imzml 0.1.1 → 0.1.4
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/lib/imzml/metadata/run/spectrum.rb +7 -35
- data/lib/imzml/version.rb +1 -1
- metadata +2 -2
checksums.yaml
CHANGED
@@ -1,7 +1,7 @@
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---
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SHA1:
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3
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-
metadata.gz:
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4
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-
data.tar.gz:
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3
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+
metadata.gz: c52da2783768c7aa8c665b2cee9fe78abc5d5b3a
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4
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data.tar.gz: 5cc44fda48e8f4098197b170fe48c4a1b369283d
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SHA512:
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6
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-
metadata.gz:
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7
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-
data.tar.gz:
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6
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+
metadata.gz: 216c0b0d091f68511c0184130a89f01c9bd29228875c39f39927ac9ad5dc1dbd05fa577c3e63fb170c04b74e5f6d1760b138d14b7afc64a6928776e7146beef9
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7
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+
data.tar.gz: eb0f16e382adb599f20fdc949c16851d2778bf236103c5fc1fd701a867ec9910304504c6da55be3908ffc8a759771f8cd66b355f5080d3bdcdcfd28eb8680cea
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@@ -36,8 +36,8 @@ module ImzML
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# Binary values type [:int8, :int16, :int32, :int64, :float32, :float64]
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attr_accessor :type
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-
#
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-
def data(cached =
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# Grabs the actual binary data from disk
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def data(cached = false)
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# Return the data from the cache
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return @cached_data if cached && !@cached_data.nil?
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@@ -65,7 +65,11 @@ module ImzML
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data = IO.binread(@filepath, @encoded_length.to_i, @offset.to_i).unpack("#{pattern}*")
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# Save data only if user want's to cache it, saving take some CPU
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-
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if cached
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@cached_data = data
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else
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data
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end
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end
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private
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@@ -91,38 +95,6 @@ module ImzML
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# Represented by class BinaryData
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attr_accessor :intensity_binary
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-
def intensity(at, interval)
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-
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# read whole the binary data
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-
mz_array = mz_binary.data
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intensity_array = intensity_binary.data
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-
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default_from, default_to = mz_array.first, mz_array.first
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from = default_from
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to = default_to
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-
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# find designated intensity
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if at
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from = at - interval
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from = default_from if from < 0
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to = at + interval
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to = default_to if to > mz_array.last
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end
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-
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# find values in mz array
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low_value = mz_array.bsearch { |x| x >= from }
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low_index = mz_array.index(low_value)
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high_value = mz_array.bsearch { |x| x >= to }
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high_index = mz_array.index(high_value)
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-
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# sum all values in subarray
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sum = intensity_array[low_index..high_index].inject{|sum, x| sum + x}
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sum
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end
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-
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end
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end
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data/lib/imzml/version.rb
CHANGED
metadata
CHANGED
@@ -1,14 +1,14 @@
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--- !ruby/object:Gem::Specification
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name: imzml
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version: !ruby/object:Gem::Version
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-
version: 0.1.
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version: 0.1.4
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platform: ruby
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authors:
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- Ondra Beneš
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autorequire:
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bindir: bin
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cert_chain: []
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-
date: 2014-05-
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+
date: 2014-05-25 00:00:00.000000000 Z
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dependencies:
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- !ruby/object:Gem::Dependency
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name: minitest
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