imzml 0.1.1 → 0.1.4
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/lib/imzml/metadata/run/spectrum.rb +7 -35
- data/lib/imzml/version.rb +1 -1
- metadata +2 -2
checksums.yaml
CHANGED
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@@ -1,7 +1,7 @@
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1
1
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---
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2
2
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SHA1:
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3
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-
metadata.gz:
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4
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-
data.tar.gz:
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3
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+
metadata.gz: c52da2783768c7aa8c665b2cee9fe78abc5d5b3a
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4
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data.tar.gz: 5cc44fda48e8f4098197b170fe48c4a1b369283d
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5
5
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SHA512:
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6
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-
metadata.gz:
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7
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-
data.tar.gz:
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6
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+
metadata.gz: 216c0b0d091f68511c0184130a89f01c9bd29228875c39f39927ac9ad5dc1dbd05fa577c3e63fb170c04b74e5f6d1760b138d14b7afc64a6928776e7146beef9
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7
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data.tar.gz: eb0f16e382adb599f20fdc949c16851d2778bf236103c5fc1fd701a867ec9910304504c6da55be3908ffc8a759771f8cd66b355f5080d3bdcdcfd28eb8680cea
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@@ -36,8 +36,8 @@ module ImzML
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# Binary values type [:int8, :int16, :int32, :int64, :float32, :float64]
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attr_accessor :type
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#
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-
def data(cached =
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# Grabs the actual binary data from disk
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def data(cached = false)
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# Return the data from the cache
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return @cached_data if cached && !@cached_data.nil?
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@@ -65,7 +65,11 @@ module ImzML
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data = IO.binread(@filepath, @encoded_length.to_i, @offset.to_i).unpack("#{pattern}*")
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# Save data only if user want's to cache it, saving take some CPU
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-
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if cached
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@cached_data = data
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else
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data
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end
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end
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private
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@@ -91,38 +95,6 @@ module ImzML
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# Represented by class BinaryData
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attr_accessor :intensity_binary
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-
def intensity(at, interval)
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95
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-
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# read whole the binary data
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-
mz_array = mz_binary.data
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intensity_array = intensity_binary.data
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-
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default_from, default_to = mz_array.first, mz_array.first
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-
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from = default_from
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to = default_to
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-
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# find designated intensity
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if at
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from = at - interval
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from = default_from if from < 0
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to = at + interval
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to = default_to if to > mz_array.last
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end
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-
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# find values in mz array
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low_value = mz_array.bsearch { |x| x >= from }
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low_index = mz_array.index(low_value)
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high_value = mz_array.bsearch { |x| x >= to }
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high_index = mz_array.index(high_value)
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-
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# sum all values in subarray
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sum = intensity_array[low_index..high_index].inject{|sum, x| sum + x}
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-
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sum
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-
end
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-
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-
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end
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end
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data/lib/imzml/version.rb
CHANGED
metadata
CHANGED
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@@ -1,14 +1,14 @@
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1
1
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--- !ruby/object:Gem::Specification
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name: imzml
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version: !ruby/object:Gem::Version
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-
version: 0.1.
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4
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version: 0.1.4
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platform: ruby
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authors:
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- Ondra Beneš
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autorequire:
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bindir: bin
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cert_chain: []
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-
date: 2014-05-
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date: 2014-05-25 00:00:00.000000000 Z
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dependencies:
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- !ruby/object:Gem::Dependency
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name: minitest
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