khiva 0.1.2 → 0.1.3

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data/CHANGELOG.md

@@ -1,3 +1,7 @@
+## 0.1.3 (2021-02-18)
+
+- Added `chains` method
+
 ## 0.1.2 (2020-12-19)
 
 - Added `find_best_n_occurrences` and `mass` methods

data/README.md

@@ -98,9 +98,14 @@ plt.legend
 Find a similar pattern in time series
 
 ```ruby
-series = Khiva::Array.new([1, 2, 3, 4, 3, 4, 5, 6], type: :f32)
-query = Khiva::Array.new([1, 2, 1], type: :f32)
-distances, indices = Khiva::Matrix.find_best_n_occurrences(query, series, 1)
+series = [1, 1, 1, 3, 4, 1, 1, 1, 1]
+query = [1, 2, 3]
+
+s = Khiva::Array.new(series, type: :f32)
+q = Khiva::Array.new(query, type: :f32)
+_, indices = Khiva::Matrix.find_best_n_occurrences(q, s, 1)
+pos = indices.to_a.first
+similar_subsequence = series[pos, query.size] # [1, 3, 4]
 ```
 
 ## Modules
@@ -714,6 +719,12 @@ Calculate the matrix profile between `t` and itself using a subsequence length o
 profile, index = Khiva::Matrix.matrix_profile_self_join(t, m)
 ```
 
+Get chains
+
+```ruby
+Khiva::Matrix.chains(tss, m)
+```
+
 ## Normalization
 
 Decimal scaling
@@ -818,35 +829,28 @@ Khiva::Statistics.skewness(tss)
 
 ## Khiva Installation
 
-### Linux
+### Linux - Ubuntu
 
-Install Boost and Eigen. On Ubuntu, use:
+Install ArrayFire:
 
 ```sh
-sudo apt-get install libboost-all-dev libeigen3-dev
+sudo apt-key adv --fetch-key https://repo.arrayfire.com/GPG-PUB-KEY-ARRAYFIRE-2020.PUB
+echo "deb [arch=amd64] https://repo.arrayfire.com/ubuntu $(. /etc/os-release && echo $VERSION_CODENAME) main" | sudo tee /etc/apt/sources.list.d/arrayfire.list
+sudo apt-get update
+sudo apt-get install arrayfire-unified3 arrayfire-cpu3-openblas arrayfire-opencl3-openblas
 ```
 
-Install ArrayFire:
+And install Khiva:
 
 ```sh
-wget -q https://arrayfire.s3.amazonaws.com/3.7.3/ArrayFire-v3.7.3_Linux_x86_64.sh
-chmod +x ./ArrayFire-v3.7.3_Linux_x86_64.sh
-./ArrayFire-v3.7.3_Linux_x86_64.sh --include-subdir --prefix=/opt
-echo /opt/arrayfire/lib64 | sudo tee /etc/ld.so.conf.d/arrayfire.conf
+wget https://github.com/shapelets/khiva/releases/download/v0.5.0/khiva-khiva_0.5.0_amd64.deb
+sudo dpkg -i khiva-khiva_0.5.0_amd64.deb
 sudo ldconfig
 ```
 
-And install Khiva:
+### Linux - Other
 
-```sh
-git clone --recursive --branch v0.5.0 https://github.com/shapelets/khiva
-cd khiva
-mkdir build
-cd build
-cmake .. -DKHIVA_USE_CONAN=OFF -DKHIVA_BUILD_TESTS=OFF -DKHIVA_BUILD_BENCHMARKS=OFF -DKHIVA_BUILD_JNI_BINDINGS=OFF
-make -j4
-sudo make install
-```
+See [instructions](https://khiva.readthedocs.io/en/latest/gettingStarted.html).
 
 ### Mac
 
@@ -858,7 +862,7 @@ brew install khiva
 
 ### Windows
 
-See [instructions](https://khiva.readthedocs.io/en/latest/gettingStarted.html#windows).
+See [instructions](https://khiva.readthedocs.io/en/latest/gettingStarted.html).
 
 ## Credits
 

data/lib/khiva/matrix.rb

@@ -57,6 +57,12 @@ module Khiva
         FFI.call(:matrix_profile_self_join, tss, m, profile, index)
         [Array.new(profile), Array.new(index)]
       end
+
+      def chains(tss, m)
+        chains = Fiddle::Pointer.malloc(Fiddle::SIZEOF_VOIDP)
+        FFI.call(:get_chains, tss, m, chains)
+        Array.new(chains)
+      end
     end
   end
 end

data/lib/khiva/version.rb

@@ -1,3 +1,3 @@
 module Khiva
-  VERSION = "0.1.2"
+  VERSION = "0.1.3"
 end

metadata

@@ -1,17 +1,17 @@
 --- !ruby/object:Gem::Specification
 name: khiva
 version: !ruby/object:Gem::Version
-  version: 0.1.2
+  version: 0.1.3
 platform: ruby
 authors:
 - Andrew Kane
 autorequire:
 bindir: bin
 cert_chain: []
-date: 2020-12-20 00:00:00.000000000 Z
+date: 2021-02-19 00:00:00.000000000 Z
 dependencies: []
 description:
-email: andrew@chartkick.com
+email: andrew@ankane.org
 executables: []
 extensions: []
 extra_rdoc_files: []
@@ -55,7 +55,7 @@ required_rubygems_version: !ruby/object:Gem::Requirement
     - !ruby/object:Gem::Version
       version: '0'
 requirements: []
-rubygems_version: 3.1.4
+rubygems_version: 3.2.3
 signing_key:
 specification_version: 4
 summary: High-performance time series algorithms for Ruby