immunoscore_results_aggregator 0.0.9 → 0.1.0

checksums.yaml

@@ -1,7 +1,7 @@
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data/Gemfile

@@ -5,6 +5,7 @@ gem 'gibberish'
 gem 'bicrypt'
 gem "thor"
 gem "bson_ext"
+gem "i18n", "0.6.4"
 
 
 

data/Gemfile.lock

@@ -13,7 +13,7 @@ GEM
       bson (~> 1.11.1)
     builder (3.0.4)
     gibberish (1.4.0)
-    i18n (0.6.11)
+    i18n (0.6.4)
     mongo (1.11.1)
       bson (= 1.11.1)
     mongo_mapper (0.12.0)
@@ -32,5 +32,6 @@ DEPENDENCIES
   bicrypt
   bson_ext
   gibberish
+  i18n (= 0.6.4)
   mongo_mapper (= 0.12.0)
   thor

data/bin/immunoscore_cli.rb

@@ -36,7 +36,7 @@ class CliSummary < Thor                                                 # [1]
   # def list(search="")
   #   # list everything
   # end
-  desc "export_summary_csv [N]", "merges and exports all stat results; export filename as an argument "
+  desc "export_summary_csv [export filename]", "merges and exports all stat results; export filename as an argument "
   def export_summary_csv all_results_file_name="all_definiens_results_#{Date.today.to_s}.csv"
     write_stats_csv all_results_file_name
     puts "\n\n\n"
@@ -61,7 +61,7 @@ class CliSummary < Thor                                                 # [1]
   def show_config
     ShowConfig.show_config
   end
-  desc "edit config", "edit config file; no argumens"
+  desc "edit_config", "edit config file; will open file in emacs;  no argumens"
   def edit_config
     begin 
       `emacs #{ShowConfig.show_config}`

data/immunoscore_results_aggregator.gemspec

@@ -5,7 +5,7 @@ require 'immunoscore_results_aggregator/version'
 
 Gem::Specification.new do |s|
   s.name        = 'immunoscore_results_aggregator'
-  s.version     = '0.0.9'
+  s.version     = '0.1.0'
   s.date        = '2014-10-01'
   s.add_runtime_dependency 'bundler', '~> 1.6', '= 1.7'
   s.add_runtime_dependency  "mongo_mapper", '0.12.0'

metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: immunoscore_results_aggregator
 version: !ruby/object:Gem::Version
-  version: 0.0.9
+  version: 0.1.0
 platform: ruby
 authors:
 - Carlo Bifulco
@@ -129,24 +129,6 @@ files:
 - bin/immunoscore_cli.rb
 - config.rb
 - data_struct.rb
-- docs/aggregator.html
-- docs/analyzer.html
-- docs/data_struct.html
-- docs/database_connection.html
-- docs/docco.css
-- docs/exporter.html
-- docs/immunoscore_results_loader.html
-- docs/public/fonts/aller-bold.eot
-- docs/public/fonts/aller-bold.ttf
-- docs/public/fonts/aller-bold.woff
-- docs/public/fonts/aller-light.eot
-- docs/public/fonts/aller-light.ttf
-- docs/public/fonts/aller-light.woff
-- docs/public/fonts/novecento-bold.eot
-- docs/public/fonts/novecento-bold.ttf
-- docs/public/fonts/novecento-bold.woff
-- docs/public/stylesheets/normalize.css
-- docs/semicolon_cleaner.html
 - immunoscore_results_aggregator.gemspec
 - immunoscore_results_aggregator.rb
 - lib/analyzer.rb

data/docs/docco.css

@@ -1,506 +0,0 @@
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-    margin: 0 2px;
-    padding: 0.35em 0.625em 0.75em;
-}
-
-/*
- * 1. Corrects color not being inherited in IE 8/9.
- * 2. Remove padding so people aren't caught out if they zero out fieldsets.
- */
-
-legend {
-    border: 0; /* 1 */
-    padding: 0; /* 2 */
-}
-
-/*
- * 1. Corrects font family not being inherited in all browsers.
- * 2. Corrects font size not being inherited in all browsers.
- * 3. Addresses margins set differently in Firefox 4+, Safari 5, and Chrome
- */
-
-button,
-input,
-select,
-textarea {
-    font-family: inherit; /* 1 */
-    font-size: 100%; /* 2 */
-    margin: 0; /* 3 */
-}
-
-/*
- * Addresses Firefox 4+ setting `line-height` on `input` using `!important` in
- * the UA stylesheet.
- */
-
-button,
-input {
-    line-height: normal;
-}
-
-/*
- * 1. Avoid the WebKit bug in Android 4.0.* where (2) destroys native `audio`
- *    and `video` controls.
- * 2. Corrects inability to style clickable `input` types in iOS.
- * 3. Improves usability and consistency of cursor style between image-type
- *    `input` and others.
- */
-
-button,
-html input[type="button"], /* 1 */
-input[type="reset"],
-input[type="submit"] {
-    -webkit-appearance: button; /* 2 */
-    cursor: pointer; /* 3 */
-}
-
-/*
- * Re-set default cursor for disabled elements.
- */
-
-button[disabled],
-input[disabled] {
-    cursor: default;
-}
-
-/*
- * 1. Addresses box sizing set to `content-box` in IE 8/9.
- * 2. Removes excess padding in IE 8/9.
- */
-
-input[type="checkbox"],
-input[type="radio"] {
-    box-sizing: border-box; /* 1 */
-    padding: 0; /* 2 */
-}
-
-/*
- * 1. Addresses `appearance` set to `searchfield` in Safari 5 and Chrome.
- * 2. Addresses `box-sizing` set to `border-box` in Safari 5 and Chrome
- *    (include `-moz` to future-proof).
- */
-
-input[type="search"] {
-    -webkit-appearance: textfield; /* 1 */
-    -moz-box-sizing: content-box;
-    -webkit-box-sizing: content-box; /* 2 */
-    box-sizing: content-box;
-}
-
-/*
- * Removes inner padding and search cancel button in Safari 5 and Chrome
- * on OS X.
- */
-
-input[type="search"]::-webkit-search-cancel-button,
-input[type="search"]::-webkit-search-decoration {
-    -webkit-appearance: none;
-}
-
-/*
- * Removes inner padding and border in Firefox 4+.
- */
-
-button::-moz-focus-inner,
-input::-moz-focus-inner {
-    border: 0;
-    padding: 0;
-}
-
-/*
- * 1. Removes default vertical scrollbar in IE 8/9.
- * 2. Improves readability and alignment in all browsers.
- */
-
-textarea {
-    overflow: auto; /* 1 */
-    vertical-align: top; /* 2 */
-}
-
-/* ==========================================================================
-   Tables
-   ========================================================================== */
-
-/*
- * Remove most spacing between table cells.
- */
-
-table {
-    border-collapse: collapse;
-    border-spacing: 0;
-}