i2x 0.0.1 → 0.0.3

checksums.yaml

@@ -1,7 +1,7 @@
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data/.gitignore

@@ -0,0 +1,18 @@
+*.gem
+*.rbc
+.bundle
+.config
+coverage
+InstalledFiles
+lib/bundler/man
+pkg
+rdoc
+spec/reports
+test/tmp
+test/version_tmp
+tmp
+
+# YARD artifacts
+.yardoc
+_yardoc
+doc/

data/Gemfile

@@ -0,0 +1,4 @@
+source 'https://rubygems.org'
+
+# Specify your gem's dependencies in i2x.gemspec
+gemspec

data/Gemfile.lock

@@ -0,0 +1,17 @@
+PATH
+  remote: .
+  specs:
+    i2x (0.0.3)
+
+GEM
+  remote: https://rubygems.org/
+  specs:
+    rake (10.1.1)
+
+PLATFORMS
+  ruby
+
+DEPENDENCIES
+  bundler (~> 1.5)
+  i2x!
+  rake

data/LICENSE

@@ -0,0 +1,22 @@
+Copyright (c) 2014 Pedro Lopes
+
+MIT License
+
+Permission is hereby granted, free of charge, to any person obtaining
+a copy of this software and associated documentation files (the
+"Software"), to deal in the Software without restriction, including
+without limitation the rights to use, copy, modify, merge, publish,
+distribute, sublicense, and/or sell copies of the Software, and to
+permit persons to whom the Software is furnished to do so, subject to
+the following conditions:
+
+The above copyright notice and this permission notice shall be
+included in all copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
+EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
+MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
+NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE
+LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION
+OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION
+WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.

data/README.md

@@ -0,0 +1,31 @@
+# I2X
+
+### Automated real-time integration
+
+Ruby gem for distributed client agents.
+
+## Installation
+
+Add this line to your application's Gemfile:
+
+    gem 'i2x'
+
+And then execute:
+
+    $ bundle
+
+Or install it yourself as:
+
+    $ gem install i2x
+
+## Usage
+
+TODO: Write usage instructions here
+
+## Contributing
+
+1. Fork it ( http://github.com/pdrlps/i2x-gem/fork )
+2. Create your feature branch (`git checkout -b my-new-feature`)
+3. Commit your changes (`git commit -am 'Add some feature'`)
+4. Push to the branch (`git push origin my-new-feature`)
+5. Create new Pull Request

data/Rakefile

@@ -0,0 +1,12 @@
+#!/usr/bin/env rake
+require "bundler/gem_tasks"
+ 
+require 'rake/testtask'
+ 
+Rake::TestTask.new do |t|
+  t.libs << 'lib/i2x'
+  t.test_files = FileList['test/lib/i2x/*_test.rb']
+  t.verbose = true
+end
+ 
+task :default => :test

data/i2x.gemspec

@@ -0,0 +1,21 @@
+# coding: utf-8
+lib = File.expand_path('../lib', __FILE__)
+$LOAD_PATH.unshift(lib) unless $LOAD_PATH.include?(lib)
+require 'i2x/version'
+
+Gem::Specification.new do |spec|
+  spec.name          = "i2x"
+  spec.version       = I2X::VERSION
+  spec.authors       = ["Pedro Lopes"]
+  spec.email         = ["hello@pedrolopes.net"]
+  spec.summary       = %q{i2x client library for distributed agents.}
+  spec.description   = %q{i2x: integrate everything. Automated real-time integration framework.}
+  spec.homepage      = "https://bioinformatics.ua.pt/i2x/"
+  spec.license       = "MIT"
+  spec.files         = `git ls-files`.split($/)
+  spec.executables   = spec.files.grep(%r{^bin/}) { |f| File.basename(f) }
+  spec.test_files    = spec.files.grep(%r{^(test|spec|features)/})
+  spec.require_paths = ["lib"]
+  spec.add_development_dependency "bundler", "~> 1.5"
+  spec.add_development_dependency "rake"
+end

data/lib/i2x.rb

@@ -1,5 +1,6 @@
-class I2X
-  def self.hi
-    puts "Hello world!"
-  end
-end
+require_relative "./i2x/version"
+require_relative "./i2x/client"
+
+module I2X
+  
+end

data/lib/i2x/cashier.rb

@@ -0,0 +1,77 @@
+require 'slog'
+
+
+module Services
+  class Cashier
+
+
+    public
+    
+    ##
+    # = Verify
+    # => Verify if items have already been seen in the past (on the cache).
+    #
+    # == Params
+    # - *memory*: the key identifier to be verified
+    # - *payload*: the value for matching/verification
+    # - *agent*: the agent performing the verification
+    # - *seed*: seed data (if available)
+    #
+    def self.verify memory, agent, payload, seed
+      ##
+      # => Redis implementation, use cache.
+      #
+      begin
+        
+        # if Redis is enabled...
+        if ENV["CACHE_REDIS"] then          
+          # give me some cache!
+          @redis = Redis.new :host => ENV["CACHE_HOST"], :port => ENV["CACHE_PORT"]
+        end
+      rescue Exception => e
+        Services::Slog.exception e
+      end
+
+      # the actual verification
+      if ENV["CACHE_REDIS"] then
+        # commented, do not log all cache verifications
+        #Services::Slog.debug({:message => "Verifying cache", :module => "Cashier", :task => "cache", :extra => {:agent => agent[:identifier], :memory => memory, :payload => payload, :seed => seed}})
+        begin          
+          if @redis.hexists("#{agent[:identifier]}:#{seed}","#{memory}") then
+            response = {:status => 200, :message => "[i2x][Cashier] Nothing to update"}
+          else
+            @redis.hset("#{agent[:identifier]}:#{seed}", "#{memory}", payload)
+            response = {:status => 100, :message => "[i2x][Cashier] Memory recorded to cache"}
+          end
+        rescue Exception => e
+          response = {:message => "[i2x][Cashier] unable to verify cache content, #{e}", :status => 301}
+          Services::Slog.exception e     
+        end
+      end
+
+      ##
+      # => SQL implementation, use internal database.
+      #
+      # => To Do: Recheck implementation.
+      #
+      if ENV["CACHE_INTERNAL"] then
+        results = Cache.where memory: memory, agent_id: agent.id, seed: seed
+        if results.size == 0 then
+          begin
+            @cached = Cache.new({:memory => memory, :agent_id => agent.id, :payload => payload, :seed => seed})
+            @cached.save
+            response = {:status => 100, :message => "[i2x][Cashier] Memory recorded to cache"}
+          rescue Exception => e
+            response = {:message => "[i2x][Cashier] unable to save new cache content, #{e}", :status => 300}
+            Services::Slog.exception e
+          end
+        else
+          response = {:status => 200, :message => "[i2x][Cashier] Nothing to update"}
+        end
+
+      end
+
+      response
+    end
+  end
+end

data/lib/i2x/checkup.rb

@@ -0,0 +1,37 @@
+module I2X
+  class Checkup
+
+    ##
+    # = Perform the actual check execution
+    #
+    # + *agent*: the agent to verify
+    #
+    def execute agent
+      begin
+        @response = agent.execute
+      rescue Exception => e
+       
+        @response = {:status => 400, :error => e}
+      end       
+    end
+    
+
+    ##
+    # = Initiate real-time (poll) check
+    #
+    # + *schedule*: the scheduling being checked
+    def check schedule
+      Integration.all.each do |integration|
+        @agents = integration.agents.where( :schedule => schedule).where("last_check_at < CURRENT_TIMESTAMP - INTERVAL 5 MINUTE")
+        @agents.each do |agent|
+          begin
+            self.execute agent
+          rescue Exception => e
+           
+          end
+        end
+      end
+    end
+
+  end
+end

data/lib/i2x/client.rb

@@ -0,0 +1,13 @@
+module I2X
+	class Client
+
+		def initialize config
+			@config = config
+			
+		end
+
+		def ping 
+			p "PONGING #{@config[:server][:host]}"
+		end
+	end
+end

data/lib/i2x/csvdetector.rb

@@ -0,0 +1,53 @@
+require 'helper'
+require 'csv'
+require 'open-uri'
+require 'seedreader'
+require 'csvseedreader'
+require 'sqlseedreader'
+require 'xmlseedreader'
+require 'jsonseedreader'
+
+module I2X
+
+  ##
+  # = CSVDetector
+  #
+  # Detect changes in CSV files (using column numbers).
+  #
+  class CSVDetector < Detector
+
+    public
+    ##
+    # == Detect the changes
+    #
+    def detect object
+      begin
+        CSV.new(open(object[:uri]), :headers => :first_row).each do |row|
+          unless object[:cache].nil? then
+            @cache = Cashier.verify row[object[:cache].to_i], object, row, object[:seed]
+          else
+            @cache = Cashier.verify row[0], object, row, object[:seed]
+          end
+          # The actual processing
+          #
+          if @cache[:status] == 100 then
+
+            # add row data to payload from selectors (key => key, value => column name)
+            payload = Hash.new
+            JSON.parse(object[:selectors]).each do |selector|
+              selector.each do |k,v|
+                payload[k] = row[v.to_i]
+              end
+            end
+            # add payload object to payloads list
+            @payloads.push payload
+          end
+        end
+      rescue Exception => e
+        I2X::Slog.exception e
+      end
+    end
+
+    
+  end
+end

data/lib/i2x/csvseedreader.rb

@@ -0,0 +1,47 @@
+require 'csv'
+
+module I2X
+
+  # = CSVSeedReader
+  #
+  # Load content from CSV seed.
+  #
+  class CSVSeedReader < SeedReader
+    ##
+    # == Read
+    #
+    # => Load the seed data into the @objects array for processing.
+    #
+    def read
+      begin
+        CSV.new(open(@seed[:payload][:uri]), :headers => :first_row).each do |row|
+          begin
+            object = @help.deep_copy @agent[:payload]
+            object.each_pair do |key,value|
+              variables = @help.identify_variables(object[key])
+              variables.each do |v|
+                object[key].gsub!("%{#{v}}", row[@seed[:payload][:selectors][v].to_i])
+              end
+            end
+            
+            unless @seed[:payload][:cache].nil? then
+            	object[:seed] = row[@seed[:payload][:cache].to_i]
+            else
+            	object[:seed] = row[0]
+            end
+
+            
+            object[:identifier] = @agent.identifier
+            @objects.push object
+          rescue Exception => e
+            
+          end
+        end
+      rescue Exception => e
+        
+      end
+
+      @objects
+    end
+  end
+end

data/lib/i2x/detector.rb

@@ -0,0 +1,109 @@
+require 'seedreader'
+require 'csvseedreader'
+require 'sqlseedreader'
+require 'xmlseedreader'
+require 'jsonseedreader'
+
+
+module I2X
+
+  ##
+  # = Detector
+  #
+  # Main change detection class, to be inherited by SQL, CSV, JSON and XML detectors (and others to come).
+  #
+  class Detector
+    attr_accessor :identifier, :agent, :objects, :payloads, :content
+
+    def initialize identifier
+      begin
+        @agent = Agent.find_by! identifier: identifier
+        @payloads = Array.new
+        @objects = Array.new
+        @help = I2X::Helper.new
+      rescue Exception => e
+        
+      end
+    end
+
+
+    ##
+    # == Start original source detection process
+    #
+    def checkup
+      # update checkup time
+      @agent.update_check_at @help.datetime
+
+      begin
+
+        ##
+        # => Process seed data, if available.
+        #
+        if @agent.seeds.size != 0 then
+          @agent.seeds.each do |seed|
+            case seed[:publisher]
+            when 'csv'
+              begin
+                @sr = I2X::CSVSeedReader.new(@agent, seed)
+              rescue Exception => e
+                
+              end
+            when 'sql'
+              begin
+                @sr = I2X::SQLSeedReader.new(@agent, seed)
+              rescue Exception => e
+                
+              end
+            when 'xml'
+              begin
+                @sr = I2X::XMLSeedReader.new(@agent, seed)
+              rescue Exception => e
+                
+              end
+            when 'json'
+              begin
+                @sr = I2X::JSONSeedReader.new(@agent, seed)
+              rescue Exception => e
+
+              end
+            end
+            begin
+              @reads = @sr.read
+              @reads.each do |read|
+                @objects.push read
+              end
+            rescue Exception => e
+              
+            end
+          end
+
+        else
+          ##
+          # no seeds, simply copy agent data
+          object = @help.deep_copy @agent[:payload]
+          object[:identifier] = @agent[:identifier]
+          object[:seed] = object[:identifier]
+          unless self.content.nil? then
+            object[:content] = self.content
+          end
+          @objects.push object
+        end
+      rescue Exception => e
+        @response = {:status => 404, :message => "[i2x][Detector] failed to load doc, #{e}"}
+        I2X::Slog.exception e
+      end
+
+      begin
+        # increase detected events count
+        @agent.increment!(:events_count, @payloads.size)
+        @response = { :payload => @payloads, :status => 100}
+      rescue Exception => e
+        @response = {:status => 404, :message => "[i2x][Detector] failed to process queries, #{e}"}
+        I2X::Slog.exception e
+      end
+      @response
+    end
+    
+
+  end
+end

data/lib/i2x/helper.rb

@@ -0,0 +1,153 @@
+require 'slog'
+
+module I2X
+
+  ##
+  # = Helper Class
+  # => Miscellaneous helper methods and utils to deal with data.
+  #
+  class Helper
+    attr_accessor :replacements
+    @replacements
+
+    def initialize
+      # load each helper function into a map for replacement in the delivery
+      @replacements = [ ["%{i2x.date}", self.date], ["%{i2x.datetime}", self.datetime], ["%{i2x.hostname}", self.hostname]]
+    end
+
+    public
+    def hostname
+      ENV["APP_HOST"]
+    end
+
+    def datetime
+      Time.now.to_s
+    end
+
+    def date
+      Time.now.strftime("%Y-%m-%d").to_s
+    end
+
+    ##
+    # == Identify Variables
+    # => Identifies variables on string set, generates array with all scanned variables for processing.
+    # => Variables are enclosed in %{variable} string.
+    #
+    # * +text+ - string to be scanned
+    #
+    def identify_variables text
+      begin
+        results = Array.new
+        text.scan(/%{(.*?)}/).each do |m|
+          results.push m[0]
+        end
+      rescue Exception => e
+        
+      end
+
+      results
+    end
+
+    ##
+    # == Validate payload
+    # => Validates content payload.
+    #
+    # + *publisher* - for publisher-specific validations
+    # + *payload* - content for validation
+    #
+    def self.validate_payload publisher, payload
+      @database_servers = ["mysql","sqlite","postgresql"]
+      valid = true
+
+      begin
+        case publisher
+        when 'csv', 'xml', 'json', 'file', 'js'
+          # file content URI is mandatory
+          if payload[:uri].nil? then
+            valid = false
+          end
+        when 'sql'
+
+          # check if database server is available
+          unless database_servers.include? payload[:server] then
+            valid = false
+          end
+
+          # database username is mandatory
+          if payload[:username].nil? then
+            valid = false
+          end
+
+          # database user password is mandatory
+          if payload[:password].nil? then
+            valid = false
+          end
+
+          # database name is mandatory
+          if payload[:database].nil? then
+            valid = false
+          end
+
+          # database query is mandatory
+          if payload[:query].nil? then
+            valid = false
+          end
+        end
+      rescue Exception => e
+        
+      end
+      valid
+    end
+
+    ##
+    # == Validate Seed
+    # => Validates Seed-specific properties
+    #
+    # + *publisher* - for publisher-specific validations
+    # + *seed* - the seed hash
+    #
+    def self.validate_seed publisher, seed
+      begin
+        valid = self.validate_payload publisher, seed
+        if valid then
+          # seed must have selectors
+          if seed[:selectors].nil? then
+            valid = false
+          end
+        else
+          valid = false
+        end
+      rescue Exception => e
+        
+      end
+
+      valid
+    end
+
+    ##
+    # == Validate Agent
+    # => Validates Agent-specific properties
+    #
+    # + *agent* - the agent for validation
+    #
+    def self.validate_agent
+      begin
+        valid = self.validate_seed(agent[:publisher], agent[:payload]) && self.validate_payload(agent[:publisher], agent[:payload])
+      rescue Exception => e
+        
+      end
+
+      valid
+    end
+
+    ##
+    # == Copy Object/Hash/Array...
+    # => Copies any object into new object (overcome references).
+    #
+    # + *o* - the object being copied
+    #
+    def deep_copy object
+      Marshal.load(Marshal.dump(object))
+    end
+  end
+end

data/lib/i2x/jsondetector.rb

@@ -0,0 +1,64 @@
+require 'helper'
+require 'open-uri'
+require 'jsonpath'
+require 'rest-client'
+require 'csv'
+require 'json'
+require 'seedreader'
+require 'csvseedreader'
+require 'sqlseedreader'
+require 'xmlseedreader'
+require 'jsonseedreader'
+
+module I2X
+
+  # = JSONDetector
+  #
+  # Detect changes in JSON content files (uses JSONPath).
+  #
+  class JSONDetector < Detector
+
+    public
+
+    ##
+    # == Detect the changes
+    #
+    def detect object
+      begin
+        if object[:uri] == '' then
+          @doc = object[:content]
+        else
+          url = RestClient.get object[:uri]
+          @doc = url.to_str
+        end
+        JsonPath.on(@doc,object[:query]).each do |element|
+          JsonPath.on(element, object[:cache]).each do |c|
+            @cache = Cashier.verify c, object, c, object[:seed]
+          end
+
+          ##
+          # If not on cache, add to payload for processing
+          #
+          if @cache[:status] == 100 then
+
+            # add row data to payload from selectors (key => key, value => column name)
+            payload = Hash.new
+            JSON.parse(object[:selectors]).each do |selector|
+              selector.each do |k,v|
+                JsonPath.on(element, v).each do |el|
+                  payload[k] = el
+                end
+              end
+            end
+            # add payload object to payloads list
+            @payloads.push payload
+          end
+
+        end
+      rescue Exception => e
+        
+      end
+
+    end
+  end
+end

data/lib/i2x/jsonseedreader.rb

@@ -0,0 +1,52 @@
+require 'json'
+
+module I2X
+
+  # = JSONSeedReader
+  #
+  # Load content from JSON seed.
+  #
+  class JSONSeedReader < SeedReader
+    ##
+    # == Read
+    #
+    # => Load the seed data into the @objects array for processing.
+    #
+    def read
+      begin
+        url = RestClient.get @seed[:payload][:uri]
+        @doc = url.to_str
+        JsonPath.on(@doc,@seed[:payload][:query]).each do |element|
+
+          begin
+            object = @help.deep_copy @agent[:payload]
+            object.each_pair do |key,value|
+              variables = @help.identify_variables(object[key])
+              variables.each do |v|
+
+                JsonPath.on(element, @seed[:payload][:selectors][v]).each do |el|
+                
+                  object[key].gsub!("%{#{v}}", el.to_s)
+                end
+              end
+            end
+
+            JsonPath.on(element,@seed[:payload][:cache]).each do |el|
+              object[:seed] = el
+
+            end
+
+            object[:identifier] = @agent.identifier
+            @objects.push object
+          rescue Exception => e
+            
+          end
+        end
+      rescue Exception => e
+        
+      end
+
+      @objects
+    end
+  end
+end

data/lib/i2x/seedreader.rb

@@ -0,0 +1,21 @@
+require 'helper'
+
+module I2X
+
+  ##
+  # = Seed Reader
+  #
+  # Main seed reading class, passing data for seeds to agent, to be inherited by SQL, File and URL templates
+  #
+  class SeedReader
+  	 attr_accessor :seed, :objects, :agent
+
+  	 def initialize agent, seed
+  	 	@agent = agent
+  	 	@help = I2X::Helper.new
+  	 	@seed = seed
+  	 	@objects = Array.new
+  	 	puts "\t\tSeed: #{@seed[:identifier]}"
+  	 end
+  end
+end

data/lib/i2x/sqldetector.rb

@@ -0,0 +1,48 @@
+require 'helper'
+require 'mysql2'
+
+module I2X
+
+  ##
+  # = SQLDetector
+  #
+  # Detec changes in SQL databases. MySQL support only.
+  #
+  class SQLDetector < Detector
+
+    public
+    ##
+    # == Detect the changes
+    #
+    def detect object
+      puts "Detecting SQL to #{object[:identifier]}"
+      begin
+        @client = Mysql2::Client.new(:host => object[:host], :username => object[:username] , :password => object[:password] , :database => object[:database])
+        @client.query(@agent[:payload][:query]).each(:symbolize_keys => false) do |row|
+          unless object[:cache].nil? then
+            @cache = Cashier.verify row[object[:cache]], object, row, object[:seed]
+          else
+            @cache = Cashier.verify row["id"], object, row, object[:seed]
+          end
+
+          # The actual processing
+          #
+          if @cache[:status] == 100 then
+
+            # add row data to payload from selectors (key => key, value => column name)
+            payload = Hash.new
+            JSON.parse(object[:selectors]).each do |selector|
+              selector.each do |k,v|
+                payload[k] = row[v]
+              end
+            end
+            # add payload object to payloads list
+            @payloads.push payload
+          end
+        end
+      rescue Exception => e
+        
+      end
+    end
+  end
+end

data/lib/i2x/sqlseedreader.rb

@@ -0,0 +1,47 @@
+require 'slog'
+require 'mysql2'
+
+module Services
+
+  # = SQLSeedReader
+  #
+  # Load content from SQL seed.
+  #
+  class SQLSeedReader < SeedReader
+    ##
+    # == Read
+    #
+    # => Load the seed data into the @objects array for processing.
+    #
+    def read
+      begin
+        @client = Mysql2::Client.new(:host => @seed[:payload][:host], :username => @seed[:payload][:username] , :password => @seed[:payload][:password] , :database => @seed[:payload][:database])
+        @client.query(@seed[:payload][:query], :cast => false).each(:symbolize_keys => false) do |row|          
+          begin
+          	object = @help.deep_copy @agent[:payload]
+            object.each_pair do |key,value|
+              variables = @help.identify_variables(object[key])
+              variables.each do |v|
+                object[key].gsub!("%{#{v}}", row[@seed[:payload][:selectors][v]].to_str)
+              end
+            end
+       
+            unless @seed[:payload][:cache].nil? then
+              object[:seed] = row[@seed[:payload][:cache]]
+            else
+              object[:seed] = row["id"]
+            end
+            object[:identifier] = @agent.identifier
+            @objects.push object
+          rescue Exception => e
+
+          end
+        end
+      rescue Exception => e
+        
+      end
+      
+      @objects
+    end
+  end
+end

data/lib/i2x/version.rb

@@ -0,0 +1,3 @@
+module I2X
+  VERSION = "0.0.3"
+end

data/lib/i2x/xmldetector.rb

@@ -0,0 +1,57 @@
+require 'helper'
+require 'cashier'
+require 'open-uri'
+require 'raven'
+require 'slog'
+
+module I2X
+
+  # = XMLDetector
+  #
+  # Detect changes in XML files (uses XPath).
+  #
+  class XMLDetector < Detector
+
+    public
+    ##
+    # == Detect the changes
+    #
+    def detect object
+      begin
+        if object[:uri] == '' then
+          @doc = Nokogiri::XML(object[:content])
+        else
+          @doc = Nokogiri::XML(open(object[:uri]))
+        end
+        @doc.remove_namespaces!
+        @doc.xpath(object[:query]).each do |element|
+          element.xpath(object[:cache]).each do |c|
+            @cache = Cashier.verify c.content, object, c.content, object[:seed]
+          end
+
+          ##
+          # If not on cache, add to payload for processing
+          #
+          if @cache[:status] == 100 then
+
+            # add row data to payload from selectors (key => key, value => column name)
+            payload = Hash.new
+            JSON.parse(object[:selectors]).each do |selector|
+
+              selector.each do |k,v|
+                element.xpath(v).each do |el|
+                  payload[k] = el.content
+                end
+              end
+            end
+            # add payload object to payloads list
+            @payloads.push payload
+
+          end
+        end
+      end
+    rescue Exception => e
+      
+    end
+  end
+end

data/lib/i2x/xmlseedreader.rb

@@ -0,0 +1,52 @@
+module I2X
+
+  # = XMLSeedReader
+  #
+  # Load content from XML seed.
+  #
+  class XMLSeedReader < SeedReader
+    ##
+    # == Read
+    #
+    # => Load the seed data into the @objects array for processing.
+    #
+    def read
+      begin
+        @doc = Nokogiri::XML(open(@seed[:payload][:uri]))
+        @doc.remove_namespaces!
+        @doc.xpath(@seed[:payload][:query]).each do |element|
+          begin
+            object = @help.deep_copy @agent[:payload]
+            object.each_pair do |key,value|
+              variables = @help.identify_variables(object[key])
+              variables.each do |v|
+                element.xpath(@seed[:payload][:selectors][v]).each do |el|
+                  object[key].gsub!("%{#{v}}", el.content)
+                end
+              end
+            end
+
+            unless @seed[:payload][:cache].nil? then
+              element.xpath(@seed[:payload][:cache]).each do |el|
+                object[:seed] = el.content
+              end
+            else
+              element.xpath('id').each do |el|
+                object[:seed] = el.content
+              end
+            end
+
+            object[:identifier] = @agent.identifier
+            @objects.push object
+          rescue Exception => e
+            
+          end
+        end
+      rescue Exception => e
+        
+      end
+
+      @objects
+    end
+  end
+end

data/test/lib/i2x/version_test.rb

@@ -0,0 +1,9 @@
+require_relative '../../test_helper'
+ 
+describe I2X do
+ 
+  it "must be defined" do
+    I2X::VERSION.wont_be_nil
+  end
+ 
+end

data/test/test_helper.rb

@@ -0,0 +1,4 @@
+require 'minitest/autorun'
+require 'minitest/pride'
+
+require File.expand_path('../../lib/i2x.rb', __FILE__)

metadata

@@ -1,23 +1,76 @@
 --- !ruby/object:Gem::Specification
 name: i2x
 version: !ruby/object:Gem::Version
-  version: 0.0.1
+  version: 0.0.3
 platform: ruby
 authors:
 - Pedro Lopes
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2014-01-16 00:00:00.000000000 Z
-dependencies: []
-description: 'i2x: integrate everything'
-email: hello@pedrolopes.net
+date: 2014-01-20 00:00:00.000000000 Z
+dependencies:
+- !ruby/object:Gem::Dependency
+  name: bundler
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '1.5'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '1.5'
+- !ruby/object:Gem::Dependency
+  name: rake
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - ">="
+      - !ruby/object:Gem::Version
+        version: '0'
+description: 'i2x: integrate everything. Automated real-time integration framework.'
+email:
+- hello@pedrolopes.net
 executables: []
 extensions: []
 extra_rdoc_files: []
 files:
+- ".gitignore"
+- Gemfile
+- Gemfile.lock
+- LICENSE
+- README.md
+- Rakefile
+- i2x.gemspec
 - lib/i2x.rb
-homepage: http://rubygems.org/gems/i2x
+- lib/i2x/cashier.rb
+- lib/i2x/checkup.rb
+- lib/i2x/client.rb
+- lib/i2x/csvdetector.rb
+- lib/i2x/csvseedreader.rb
+- lib/i2x/detector.rb
+- lib/i2x/helper.rb
+- lib/i2x/jsondetector.rb
+- lib/i2x/jsonseedreader.rb
+- lib/i2x/seedreader.rb
+- lib/i2x/sqldetector.rb
+- lib/i2x/sqlseedreader.rb
+- lib/i2x/version.rb
+- lib/i2x/xmldetector.rb
+- lib/i2x/xmlseedreader.rb
+- test/lib/i2x/version_test.rb
+- test/test_helper.rb
+homepage: https://bioinformatics.ua.pt/i2x/
 licenses:
 - MIT
 metadata: {}
@@ -40,5 +93,7 @@ rubyforge_project:
 rubygems_version: 2.2.0
 signing_key: 
 specification_version: 4
-summary: 'i2x: automated real-time integration'
-test_files: []
+summary: i2x client library for distributed agents.
+test_files:
+- test/lib/i2x/version_test.rb
+- test/test_helper.rb