health_stats 0.0.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
data/LICENSE ADDED
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+ Copyright (c) 2009 Mark Martin
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+
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+ Permission is hereby granted, free of charge, to any person obtaining
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+ a copy of this software and associated documentation files (the
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+ "Software"), to deal in the Software without restriction, including
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+ without limitation the rights to use, copy, modify, merge, publish,
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+ distribute, sublicense, and/or sell copies of the Software, and to
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+ permit persons to whom the Software is furnished to do so, subject to
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+ the following conditions:
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+
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+ The above copyright notice and this permission notice shall be
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+ included in all copies or substantial portions of the Software.
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+
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+ THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
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+ EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
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+ MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
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+ NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE
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+ LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION
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+ OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION
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+ WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
data/README.md ADDED
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data/Rakefile ADDED
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+ require 'rubygems'
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+ require 'rake'
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+
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+ begin
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+ require 'jeweler'
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+ Jeweler::Tasks.new do |gemspec|
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+ gemspec.name = "health_stats"
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+ gemspec.summary = "Convenience methods for age, bmi, bmi percentile"
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+ gemspec.email = "assplecake@gmail.com"
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+ gemspec.homepage = "http://github.com/assplecake/healthdata"
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+ gemspec.authors = ["Mark Martin"]
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+
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+ gemspec.add_development_dependency('activesupport', '>= 2.3')
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+ end
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+
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+ Jeweler::GemcutterTasks.new
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+
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+ rescue LoadError
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+ puts "Jeweler not available. Install it with: sudo gem install jeweler"
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+ end
data/VERSION ADDED
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+ 0.0.1
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+ # Generated by jeweler
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+ # DO NOT EDIT THIS FILE DIRECTLY
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+ # Instead, edit Jeweler::Tasks in Rakefile, and run the gemspec command
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+ # -*- encoding: utf-8 -*-
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+
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+ Gem::Specification.new do |s|
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+ s.name = %q{health_stats}
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+ s.version = "0.0.1"
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+
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+ s.required_rubygems_version = Gem::Requirement.new(">= 0") if s.respond_to? :required_rubygems_version=
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+ s.authors = ["Mark Martin"]
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+ s.date = %q{2009-12-03}
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+ s.email = %q{assplecake@gmail.com}
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+ s.extra_rdoc_files = [
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+ "LICENSE",
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+ "README.md"
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+ ]
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+ s.files = [
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+ "LICENSE",
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+ "README.md",
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+ "Rakefile",
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+ "VERSION",
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+ "health_stats.gemspec",
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+ "lib/health_stats.rb",
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+ "lib/health_stats/age.rb",
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+ "lib/health_stats/bmi.rb",
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+ "lib/health_stats/cdc_data.rb",
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+ "lib/health_stats/cdc_data/bmi.rb",
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+ "lib/health_stats/statistics.rb",
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+ "pkg/health_stats-0.0.1.gem",
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+ "spec/spec_health_stats.rb"
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+ ]
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+ s.homepage = %q{http://github.com/assplecake/healthdata}
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+ s.rdoc_options = ["--charset=UTF-8"]
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+ s.require_paths = ["lib"]
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+ s.rubygems_version = %q{1.3.5}
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+ s.summary = %q{Convenience methods for age, bmi, bmi percentile}
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+ s.test_files = [
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+ "spec/spec_health_stats.rb"
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+ ]
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+
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+ if s.respond_to? :specification_version then
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+ current_version = Gem::Specification::CURRENT_SPECIFICATION_VERSION
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+ s.specification_version = 3
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+
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+ if Gem::Version.new(Gem::RubyGemsVersion) >= Gem::Version.new('1.2.0') then
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+ s.add_development_dependency(%q<activesupport>, [">= 2.3"])
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+ else
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+ s.add_dependency(%q<activesupport>, [">= 2.3"])
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+ end
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+ else
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+ s.add_dependency(%q<activesupport>, [">= 2.3"])
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+ end
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+ end
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+
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+ module HealthStats
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+ AttributeError = Class.new(StandardError)
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+ RequiredAttributes = [:dob, :weight, :height, :gender]
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+
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+ RequiredAttributes.each do |attribute|
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+ define_method(attribute) do
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+ message = "#{attribute} is not implemented"
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+ raise HealthStats::AttributeError, message
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+ end
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+ end
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+ end
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+
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+ require 'health_stats/age'
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+ require 'health_stats/statistics'
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+ require 'health_stats/bmi'
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+ module HealthStats
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+ module Age
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+ def age_in_months
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+ return if dob.nil?
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+ today = Date.today
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+ months = age_in_years * 12
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+
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+ if today.month > dob.month
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+ months += (today.month - dob.month)
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+ else
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+ months += today.month
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+ end
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+
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+ if today.day >= dob.day
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+ months += 1 + (today.day - dob.day > 15 ? 0.5 : 0.0)
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+ else
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+ months += (today.day - dob.day + 30) > 15 ? -0.5 : -1.0
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+ end
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+ end
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+
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+ def age_in_years
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+ return if dob.nil?
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+ today = Date.today
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+
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+ if today.month > dob.month || (today.month == dob.month && today.day >= dob.day)
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+ today.year - dob.year
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+ else
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+ today.year - dob.year - 1
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+ end
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+ end
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+ alias_method :age, :age_in_years
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+ end
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+
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+ include Age
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+ end
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+ module HealthStats
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+ autoload :CDCData, File.dirname(__FILE__) + '/cdc_data'
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+
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+ module BMI
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+ include Statistics
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+
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+ def bmi
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+ if weight && height
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+ (((weight * 703) * 100) / (height ** 2)) / 100.0
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+ end
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+ end
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+
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+ def bmi_percentile
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+ bmi_score = bmi
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+ month_age = age_in_months
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+ lms_value = nil
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+
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+ return unless bmi_score && month_age && gender
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+ return if month_age < 24.0 || month_age > 241.0
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+
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+ chart = gender == 'f' ? CDCData::BMI::Female : CDCData::BMI::Male
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+
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+ while lms_value.nil?
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+ lms_value = chart[month_age]
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+ month_age -= 0.5
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+ end
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+
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+ # I feel dirty.
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+ ((poz(lms(bmi_score, *lms_value)) * 1000000).to_i / 100.0).round / 100.0
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+ end
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+ end
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+
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+ include BMI
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+ end
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+ module HealthStats
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+ module CDCData
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+ module BMI
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+ autoload :Male, File.dirname(__FILE__) + '/cdc_data/bmi'
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+ autoload :Female, File.dirname(__FILE__) + '/cdc_data/bmi'
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+ end
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+ end
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+ end
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+ module HealthStats
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+ module CDCData
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+ module BMI
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+ Male = {
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+ 24.0 => [-2.01118107, 16.575027675, 0.080592465],
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+ 24.5 => [-1.982373595, 16.547774867, 0.0801274288],
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+ 25.5 => [-1.924100169, 16.494427632, 0.0792339937],
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+ 26.5 => [-1.86549793, 16.442595522, 0.0783893561],
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+ 27.5 => [-1.807261899, 16.392243398, 0.0775935012],
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+ 28.5 => [-1.750118905, 16.343336543, 0.0768464622],
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+ 29.5 => [-1.69481584, 16.295840971, 0.0761483079],
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+ 30.5 => [-1.642106779, 16.249723714, 0.0754991255],
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+ 31.5 => [-1.592744414, 16.204952678, 0.0748989935],
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+ 32.5 => [-1.547442391, 16.161498714, 0.0743479966],
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+ 33.5 => [-1.506902601, 16.119332582, 0.0738461386],
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+ 34.5 => [-1.471770047, 16.078427579, 0.0733933698],
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+ 35.5 => [-1.442628957, 16.038758958, 0.0729895508],
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+ 36.5 => [-1.419991255, 16.000304012, 0.0726344323],
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+ 37.5 => [-1.404277619, 15.963042771, 0.072327649],
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+ 38.5 => [-1.39586317, 15.926954175, 0.0720686401],
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+ 39.5 => [-1.394935252, 15.892025816, 0.0718568052],
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+ 40.5 => [-1.401671596, 15.858240929, 0.071691278],
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+ 41.5 => [-1.416100312, 15.825588223, 0.0715710933],
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+ 42.5 => [-1.438164899, 15.794057282, 0.0714951131],
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+ 43.5 => [-1.467669032, 15.763642549, 0.0714621062],
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+ 44.5 => [-1.504376347, 15.734336684, 0.0714706462],
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429
+ 225.5 => [-2.34768, 21.491335286, 0.1481206332],
430
+ 226.5 => [-2.350773286, 21.511879176, 0.1483016185],
431
+ 227.5 => [-2.353444725, 21.531709894, 0.1485023554],
432
+ 228.5 => [-2.355677743, 21.550821547, 0.1487235462],
433
+ 229.5 => [-2.35745607, 21.569208237, 0.1489659018],
434
+ 230.5 => [-2.358763788, 21.586864057, 0.1492301415],
435
+ 231.5 => [-2.359585369, 21.603783087, 0.1495169936],
436
+ 232.5 => [-2.359905726, 21.619959388, 0.1498271951],
437
+ 233.5 => [-2.359710258, 21.635387002, 0.1501614923],
438
+ 234.5 => [-2.358980464, 21.650061262, 0.150520734],
439
+ 235.5 => [-2.357714508, 21.663972695, 0.1509054394],
440
+ 236.5 => [-2.355892424, 21.677117355, 0.1513165313],
441
+ 237.5 => [-2.353501353, 21.689489352, 0.1517548077],
442
+ 238.5 => [-2.350528726, 21.701082884, 0.1522210861],
443
+ 239.5 => [-2.346962247, 21.711892252, 0.1527162055],
444
+ 240.0 => [-2.34495843, 21.716999342, 0.152974718],
445
+ 240.5 => [-2.342796948, 21.721909734, 0.1532408716]
446
+ }
447
+ end
448
+ end
449
+ end
@@ -0,0 +1,97 @@
1
+ # The following were adapted from
2
+ # http://www.fourmilab.ch/rpkp/experiments/analysis/zCalc.html?
3
+ # Original comments below:
4
+ #
5
+ # The following functions for calculating normal and
6
+ # chi-square probabilities and critical values were adapted by
7
+ # John Walker from C implementations
8
+ # written by Gary Perlman of Wang Institute, Tyngsboro, MA
9
+ # 01879. Both the original C code and this edition
10
+ # are in the public domain. */
11
+ #
12
+ # POZ -- probability of normal z value
13
+ #
14
+ # Adapted from a polynomial approximation in:
15
+ # Ibbetson D, Algorithm 209
16
+ # Collected Algorithms of the CACM 1963 p. 616
17
+ # Note:
18
+ # This routine has six digit accuracy, so it is only useful for absolute
19
+ # z values <= 6. For z values > to 6.0, poz() returns 0.0.
20
+ #
21
+ module HealthStats
22
+ module Statistics
23
+ extend self
24
+
25
+ Z_MAX = 6
26
+ Z_EPSILON = 0.000001
27
+
28
+ def poz(z)
29
+ if z == 0.0
30
+ x = 0.0
31
+ else
32
+ y = 0.5 * z.abs
33
+
34
+ if y > (Z_MAX * 0.5)
35
+ x = 1.0
36
+ elsif y < 1.0
37
+ w = y ** 2
38
+ x = ((((((((0.000124818987 * w -
39
+ 0.001075204047) * w + 0.005198775019) * w -
40
+ 0.019198292004) * w + 0.059054035642) * w -
41
+ 0.151968751364) * w + 0.319152932694) * w -
42
+ 0.531923007300) * w + 0.797884560593) * y * 2.0
43
+ else
44
+ y -= 2.0
45
+ x = (((((((((((((-0.000045255659 * y +
46
+ 0.000152529290) * y - 0.000019538132) * y -
47
+ 0.000676904986) * y + 0.001390604284) * y -
48
+ 0.000794620820) * y - 0.002034254874) * y +
49
+ 0.006549791214) * y - 0.010557625006) * y +
50
+ 0.011630447319) * y - 0.009279453341) * y +
51
+ 0.005353579108) * y - 0.002141268741) * y +
52
+ 0.000535310849) * y + 0.999936657524
53
+ end
54
+ end
55
+
56
+ z > 0.0 ? ((x + 1.0) * 0.5) : ((1.0 - x) * 0.5)
57
+ end
58
+
59
+ def critz(p)
60
+ minz = -Z_MAX
61
+ maxz = Z_MAX
62
+ zval = 0.0
63
+
64
+ return -1 if p < 0.0 || p > 1.0
65
+
66
+ while maxz - minz > Z_EPSILON
67
+ pval = poz(zval)
68
+
69
+ if pval > p
70
+ maxz = zval
71
+ else
72
+ minz = zval
73
+ end
74
+
75
+ zval = (maxz + minz) * 0.5
76
+ end
77
+
78
+ zval
79
+ end
80
+
81
+ # LMS method
82
+ # Box GE, Cox DR. An analysis of transformations. J Roy Stat Soc, Series
83
+ # B. 26:211-252, 1964.
84
+ # Cole TJ. The LMS method for constructing normalized growth standards.
85
+ # Eur J Clin Nutr. 44: 45-60, 1990
86
+ # Cole TJ. Fitting smoothed centile curves to reference data.
87
+ # Royal Stat Soc. 151:385-418, 1988
88
+
89
+ def lms(x, l, m, s)
90
+ (((x / m) ** l) - 1) / (l * s)
91
+ end
92
+
93
+ # puts poz(lms(17.08, -1.924100169, 16.494427632, 0.0792339937)) * 100
94
+ end
95
+ end
96
+ # puts critz(0.85)
97
+ #
Binary file
@@ -0,0 +1,119 @@
1
+ $:.unshift File.expand_path(File.dirname(__FILE__) + '/../lib')
2
+ require 'health_stats'
3
+ require 'activesupport'
4
+
5
+ REQUIRED_ATTRIBUTES = [:height, :weight, :gender, :dob]
6
+
7
+ describe 'HealthStats' do
8
+ describe 'required attributes' do
9
+ before do
10
+ @klass = Class.new do
11
+ include HealthStats
12
+ end
13
+ end
14
+
15
+ REQUIRED_ATTRIBUTES.each do |attribute|
16
+ it "should include #{attribute}" do
17
+ person = @klass.new
18
+ lambda { person.send(attribute) }.should.raise(HealthStats::AttributeError)
19
+ end
20
+ end
21
+ end
22
+
23
+ describe 'included methods' do
24
+ before do
25
+ @klass = Class.new do
26
+ include HealthStats
27
+ attr_accessor *REQUIRED_ATTRIBUTES
28
+ end
29
+
30
+ @person = @klass.new
31
+ @person.height = 53
32
+ @person.weight = 100
33
+ @person.gender = 'f'
34
+ @person.dob = 14.years.ago - 5.days
35
+ end
36
+
37
+ describe '#age_methods' do
38
+ it "should return nil if dob is nil" do
39
+ @person.dob = nil
40
+ @person.age.should.be.nil
41
+ @person.age_in_years.should.be.nil
42
+ @person.age_in_months.should.be.nil
43
+ end
44
+
45
+ it "should return years as integer" do
46
+ @person.age_in_years.should == 14
47
+ @person.age.should == 14
48
+
49
+ @person.dob = 1.month.ago
50
+ @person.age_in_years.should == 0
51
+ @person.age.should == 0
52
+
53
+ @person.dob = 14.months.ago
54
+ @person.age_in_years.should == 1
55
+ @person.age.should == 1
56
+ end
57
+
58
+ it "should include age in months as a float in .5 increments" do
59
+ @person.age_in_months.should == 168.0
60
+
61
+ @person.dob = 1.month.ago + 2.days
62
+ @person.age_in_months.should == 0.5
63
+
64
+ @person.dob = 1.month.ago - 3.days
65
+ @person.age_in_months.should == 1.0
66
+
67
+ @person.dob = 1.year.ago - 5.days
68
+ @person.age_in_months.should == 12.0
69
+
70
+ @person.dob = 1.year.ago + 5.days
71
+ @person.age_in_months.should == 11.5
72
+
73
+ @person.dob = 2.years.ago - 1.month - 18.days
74
+ @person.age_in_months.should. == 25.5
75
+ end
76
+
77
+ end
78
+
79
+ describe '#bmi' do
80
+ [:height, :weight].each do |attribute|
81
+ it "should return nil if #{attribute} is nil" do
82
+ @person.send("#{attribute}=", nil)
83
+ @person.bmi.should.be.nil
84
+ end
85
+ end
86
+
87
+ it 'should return the correct bmi (precision 2)' do
88
+ @person.bmi.should == 25.02
89
+ end
90
+ end
91
+
92
+ describe '#bmi_percentile' do
93
+ [:dob, :gender].each do |attribute|
94
+ it "should return nil if #{attribute} is nil" do
95
+ @person.send("#{attribute}=", nil)
96
+ @person.bmi_percentile.should.be.nil
97
+ end
98
+ end
99
+
100
+ it "should return nil if outside cdc date range" do
101
+ @person.dob = 1.month.ago
102
+ @person.bmi_percentile.should.be.nil
103
+
104
+ @person.dob == 20.years.ago - 10.days - 2.months
105
+ @person.bmi_percentile.should.be.nil
106
+ end
107
+
108
+ it "should return percentile (precision 2)" do
109
+ @person.bmi_percentile.should == 91.02
110
+
111
+ @person.gender = 'm'
112
+ @person.dob = 2.years.ago - 1.month - 18.days
113
+ @person.weight = 14
114
+ @person.height = 24
115
+ @person.bmi_percentile.should == 66.49
116
+ end
117
+ end
118
+ end
119
+ end
metadata ADDED
@@ -0,0 +1,77 @@
1
+ --- !ruby/object:Gem::Specification
2
+ name: health_stats
3
+ version: !ruby/object:Gem::Version
4
+ version: 0.0.1
5
+ platform: ruby
6
+ authors:
7
+ - Mark Martin
8
+ autorequire:
9
+ bindir: bin
10
+ cert_chain: []
11
+
12
+ date: 2009-12-03 00:00:00 -08:00
13
+ default_executable:
14
+ dependencies:
15
+ - !ruby/object:Gem::Dependency
16
+ name: activesupport
17
+ type: :development
18
+ version_requirement:
19
+ version_requirements: !ruby/object:Gem::Requirement
20
+ requirements:
21
+ - - ">="
22
+ - !ruby/object:Gem::Version
23
+ version: "2.3"
24
+ version:
25
+ description:
26
+ email: assplecake@gmail.com
27
+ executables: []
28
+
29
+ extensions: []
30
+
31
+ extra_rdoc_files:
32
+ - LICENSE
33
+ - README.md
34
+ files:
35
+ - LICENSE
36
+ - README.md
37
+ - Rakefile
38
+ - VERSION
39
+ - health_stats.gemspec
40
+ - lib/health_stats.rb
41
+ - lib/health_stats/age.rb
42
+ - lib/health_stats/bmi.rb
43
+ - lib/health_stats/cdc_data.rb
44
+ - lib/health_stats/cdc_data/bmi.rb
45
+ - lib/health_stats/statistics.rb
46
+ - pkg/health_stats-0.0.1.gem
47
+ - spec/spec_health_stats.rb
48
+ has_rdoc: true
49
+ homepage: http://github.com/assplecake/healthdata
50
+ licenses: []
51
+
52
+ post_install_message:
53
+ rdoc_options:
54
+ - --charset=UTF-8
55
+ require_paths:
56
+ - lib
57
+ required_ruby_version: !ruby/object:Gem::Requirement
58
+ requirements:
59
+ - - ">="
60
+ - !ruby/object:Gem::Version
61
+ version: "0"
62
+ version:
63
+ required_rubygems_version: !ruby/object:Gem::Requirement
64
+ requirements:
65
+ - - ">="
66
+ - !ruby/object:Gem::Version
67
+ version: "0"
68
+ version:
69
+ requirements: []
70
+
71
+ rubyforge_project:
72
+ rubygems_version: 1.3.5
73
+ signing_key:
74
+ specification_version: 3
75
+ summary: Convenience methods for age, bmi, bmi percentile
76
+ test_files:
77
+ - spec/spec_health_stats.rb