igraph 0.9.0 → 0.9.1
Sign up to get free protection for your applications and to get access to all the features.
- data/Rakefile.rb +1 -1
- data/ext/cIGraph.c +27 -2
- data/ext/cIGraph_file.c +3 -0
- data/test/tc_file_read_write.rb +84 -3
- data/test/test_all.rb +2 -0
- metadata +2 -2
data/Rakefile.rb
CHANGED
data/ext/cIGraph.c
CHANGED
@@ -164,6 +164,10 @@ VALUE cIGraph_initialize(int argc, VALUE *argv, VALUE self){
|
|
164
164
|
|
165
165
|
}
|
166
166
|
|
167
|
+
VALUE cIGraph_unavailable_method(int argc, VALUE *argv, VALUE self){
|
168
|
+
rb_raise(rb_eNoMethodError,"Method not available on OSX");
|
169
|
+
}
|
170
|
+
|
167
171
|
/* Interface to the iGraph[http://cneurocvs.rmki.kfki.hu/igraph/] library
|
168
172
|
* for graph and network computation.
|
169
173
|
*
|
@@ -453,6 +457,16 @@ void Init_igraph(){
|
|
453
457
|
cIGraph_fileread = rb_define_module_under(cIGraph, "FileRead");
|
454
458
|
rb_include_module(cIGraph, cIGraph_fileread);
|
455
459
|
|
460
|
+
#ifdef __APPLE__
|
461
|
+
rb_define_singleton_method(cIGraph_fileread, "read_graph_edgelist", cIGraph_unavailable_method, -1);
|
462
|
+
rb_define_singleton_method(cIGraph_fileread, "read_graph_graphml", cIGraph_unavailable_method, -1);
|
463
|
+
rb_define_singleton_method(cIGraph_fileread, "read_graph_ncol", cIGraph_unavailable_method, -1);
|
464
|
+
rb_define_singleton_method(cIGraph_fileread, "read_graph_lgl", cIGraph_unavailable_method, -1);
|
465
|
+
rb_define_singleton_method(cIGraph_fileread, "read_graph_dimacs", cIGraph_unavailable_method, -1);
|
466
|
+
rb_define_singleton_method(cIGraph_fileread, "read_graph_graphdb", cIGraph_unavailable_method, -1);
|
467
|
+
rb_define_singleton_method(cIGraph_fileread, "read_graph_gml", cIGraph_unavailable_method, -1);
|
468
|
+
rb_define_singleton_method(cIGraph_fileread, "read_graph_pajek", cIGraph_unavailable_method, -1);
|
469
|
+
#else
|
456
470
|
rb_define_singleton_method(cIGraph_fileread, "read_graph_edgelist", cIGraph_read_graph_edgelist, 2); /* in cIGraph_file.c */
|
457
471
|
rb_define_singleton_method(cIGraph_fileread, "read_graph_graphml", cIGraph_read_graph_graphml, 2); /* in cIGraph_file.c */
|
458
472
|
rb_define_singleton_method(cIGraph_fileread, "read_graph_ncol", cIGraph_read_graph_ncol, 5); /* in cIGraph_file.c */
|
@@ -461,11 +475,21 @@ void Init_igraph(){
|
|
461
475
|
rb_define_singleton_method(cIGraph_fileread, "read_graph_graphdb", cIGraph_read_graph_graphdb, 2); /* in cIGraph_file.c */
|
462
476
|
rb_define_singleton_method(cIGraph_fileread, "read_graph_gml", cIGraph_read_graph_gml, 1); /* in cIGraph_file.c */
|
463
477
|
rb_define_singleton_method(cIGraph_fileread, "read_graph_pajek", cIGraph_read_graph_pajek, 2); /* in cIGraph_file.c */
|
464
|
-
|
478
|
+
#endif
|
479
|
+
|
465
480
|
/* Functions for writing graphs to files */
|
466
481
|
cIGraph_filewrite = rb_define_module_under(cIGraph, "FileWrite");
|
467
482
|
rb_include_module(cIGraph, cIGraph_filewrite);
|
468
483
|
|
484
|
+
#ifdef __APPLE__
|
485
|
+
rb_define_method(cIGraph_filewrite, "write_graph_edgelist", cIGraph_unavailable_method, -1);
|
486
|
+
rb_define_method(cIGraph_filewrite, "write_graph_graphml", cIGraph_unavailable_method, -1);
|
487
|
+
rb_define_method(cIGraph_filewrite, "write_graph_gml", cIGraph_unavailable_method, -1);
|
488
|
+
rb_define_method(cIGraph_filewrite, "write_graph_ncol", cIGraph_unavailable_method, -1);
|
489
|
+
rb_define_method(cIGraph_filewrite, "write_graph_lgl", cIGraph_unavailable_method, -1);
|
490
|
+
rb_define_method(cIGraph_filewrite, "write_graph_dimacs", cIGraph_unavailable_method, -1);
|
491
|
+
rb_define_method(cIGraph_filewrite, "write_graph_pajek", cIGraph_unavailable_method, -1);
|
492
|
+
#else
|
469
493
|
rb_define_method(cIGraph_filewrite, "write_graph_edgelist", cIGraph_write_graph_edgelist, 1); /* in cIGraph_file.c */
|
470
494
|
rb_define_method(cIGraph_filewrite, "write_graph_graphml", cIGraph_write_graph_graphml, 1); /* in cIGraph_file.c */
|
471
495
|
rb_define_method(cIGraph_filewrite, "write_graph_gml", cIGraph_write_graph_gml, 1); /* in cIGraph_file.c */
|
@@ -473,6 +497,7 @@ void Init_igraph(){
|
|
473
497
|
rb_define_method(cIGraph_filewrite, "write_graph_lgl", cIGraph_write_graph_lgl, 4); /* in cIGraph_file.c */
|
474
498
|
rb_define_method(cIGraph_filewrite, "write_graph_dimacs", cIGraph_write_graph_dimacs, 4); /* in cIGraph_file.c */
|
475
499
|
rb_define_method(cIGraph_filewrite, "write_graph_pajek", cIGraph_write_graph_pajek, 1); /* in cIGraph_file.c */
|
500
|
+
#endif
|
476
501
|
|
477
502
|
/* Graph layout functions */
|
478
503
|
cIGraph_layout = rb_define_module_under(cIGraph, "Layout");
|
@@ -531,7 +556,7 @@ void Init_igraph(){
|
|
531
556
|
rb_define_method(cIGraph_community, "community_eb_get_merges", cIGraph_community_eb_get_merges, 1); /* in cIGraph_community.c */
|
532
557
|
rb_define_method(cIGraph_community, "community_fastgreedy", cIGraph_community_fastgreedy, 0); /* in cIGraph_community.c */
|
533
558
|
|
534
|
-
rb_define_const(cIGraph, "VERSION", rb_str_new2("0.9.
|
559
|
+
rb_define_const(cIGraph, "VERSION", rb_str_new2("0.9.1"));
|
535
560
|
|
536
561
|
rb_define_const(cIGraph, "EDGEORDER_ID", INT2NUM(1));
|
537
562
|
rb_define_const(cIGraph, "EDGEORDER_FROM", INT2NUM(2));
|
data/ext/cIGraph_file.c
CHANGED
@@ -2,6 +2,8 @@
|
|
2
2
|
#include "ruby.h"
|
3
3
|
#include "cIGraph.h"
|
4
4
|
|
5
|
+
#ifdef __APPLE__
|
6
|
+
#else
|
5
7
|
/* call-seq:
|
6
8
|
* IGraph::FileRead.read_graph_edgelist(file,mode) -> IGraph
|
7
9
|
*
|
@@ -842,3 +844,4 @@ VALUE cIGraph_write_graph_pajek(VALUE self, VALUE file){
|
|
842
844
|
return e;
|
843
845
|
|
844
846
|
}
|
847
|
+
#endif
|
data/test/tc_file_read_write.rb
CHANGED
@@ -1,10 +1,18 @@
|
|
1
1
|
require 'test/unit'
|
2
2
|
require 'igraph'
|
3
3
|
require 'stringio'
|
4
|
+
require 'rbconfig'
|
5
|
+
include Config
|
4
6
|
|
5
7
|
class TestGraph < Test::Unit::TestCase
|
6
8
|
def test_edgelist_read
|
7
9
|
g = nil
|
10
|
+
if CONFIG['host'] =~ /apple/
|
11
|
+
assert_raises(NoMethodError){
|
12
|
+
IGraph::FileRead.read_graph_edgelist(StringIO.new("0 1 2 3"),true)
|
13
|
+
}
|
14
|
+
return
|
15
|
+
end
|
8
16
|
assert_nothing_raised{
|
9
17
|
g = IGraph::FileRead.read_graph_edgelist(StringIO.new("0 1 2 3"),true)
|
10
18
|
}
|
@@ -16,6 +24,12 @@ class TestGraph < Test::Unit::TestCase
|
|
16
24
|
def test_edgelist_write
|
17
25
|
g = IGraph.new([0,1,2,3])
|
18
26
|
s = StringIO.new("")
|
27
|
+
if CONFIG['host'] =~ /apple/
|
28
|
+
assert_raises(NoMethodError){
|
29
|
+
g.write_graph_edgelist(s)
|
30
|
+
}
|
31
|
+
return
|
32
|
+
end
|
19
33
|
str = g.write_graph_edgelist(s)
|
20
34
|
s.rewind
|
21
35
|
assert_equal "0 1\n2 3\n", s.read
|
@@ -23,9 +37,16 @@ class TestGraph < Test::Unit::TestCase
|
|
23
37
|
|
24
38
|
def test_ncol_read
|
25
39
|
g = nil
|
40
|
+
if CONFIG['host'] =~ /apple/
|
41
|
+
assert_raises(NoMethodError){
|
42
|
+
IGraph::FileRead.read_graph_ncol(StringIO.new("0 1\n2 3\n"),[],
|
43
|
+
false,false,false)
|
44
|
+
}
|
45
|
+
return
|
46
|
+
end
|
26
47
|
assert_nothing_raised{
|
27
48
|
g = IGraph::FileRead.read_graph_ncol(StringIO.new("0 1\n2 3\n"),[],
|
28
|
-
|
49
|
+
false,false,false)
|
29
50
|
}
|
30
51
|
assert_instance_of IGraph, g
|
31
52
|
assert_equal 4, g.vcount
|
@@ -33,7 +54,7 @@ class TestGraph < Test::Unit::TestCase
|
|
33
54
|
|
34
55
|
assert_nothing_raised{
|
35
56
|
g = IGraph::FileRead.read_graph_ncol(StringIO.new("A B\nC D\n"),[],
|
36
|
-
|
57
|
+
true,false,false)
|
37
58
|
}
|
38
59
|
assert_instance_of IGraph, g
|
39
60
|
assert_equal 4, g.vcount
|
@@ -52,6 +73,12 @@ class TestGraph < Test::Unit::TestCase
|
|
52
73
|
def test_ncol_write
|
53
74
|
g = IGraph.new(["A","B","C","D"],true,[1,2])
|
54
75
|
s = StringIO.new("")
|
76
|
+
if CONFIG['host'] =~ /apple/
|
77
|
+
assert_raises(NoMethodError){
|
78
|
+
g.write_graph_ncol(s,true,true)
|
79
|
+
}
|
80
|
+
return
|
81
|
+
end
|
55
82
|
str = g.write_graph_ncol(s,true,true)
|
56
83
|
s.rewind
|
57
84
|
assert_equal "A B 1.0\nC D 2.0\n", s.read
|
@@ -59,6 +86,12 @@ class TestGraph < Test::Unit::TestCase
|
|
59
86
|
|
60
87
|
def test_lgl_read
|
61
88
|
g = nil
|
89
|
+
if CONFIG['host'] =~ /apple/
|
90
|
+
assert_raises(NoMethodError){
|
91
|
+
IGraph::FileRead.read_graph_lgl(StringIO.new("#A\nB\n#C\nD\n"))
|
92
|
+
}
|
93
|
+
return
|
94
|
+
end
|
62
95
|
assert_nothing_raised{
|
63
96
|
g = IGraph::FileRead.read_graph_lgl(StringIO.new("#A\nB\n#C\nD\n"),
|
64
97
|
false,false)
|
@@ -80,15 +113,27 @@ class TestGraph < Test::Unit::TestCase
|
|
80
113
|
def test_lgl_write
|
81
114
|
g = IGraph.new(["A","B","C","D"],true,[1,2])
|
82
115
|
s = StringIO.new("")
|
116
|
+
if CONFIG['host'] =~ /apple/
|
117
|
+
assert_raises(NoMethodError){
|
118
|
+
g.write_graph_lgl(s,true,true,false)
|
119
|
+
}
|
120
|
+
return
|
121
|
+
end
|
83
122
|
str = g.write_graph_lgl(s,true,true,false)
|
84
123
|
s.rewind
|
85
124
|
assert_equal "# A\nB 1.0\n# C\nD 2.0\n", s.read
|
86
125
|
end
|
87
126
|
|
88
127
|
def test_dimacs_read
|
128
|
+
s = StringIO.new("c com\np min 4 2\nn 1 s\nn 2 t\na 1 2 1\na 3 4 2\n")
|
89
129
|
g = nil
|
130
|
+
if CONFIG['host'] =~ /apple/
|
131
|
+
assert_raises(NoMethodError){
|
132
|
+
IGraph::FileRead.read_graph_dimacs(s,false)
|
133
|
+
}
|
134
|
+
return
|
135
|
+
end
|
90
136
|
assert_nothing_raised{
|
91
|
-
s = StringIO.new("c com\np min 4 2\nn 1 s\nn 2 t\na 1 2 1\na 3 4 2\n")
|
92
137
|
g = IGraph::FileRead.read_graph_dimacs(s,
|
93
138
|
false)
|
94
139
|
}
|
@@ -103,12 +148,24 @@ class TestGraph < Test::Unit::TestCase
|
|
103
148
|
def test_dimacs_write
|
104
149
|
g = IGraph.new(["A","B","C","D"],true,[1,2])
|
105
150
|
s = StringIO.new("")
|
151
|
+
if CONFIG['host'] =~ /apple/
|
152
|
+
assert_raises(NoMethodError){
|
153
|
+
g.write_graph_dimacs(s,0,1,[1,2])
|
154
|
+
}
|
155
|
+
return
|
156
|
+
end
|
106
157
|
str = g.write_graph_dimacs(s,0,1,[1,2])
|
107
158
|
s.rewind
|
108
159
|
assert_equal "c created by igraph\np max 4 2\nn 1 s\nn 2 t\na 1 2 1\na 3 4 2\n", s.read
|
109
160
|
end
|
110
161
|
|
111
162
|
def test_graphml_read
|
163
|
+
if CONFIG['host'] =~ /apple/
|
164
|
+
assert_raises(NoMethodError){
|
165
|
+
IGraph::FileRead.read_graph_graphml(StringIO.new(Graphml),0)
|
166
|
+
}
|
167
|
+
return
|
168
|
+
end
|
112
169
|
g = nil
|
113
170
|
g = IGraph::FileRead.read_graph_graphml(StringIO.new(Graphml),0)
|
114
171
|
assert_instance_of IGraph, g
|
@@ -128,12 +185,24 @@ class TestGraph < Test::Unit::TestCase
|
|
128
185
|
{'eid'=>'e2'}])
|
129
186
|
g.attributes['date'] = 'Friday'
|
130
187
|
s = StringIO.new("")
|
188
|
+
if CONFIG['host'] =~ /apple/
|
189
|
+
assert_raises(NoMethodError){
|
190
|
+
g.write_graph_graphml(s)
|
191
|
+
}
|
192
|
+
return
|
193
|
+
end
|
131
194
|
str = g.write_graph_graphml(s)
|
132
195
|
s.rewind
|
133
196
|
assert_equal Graphml_out, s.read
|
134
197
|
end
|
135
198
|
|
136
199
|
def test_gml_read
|
200
|
+
if CONFIG['host'] =~ /apple/
|
201
|
+
assert_raises(NoMethodError){
|
202
|
+
IGraph::FileRead.read_graph_gml(StringIO.new(Gml))
|
203
|
+
}
|
204
|
+
return
|
205
|
+
end
|
137
206
|
g = IGraph::FileRead.read_graph_gml(StringIO.new(Gml))
|
138
207
|
assert_instance_of IGraph, g
|
139
208
|
end
|
@@ -148,6 +217,12 @@ class TestGraph < Test::Unit::TestCase
|
|
148
217
|
{'eid'=>'e2'}])
|
149
218
|
g.attributes['date'] = 'Friday'
|
150
219
|
s = StringIO.new("")
|
220
|
+
if CONFIG['host'] =~ /apple/
|
221
|
+
assert_raises(NoMethodError){
|
222
|
+
g.write_graph_gml(s)
|
223
|
+
}
|
224
|
+
return
|
225
|
+
end
|
151
226
|
str = g.write_graph_gml(s)
|
152
227
|
s.rewind
|
153
228
|
s = s.read
|
@@ -156,6 +231,12 @@ class TestGraph < Test::Unit::TestCase
|
|
156
231
|
end
|
157
232
|
|
158
233
|
def test_pajek_read_write
|
234
|
+
if CONFIG['host'] =~ /apple/
|
235
|
+
assert_raises(NoMethodError){
|
236
|
+
IGraph::FileRead.read_graph_pajek(StringIO.new(Pajek),0)
|
237
|
+
}
|
238
|
+
return
|
239
|
+
end
|
159
240
|
g = nil
|
160
241
|
g = IGraph::FileRead.read_graph_pajek(StringIO.new(Pajek),0)
|
161
242
|
assert_instance_of IGraph, g
|
data/test/test_all.rb
CHANGED
metadata
CHANGED
@@ -3,8 +3,8 @@ rubygems_version: 0.9.4
|
|
3
3
|
specification_version: 1
|
4
4
|
name: igraph
|
5
5
|
version: !ruby/object:Gem::Version
|
6
|
-
version: 0.9.
|
7
|
-
date: 2007-11-
|
6
|
+
version: 0.9.1
|
7
|
+
date: 2007-11-20 00:00:00 +09:00
|
8
8
|
summary: IGraph is a Ruby extension for interfacing with the C igraph library (http://cneurocvs.rmki.kfki.hu/igraph/). igraph is a library for creating and manipulating graphs with a particular emphasis on network analysis functions.
|
9
9
|
require_paths:
|
10
10
|
- test
|