ -87,12 +87,13 @@ module Labimotion
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}
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element = Labimotion::Element.new(attributes)
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all_coll = Collection.get_all_collection_for_user(current_user.id)
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element.collections << all_coll
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if params[:collection_id] && params[:collection_id] != all_coll.id
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collection = current_user.collections.find(params[:collection_id])
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element.collections << collection
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end
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all_coll = Collection.get_all_collection_for_user(current_user.id)
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element.collections << all_coll
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element.save!
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element.properties = update_sample_association(params[:properties], current_user, element)
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# element.properties = update_vocabularies(_properties, current_user, element)
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data/lib/labimotion/version.rb
CHANGED
metadata
CHANGED
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--- !ruby/object:Gem::Specification
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name: labimotion
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version: !ruby/object:Gem::Version
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version: 2.1.
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version: 2.1.1
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platform: ruby
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authors:
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- Chia-Lin Lin
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@@ -9,7 +9,7 @@ authors:
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autorequire:
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bindir: bin
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cert_chain: []
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date: 2026-
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date: 2026-03-25 00:00:00.000000000 Z
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dependencies:
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- !ruby/object:Gem::Dependency
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name: caxlsx
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@@ -98,7 +98,6 @@ files:
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- lib/labimotion/helpers/vocabulary_helpers.rb
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- lib/labimotion/libs/attachment_handler.rb
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- lib/labimotion/libs/converter.rb
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- lib/labimotion/libs/data/layer/StdDataset.json
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- lib/labimotion/libs/data/mapper/Chemwiki.json
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- lib/labimotion/libs/data/mapper/Source.json
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- lib/labimotion/libs/data/vocab/Standard.json
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@@ -1,212 +0,0 @@
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{
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"layers": {
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"std_general": {
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"wf": false,
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"key": "std_general",
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"std": true,
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"cols": 4,
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"color": "default",
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"label": "Standard General description",
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"style": "panel_generic_heading",
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"fields": [
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{
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"type": "text",
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"field": "title",
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"label": "title",
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"default": "",
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"ontology": {
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"id": "afo:class:http://purl.allotrope.org/ontologies/result#AFR_0001080",
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"iri": "http://purl.allotrope.org/ontologies/result#AFR_0001080",
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"type": "class",
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"label": "title",
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"obo_id": "AFR:0001080",
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"short_form": "AFR_0001080",
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"description": [
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"A title is a prefix or suffix added to a personal name. A title can be a title of honor, that is a title bestowed as an award, a honorary title (academic), that is a recognition of contributions by a non-employee or employee, a hereditary title, that is a title that remains in a family or a job title, that is a designation of a person's position in an organization. [Wikipedia]"
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],
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"ontology_name": "afo",
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"ontology_prefix": "AFO"
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},
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"position": 1,
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"required": false,
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"sub_fields": [],
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"text_sub_fields": []
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},
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"type": "text",
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"field": "data_type",
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"label": "Type of the data ",
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"default": "",
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"readonly": true,
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"position": 2,
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"required": false,
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"sub_fields": [],
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"description": "Ontologies!!!! type of entity",
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"placeholder": "e.g. sample or reaction analysis",
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"text_sub_fields": []
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},
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{
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"type": "text",
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"field": "date",
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"label": "date",
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"default": "",
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"required": false,
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"sub_fields": [],
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"text_sub_fields": []
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"label": "starting time",
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},
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"field": "contributor",
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"label": "contributor",
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"sub_fields": [],
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"description": "",
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"text_sub_fields": []
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},
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{
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"type": "text",
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"field": "creator",
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"label": "creator",
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"default": "",
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"position": 6,
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"required": false,
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"sub_fields": [],
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"description": "the person who upload the analysis",
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"text_sub_fields": []
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},
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"type": "text",
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"field": "operator",
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"label": "operator",
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"default": "",
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"position": 7,
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"required": false,
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"sub_fields": [],
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"text_sub_fields": []
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},
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{
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"type": "text",
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"field": "comments",
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"label": "comments",
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"default": "",
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"position": 8,
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"required": false,
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"sub_fields": [],
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"text_sub_fields": []
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},
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"opid": 8,
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"type": "text",
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"field": "Producer",
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"label": "Producer of the sample",
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"is_voc": true,
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"source": "Segment",
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"default": "",
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"field_id": "Producer",
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"layer_id": "bsi",
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"ontology": {
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"id": "schema:property:https://schema.org/producer",
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"iri": "https://schema.org/producer",
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"type": "property",
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"label": "producer",
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"obo_id": "schema:producer",
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"short_form": "schema_producer",
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"description": [
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"The person or organization who produced the work (e.g. music album, movie, TV/radio series etc.)."
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],
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"ontology_name": "schema",
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"ontology_prefix": "schema"
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},
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"position": 9,
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"source_id": "dce363d5-56d0-4324-9914-0476be999016",
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"identifier": "357b7cd3-ca47-49e0-be47-154d907c2cf5",
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"sub_fields": [],
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"text_sub_fields": []
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}
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],
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"position": -2,
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"condition": "",
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"wf_position": 0
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},
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"std_sample_details": {
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"wf": false,
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"key": "std_sample_details",
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"cols": 3,
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"std": true,
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"color": "none",
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"label": "Standard Sample details",
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"style": "panel_generic_heading",
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"fields": [
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"field": "label",
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"label": "label",
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"default": "",
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"sub_fields": [],
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"field": "id",
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"sub_fields": [],
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"label": "volume",
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"type": "text",
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"field": "size",
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"label": "size",
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}
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],
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"position": -1,
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"timeRecord": "",
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}
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},
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"version": "0.1",
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"select_options": {
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}
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}
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