ipa_test_kit 0.2.0 → 0.3.0

checksums.yaml

@@ -1,7 +1,7 @@
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data/lib/ipa_test_kit/custom_groups/v1.0.0/capability_statement/conformance_support_test.rb

@@ -0,0 +1,43 @@
+module IpaTestKit
+  module IpaV100
+    class ConformanceSupportTest < Inferno::Test
+      id :ipa_100_conformance_support
+      title 'FHIR Server supports the conformance interaction'
+      description %(
+        The conformance 'whole system' interaction provides a method to get the
+        CapabilityStatement for the FHIR server. This test checks that the
+        server responds to a `GET` request at the following endpoint:
+
+        ```
+        GET [base]/metadata
+        ```
+
+        This test checks the following SHALL requirement:
+
+        > Applications SHALL return a resource that describes the functionality
+          of the server end-point.
+
+        [http://hl7.org/fhir/R4/http.html#capabilities](http://hl7.org/fhir/R4/http.html#capabilities)
+
+        It does this by checking that the server responds with an HTTP OK 200
+        status code and that the body of the response contains a valid
+        [CapabilityStatement
+        resource](http://hl7.org/fhir/R4/capabilitystatement.html). This test
+        does not inspect the content of the CapabilityStatement to see if it
+        contains the required information. It only checks to see if the RESTful
+        interaction is supported and returns a valid CapabilityStatement
+        resource.
+      )
+      makes_request :capability_statement
+
+      run do
+        fhir_client.set_no_auth
+        fhir_get_capability_statement(name: :capability_statement)
+
+        assert_response_status(200)
+        assert_resource_type(:capability_statement)
+        assert_valid_resource
+      end
+    end
+  end
+end

data/lib/ipa_test_kit/custom_groups/v1.0.0/capability_statement/fhir_version_test.rb

@@ -0,0 +1,17 @@
+module IpaTestKit
+  module IpaV100
+    class FHIRVersionTest < Inferno::Test
+      id :ipa_100_fhir_version
+      title 'Server is using FHIR R4'
+      description %(
+          This test inspects the CapabilityStatement returned by the server to
+          verify that the server is using FHIR R4.
+        )
+
+      run do
+        server_version = fhir_client.detect_version.to_s.upcase
+        assert server_version == 'R4', "Server is using FHIR version #{server_version} rather than R4"
+      end
+    end
+  end
+end

data/lib/ipa_test_kit/custom_groups/v1.0.0/capability_statement/instantiates_ig_test.rb

@@ -0,0 +1,22 @@
+module IpaTestKit
+  module IpaV100
+    class InstantiatesIGTest < Inferno::Test
+      id :ipa_100_instantiates_ig
+      title 'FHIR server advertises support for the IPA IG'
+      description %(
+        The server declares that IPA is supported using
+        `CapabilityStatement.instantiates`
+      )
+      uses_request :capability_statement
+
+      run do
+        assert_resource_type(:capability_statement)
+
+        ig_url = 'http://hl7.org/fhir/uv/ipa/CapabilityStatement/ipa'
+
+        assert resource.instantiates.include?(ig_url),
+               "The server does not advertise support for the IPA IG by including `#{ig_url}` in the `instantiates` field"
+      end
+    end
+  end
+end

data/lib/ipa_test_kit/custom_groups/v1.0.0/capability_statement/json_support_test.rb

@@ -0,0 +1,41 @@
+module IpaTestKit
+  module IpaV100
+    class JSONSupportTest < Inferno::Test
+      id :ipa_100_json_support
+      title 'FHIR server capability states JSON support'
+      description %(
+        FHIR provides multiple [representation
+        formats](https://www.hl7.org/fhir/formats.html) for resources, including
+        JSON and XML. IPA profiles require servers to use the [JSON
+        representation](https://www.hl7.org/fhir/json.html):
+
+        [```The IPA Server **SHALL** Support json source formats for all IPA
+        interactions.```](http://hl7.org/fhir/uv/ipa/CapabilityStatement-ipa-server.html#behavior)
+
+        The FHIR conformance interaction require servers to describe which
+        formats are available for clients to use. The server must explicitly
+        state that JSON is supported. This is located in the [format
+        element](https://www.hl7.org/fhir/capabilitystatement-definitions.html#CapabilityStatement.format)
+        of the CapabilityStatement Resource.
+
+        This test checks that one of the following values are located in the
+        format field.
+
+        * json
+        * application/json
+        * application/fhir+json
+      )
+      uses_request :capability_statement
+
+      run do
+        assert_resource_type(:capability_statement)
+
+        json_formats = ['json', 'application/json', 'application/fhir+json']
+        server_formats = resource.format
+
+        assert server_formats.any? { |format| json_formats.include? format },
+                'CapabilityStatement does not state support for JSON'
+      end
+    end
+  end
+end

data/lib/ipa_test_kit/custom_groups/v1.0.0/capability_statement/profile_support_test.rb

@@ -0,0 +1,65 @@
+module IpaTestKit
+  module IpaV100
+    class ProfileSupportTest < Inferno::Test
+      id :ipa_100_profile_support
+      title 'Capability Statement lists support for required IPA Profiles'
+      description %(
+        The IPA Implementation Guide states:
+
+        ```
+        The IPA Server SHALL:
+        1. Support the IPA Patient resource profile.
+        2. Support at least one additional resource profile from the list of IPA
+            Profiles.
+        ```
+      )
+      uses_request :capability_statement
+
+      PROFILES = {
+        'AllergyIntolerance' => ['http://hl7.org/fhir/uv/ipa/StructureDefinition/ipa-allergyintolerance'].freeze,
+        'Condition' => ['http://hl7.org/fhir/uv/ipa/StructureDefinition/ipa-condition'].freeze,
+        'DocumentReference' => ['http://hl7.org/fhir/uv/ipa/StructureDefinition/ipa-documentreference'].freeze,
+        'Immunization' => ['http://hl7.org/fhir/uv/ipa/StructureDefinition/ipa-immunization'].freeze,
+        # 'Medication' => ['http://hl7.org/fhir/uv/ipa/StructureDefinition/ipa-medication'].freeze,
+        'MedicationRequest' => ['http://hl7.org/fhir/uv/ipa/StructureDefinition/ipa-medicationrequest'].freeze,
+        'MedicationStatement' => ['http://hl7.org/fhir/uv/ipa/StructureDefinition/ipa-medicationstatement'].freeze,
+        'Observation' => [
+          'http://hl7.org/fhir/uv/ipa/StructureDefinition/ipa-observation'
+        ].freeze,
+        'Patient' => ['http://hl7.org/fhir/uv/ipa/StructureDefinition/ipa-patient'].freeze,
+        'Practitioner' => ['http://hl7.org/fhir/uv/ipa/StructureDefinition/ipa-practitioner'].freeze,
+        'PractitionerRole' => ['http://hl7.org/fhir/uv/ipa/StructureDefinition/ipa-practitionerrole'].freeze
+      }.freeze
+
+      run do
+        assert_resource_type(:capability_statement)
+        capability_statement = resource
+
+        supported_resources =
+          capability_statement.rest
+            &.each_with_object([]) do |rest, resources|
+              rest.resource.each { |resource| resources << resource.type }
+            end.uniq
+        supported_profiles =
+          capability_statement.rest
+            &.flat_map(&:resource)
+            &.flat_map { |resource| resource.supportedProfile + [resource.profile] }
+            &.compact || []
+        supported_profiles.map! { |profile_url| profile_url.split('|').first }
+
+        assert supported_resources.include?('Patient'), 'IPA Patient profile not supported'
+
+        other_resources = PROFILES.keys.reject { |resource_type| resource_type == 'Patient' }
+        other_resources_supported = other_resources.any? { |resource| supported_resources.include? resource }
+        assert other_resources_supported, 'No IPA resources other than Patient are supported'
+
+        required_profiles = PROFILES.slice(*supported_resources).values.flatten
+
+        missing_profiles = required_profiles - supported_profiles
+
+        assert missing_profiles.blank?,
+               "CapabilityStatement does not claim support for the following IPA profiles: \n* #{missing_profiles.join("\n* ")}"
+      end
+    end
+  end
+end

data/lib/ipa_test_kit/custom_groups/v1.0.0/capability_statement_group.rb

@@ -0,0 +1,73 @@
+require 'tls_test_kit'
+require_relative 'capability_statement/conformance_support_test'
+require_relative 'capability_statement/fhir_version_test'
+require_relative 'capability_statement/instantiates_ig_test'
+require_relative 'capability_statement/json_support_test'
+require_relative 'capability_statement/profile_support_test'
+
+module IpaTestKit
+  module IpaV100
+    class CapabilityStatementGroup < Inferno::TestGroup
+      id :ipa_v100_capability_statement
+      title 'Capability Statement'
+      short_description 'Retrieve information about supported server functionality using the FHIR capabilties interaction.'
+      description %(
+        # Background
+        The #{title} Sequence tests a FHIR server's ability to formally describe
+        features supported by the API by using the [Capability
+        Statement](https://www.hl7.org/fhir/capabilitystatement.html) resource.
+        The features described in the Capability Statement must be consistent with
+        the required capabilities of a IPA server. The Capability Statement
+        must also advertise the location of the required SMART on FHIR endpoints
+        that enable authenticated access to the FHIR server resources.
+
+        The Capability Statement resource allows clients to determine which
+        resources are supported by a FHIR Server. Not all servers are expected to
+        implement all possible queries and data elements described in the IPA
+        API. For example, the IPA Implementation Guide requires that the
+        Patient resource and only one additional resource profile from the IPA
+        Profiles.
+
+        # Test Methodology
+
+        This test sequence accesses the server endpoint at `/metadata` using a
+        `GET` request. It parses the Capability Statement and verifies that:
+
+        * The endpoint is secured by an appropriate cryptographic protocol
+        * The resource matches the expected FHIR version defined by the tests
+        * The resource is a valid FHIR resource
+        * The server claims support for JSON encoding of resources
+        * The server claims support for the Patient resource and one other
+          resource
+
+        It collects the following information that is saved in the testing session
+        for use by later tests:
+
+        * List of resources supported
+        * List of queries parameters supported
+      )
+      run_as_group
+
+      input :standalone_smart_credentials,
+            title: 'SMART App Launch Credentials',
+            optional: true,
+            type: 'oauth_credentials'
+
+      test from: :tls_version_test,
+          id: :standalone_auth_tls,
+          title: 'FHIR server secured by transport layer security',
+          description: %(
+            Systems **SHALL** use TLS version 1.2 or higher for all transmissions
+            not taking place over a secure network connection.
+          ),
+          config: {
+            options: {  minimum_allowed_version: OpenSSL::SSL::TLS1_2_VERSION }
+          }
+      test from: :ipa_100_conformance_support
+      test from: :ipa_100_fhir_version
+      test from: :ipa_100_json_support
+      test from: :ipa_100_instantiates_ig
+      test from: :ipa_100_profile_support
+    end
+  end
+end

data/lib/ipa_test_kit/custom_groups/v1.0.0/ipa_smart_launch_group.rb

@@ -0,0 +1,108 @@
+module IpaTestKit
+  module IpaV100
+    class IPASMARTLaunchGroup < Inferno::TestGroup
+      id :ipa_v100_smart_launch
+      title 'SMART App Launch'
+      description %(
+        # Background
+        Applications authorize to gain access to a patient record using the
+        [SMART App Launch
+        Protocol](http://hl7.org/fhir/smart-app-launch/STU2/)'s standalone
+        launch sequence.
+
+        # Testing Methodology
+        These tests first access the server's SMART discovery endpoints and
+        verify that they are available and that the server advertises support
+        for the required SMART capabilities. They then perform a public
+        standalone launch to obtain an access token which can be used by the
+        remaining tests to access patient data.
+
+        This group does not yet test launching with asymmetric client
+        credentials, which is also required.
+      )
+
+      group from: :smart_discovery_stu2 do
+        run_as_group
+
+        test do
+          id :ipa_smart_capabilities
+          title 'Server supports required SMART capabilities'
+          description %(
+            Servers SHALL support the following [SMART on FHIR
+            capabilities](http://hl7.org/fhir/smart-app-launch/STU2/conformance.html#capabilities):
+
+            * `launch-standalone`
+            * `context-standalone-patient`
+            * `permission-patient`
+            * `permission-offline`
+            * `sso-openid-connect`
+            * `client-public`
+            * `client-confidential-asymmetric`
+          )
+
+          input :well_known_configuration
+
+          run do
+            skip_if well_known_configuration.blank?, "No SMART well-known configuration received"
+
+            assert_valid_json(well_known_configuration)
+
+            config = JSON.parse(well_known_configuration)
+            advertised_capabilities = config['capabilities'] || []
+
+            assert advertised_capabilities.is_a?(Array),
+                   "Expected `capabilities` field to be an Array, but found #{advertised_capabilities.class.name}"
+
+            required_capabilities = [
+              'launch-standalone',
+              'context-standalone-patient',
+              'permission-patient',
+              'permission-offline',
+              'sso-openid-connect',
+              'client-public',
+              'client-confidential-asymmetric'
+            ]
+
+            missing_capabilities = required_capabilities - advertised_capabilities
+
+            missing_capabilities_string =
+              missing_capabilities
+                .map { |capability| "\n* `#{capability}`" }
+                .join
+
+            assert missing_capabilities.empty?,
+                   "Server did not advertise support for the following required capabilities: #{missing_capabilities_string}"
+          end
+        end
+      end
+
+      group from: :smart_standalone_launch_stu2,
+            run_as_group: true,
+            title: 'SMART Public Standalone Launch',
+            config: {
+              inputs: {
+                client_secret: {
+                  default: nil,
+                  locked: true,
+                  optional: true
+                }
+              }
+            }
+
+      group do
+        title 'SMART Asymmetric Standalone Launch'
+        description %(
+          Not yet implemented
+        )
+        run_as_group
+
+        test do
+          title 'Not yet implemented'
+          run do
+            omit 'Not yet implemented'
+          end
+        end
+      end
+    end
+  end
+end

data/lib/ipa_test_kit/fhir_resource_navigation.rb

@@ -1,11 +1,14 @@
 module IpaTestKit
   module FHIRResourceNavigation
+    DAR_EXTENSION_URL = 'http://hl7.org/fhir/StructureDefinition/data-absent-reason'.freeze
+
     def resolve_path(elements, path)
       elements = Array.wrap(elements)
       return elements if path.blank?
 
       paths = path.split('.')
       segment = paths.first
+      segment.delete_suffix! '[x]'
       remaining_path = paths.drop(1).join('.')
 
       elements.flat_map do |element|
@@ -14,12 +17,18 @@ module IpaTestKit
       end.compact
     end
 
-    def find_a_value_at(element, path)
+    def find_a_value_at(element, path, include_dar: false)
       return nil if element.nil?
 
       elements = Array.wrap(element)
 
       if path.empty?
+        unless include_dar
+          elements = elements.reject do |el|
+            el.respond_to?(:extension) && el.extension.any? { |ext| ext.url == DAR_EXTENSION_URL}
+          end
+        end
+
         return elements.find { |el| yield(el) } if block_given?
 
         return elements.first
@@ -43,9 +52,9 @@ module IpaTestKit
         child = get_next_value(element, segment)
         element_found =
           if block_given?
-            find_a_value_at(child, remaining_path) { |value_found| yield(value_found) }
+            find_a_value_at(child, remaining_path, include_dar: include_dar) { |value_found| yield(value_found) }
           else
-            find_a_value_at(child, remaining_path)
+            find_a_value_at(child, remaining_path, include_dar: include_dar)
           end
 
         return element_found if element_found.present? || element_found == false

data/lib/ipa_test_kit/generated/v1.0.0/allergy_intolerance/allergy_intolerance_must_support_test.rb

@@ -0,0 +1,46 @@
+require_relative '../../../must_support_test'
+
+module IpaTestKit
+  module IpaV100
+    class AllergyIntoleranceMustSupportTest < Inferno::Test
+      include IpaTestKit::MustSupportTest
+
+      title 'All must support elements are provided in the AllergyIntolerance resources returned'
+      description %(
+        Responders conforming to a profile in IPA SHALL return a Must Support
+        element if that element is available. This test will look through the
+        AllergyIntolerance resources found previously for the following must
+        support elements:
+
+        * AllergyIntolerance.clinicalStatus
+        * AllergyIntolerance.code
+        * AllergyIntolerance.patient
+        * AllergyIntolerance.verificationStatus
+
+        Note: Responders who cannot store or return a data element tagged as
+        Supported in IPA profiles can still claim conformance to the IPA
+        profiles per the IPA conformance resources.
+      )
+
+      id :ipa_v100_allergy_intolerance_must_support_test
+
+      optional
+
+      def resource_type
+        'AllergyIntolerance'
+      end
+
+      def self.metadata
+        @metadata ||= Generator::GroupMetadata.new(YAML.load_file(File.join(__dir__, 'metadata.yml'), aliases: true))
+      end
+
+      def scratch_resources
+        scratch[:allergy_intolerance_resources] ||= {}
+      end
+
+      run do
+        perform_must_support_test(all_scratch_resources)
+      end
+    end
+  end
+end

data/lib/ipa_test_kit/generated/v1.0.0/allergy_intolerance/allergy_intolerance_patient_clinical_status_search_test.rb

@@ -0,0 +1,50 @@
+require_relative '../../../search_test'
+require_relative '../../../generator/group_metadata'
+
+module IpaTestKit
+  module IpaV100
+    class AllergyIntolerancePatientClinicalStatusSearchTest < Inferno::Test
+      include IpaTestKit::SearchTest
+
+      title 'Server returns valid results for AllergyIntolerance search by patient + clinical-status'
+      description %(
+A server SHOULD support searching by
+patient + clinical-status on the AllergyIntolerance resource. This test
+will pass if resources are returned and match the search criteria. If
+none are returned, the test is skipped.
+
+# TODO: Fix this
+# [US Core Server CapabilityStatement](http://hl7.org/fhir/us/core//CapabilityStatement-us-core-server.html)
+
+
+      )
+
+      id :ipa_v100_allergy_intolerance_patient_clinical_status_search_test
+      optional
+  
+      input :patient_ids,
+        title: 'Patient IDs',
+        description: 'Comma separated list of patient IDs that in sum contain all MUST SUPPORT elements'
+  
+      def self.properties
+        @properties ||= SearchTestProperties.new(
+          resource_type: 'AllergyIntolerance',
+        search_param_names: ['patient', 'clinical-status'],
+        token_search_params: ['clinical-status']
+        )
+      end
+
+      def self.metadata
+        @metadata ||= Generator::GroupMetadata.new(YAML.load_file(File.join(__dir__, 'metadata.yml'), aliases: true))
+      end
+
+      def scratch_resources
+        scratch[:allergy_intolerance_resources] ||= {}
+      end
+
+      run do
+        run_search_test
+      end
+    end
+  end
+end

data/lib/ipa_test_kit/generated/v1.0.0/allergy_intolerance/allergy_intolerance_patient_search_test.rb

@@ -0,0 +1,63 @@
+require_relative '../../../search_test'
+require_relative '../../../generator/group_metadata'
+
+module IpaTestKit
+  module IpaV100
+    class AllergyIntolerancePatientSearchTest < Inferno::Test
+      include IpaTestKit::SearchTest
+
+      title 'Server returns valid results for AllergyIntolerance search by patient'
+      description %(
+A server SHALL support searching by
+patient on the AllergyIntolerance resource. This test
+will pass if resources are returned and match the search criteria. If
+none are returned, the test is skipped.
+
+This test verifies that the server supports searching by reference using
+the form `patient=[id]` as well as `patient=Patient/[id]`. The two
+different forms are expected to return the same number of results. IPA
+requires that both forms are supported by IPA Core responders.
+
+Because this is the first search of the sequence, resources in the
+response will be used for subsequent tests.
+
+Additionally, this test will check that GET and POST search methods
+return the same number of results. Search by POST is required by the
+FHIR R4 specification, and these tests interpret search by GET as a
+requirement of IPA v1.0.0.
+
+# TODO: Fix this
+# [US Core Server CapabilityStatement](http://hl7.org/fhir/us/core//CapabilityStatement-us-core-server.html)
+
+
+      )
+
+      id :ipa_v100_allergy_intolerance_patient_search_test
+      input :patient_ids,
+        title: 'Patient IDs',
+        description: 'Comma separated list of patient IDs that in sum contain all MUST SUPPORT elements'
+  
+      def self.properties
+        @properties ||= SearchTestProperties.new(
+          first_search: true,
+        resource_type: 'AllergyIntolerance',
+        search_param_names: ['patient'],
+        test_reference_variants: true,
+        test_post_search: true
+        )
+      end
+
+      def self.metadata
+        @metadata ||= Generator::GroupMetadata.new(YAML.load_file(File.join(__dir__, 'metadata.yml'), aliases: true))
+      end
+
+      def scratch_resources
+        scratch[:allergy_intolerance_resources] ||= {}
+      end
+
+      run do
+        run_search_test
+      end
+    end
+  end
+end

data/lib/ipa_test_kit/generated/v1.0.0/allergy_intolerance/allergy_intolerance_provenance_revinclude_search_test.rb

@@ -0,0 +1,51 @@
+require_relative '../../../search_test'
+require_relative '../../../generator/group_metadata'
+
+module IpaTestKit
+  module IpaV100
+    class AllergyIntoleranceProvenanceRevincludeSearchTest < Inferno::Test
+      include IpaTestKit::SearchTest
+
+      title 'Server returns Provenance resources from AllergyIntolerance search by patient + revInclude:Provenance:target'
+      description %(
+        A server SHALL be capable of supporting _revIncludes:Provenance:target.
+
+        This test will perform a search by patient + revInclude:Provenance:target and
+        will pass if a Provenance resource is found in the response.
+      %)
+
+      id :ipa_v100_allergy_intolerance_provenance_revinclude_search_test
+  
+      input :patient_ids,
+        title: 'Patient IDs',
+        description: 'Comma separated list of patient IDs that in sum contain all MUST SUPPORT elements'
+  
+      def properties
+        @properties ||= SearchTestProperties.new(
+          resource_type: 'AllergyIntolerance',
+        search_param_names: ['patient']
+        )
+      end
+
+      def self.metadata
+        @metadata ||= Generator::GroupMetadata.new(YAML.load_file(File.join(__dir__, 'metadata.yml')))
+      end
+
+      def self.provenance_metadata
+        # @provenance_metadata ||= Generator::GroupMetadata.new(YAML.load_file(File.join(__dir__, '..', 'provenance', 'metadata.yml'), aliases: true))
+      end
+
+      def scratch_resources
+        scratch[:allergy_intolerance_resources] ||= {}
+      end
+
+      def scratch_provenance_resources
+        scratch[:provenance_resources] ||= {}
+      end
+
+      run do
+        run_provenance_revinclude_search_test
+      end
+    end
+  end
+end

data/lib/ipa_test_kit/generated/v1.0.0/allergy_intolerance/allergy_intolerance_read_test.rb

@@ -0,0 +1,26 @@
+require_relative '../../../read_test'
+
+module IpaTestKit
+  module IpaV100
+    class AllergyIntoleranceReadTest < Inferno::Test
+      include IpaTestKit::ReadTest
+
+      title 'Server returns correct AllergyIntolerance resource from AllergyIntolerance read interaction'
+      description 'A server SHALL support the AllergyIntolerance read interaction.'
+
+      id :ipa_v100_allergy_intolerance_read_test
+
+      def resource_type
+        'AllergyIntolerance'
+      end
+
+      def scratch_resources
+        scratch[:allergy_intolerance_resources] ||= {}
+      end
+
+      run do
+        perform_read_test(all_scratch_resources)
+      end
+    end
+  end
+end