gs2crmod 0.11.51 → 0.11.53

data/Gemfile

@@ -9,8 +9,10 @@ source "http://rubygems.org"
 # Add dependencies to develop your gem here.
 # Include everything needed to run rake, tests, features, etc.
 group :development do
-  gem "shoulda", ">= 0"
+  gem "shoulda", " 3.0.1"
   gem "rdoc", "~> 3.12"
   gem "bundler", "> 1.0.0"
   gem "jeweler", ">= 1.8.4"
+	gem "minitest", "~> 4"
+	#gem "rake-compiler"
 end

data/Rakefile

@@ -24,6 +24,7 @@ Jeweler::Tasks.new do |gem|
 	gem.extensions = "ext/extconf.rb"
 	gem.files.include('ext/*.c', 'include/*.h', 'ext/*.rb')
 	gem.required_ruby_version = '>= 1.9.1'
+	gem.files.exclude 'test/**/*'
   # dependencies defined in Gemfile
 end
 Jeweler::RubygemsDotOrgTasks.new

data/VERSION

@@ -1 +1 @@
-0.11.51
+0.11.53

data/gs2crmod.gemspec

@@ -2,17 +2,14 @@
 # DO NOT EDIT THIS FILE DIRECTLY
 # Instead, edit Jeweler::Tasks in Rakefile, and run 'rake gemspec'
 # -*- encoding: utf-8 -*-
-# stub: gs2crmod 0.11.51 ruby lib
-# stub: ext/extconf.rb
 
 Gem::Specification.new do |s|
   s.name = "gs2crmod"
-  s.version = "0.11.51"
+  s.version = "0.11.53"
 
   s.required_rubygems_version = Gem::Requirement.new(">= 0") if s.respond_to? :required_rubygems_version=
-  s.require_paths = ["lib"]
   s.authors = ["Edmund Highcock", "Ferdinand van Wyk"]
-  s.date = "2014-07-03"
+  s.date = "2014-07-06"
   s.description = "GS2 is a gyrokinetic flux tube initial value turbulence code which can be used for fusion or astrophysical plasmas. CodeRunner is a framework for the automated running and analysis of large simulations. This module allows GS2 (and its sister code AstroGK) to harness the power of the CodeRunner framework."
   s.email = "edmundhighcock@sourceforge.net"
   s.extensions = ["ext/extconf.rb"]
@@ -74,49 +71,46 @@ Gem::Specification.new do |s|
     "sync_variables/helper.rb",
     "sync_variables/sync_variables.rb",
     "sync_variables_sgk/helper.rb",
-    "sync_variables_sgk/sync_variables_sgk.rb",
-    "test/agk_slab_itg_low_kperp.in",
-    "test/agk_slab_itg_low_kperp.tgz",
-    "test/cyclone_low_res.in",
-    "test/cyclone_low_res.tgz",
-    "test/helper.rb",
-    "test/slab_itg/dummy",
-    "test/test_gs2crmod.rb"
+    "sync_variables_sgk/sync_variables_sgk.rb"
   ]
   s.homepage = "http://gs2crmod.sourceforge.net"
   s.licenses = ["GSLv3"]
+  s.require_paths = ["lib"]
   s.required_ruby_version = Gem::Requirement.new(">= 1.9.1")
-  s.rubygems_version = "2.2.2"
+  s.rubygems_version = "1.8.11"
   s.summary = "Module to allow CodeRunner to run and analyse the GS2 and AstroGK codes."
 
   if s.respond_to? :specification_version then
-    s.specification_version = 4
+    s.specification_version = 3
 
     if Gem::Version.new(Gem::VERSION) >= Gem::Version.new('1.2.0') then
       s.add_runtime_dependency(%q<coderunner>, [">= 0.14.15"])
       s.add_runtime_dependency(%q<rubyhacks>, [">= 0.1.2"])
       s.add_runtime_dependency(%q<ruby-netcdf-updated>, [">= 0.6.6.1"])
-      s.add_development_dependency(%q<shoulda>, [">= 0"])
+      s.add_development_dependency(%q<shoulda>, ["= 3.0.1"])
       s.add_development_dependency(%q<rdoc>, ["~> 3.12"])
       s.add_development_dependency(%q<bundler>, ["> 1.0.0"])
       s.add_development_dependency(%q<jeweler>, [">= 1.8.4"])
+      s.add_development_dependency(%q<minitest>, ["~> 4"])
     else
       s.add_dependency(%q<coderunner>, [">= 0.14.15"])
       s.add_dependency(%q<rubyhacks>, [">= 0.1.2"])
       s.add_dependency(%q<ruby-netcdf-updated>, [">= 0.6.6.1"])
-      s.add_dependency(%q<shoulda>, [">= 0"])
+      s.add_dependency(%q<shoulda>, ["= 3.0.1"])
       s.add_dependency(%q<rdoc>, ["~> 3.12"])
       s.add_dependency(%q<bundler>, ["> 1.0.0"])
       s.add_dependency(%q<jeweler>, [">= 1.8.4"])
+      s.add_dependency(%q<minitest>, ["~> 4"])
     end
   else
     s.add_dependency(%q<coderunner>, [">= 0.14.15"])
     s.add_dependency(%q<rubyhacks>, [">= 0.1.2"])
     s.add_dependency(%q<ruby-netcdf-updated>, [">= 0.6.6.1"])
-    s.add_dependency(%q<shoulda>, [">= 0"])
+    s.add_dependency(%q<shoulda>, ["= 3.0.1"])
     s.add_dependency(%q<rdoc>, ["~> 3.12"])
     s.add_dependency(%q<bundler>, ["> 1.0.0"])
     s.add_dependency(%q<jeweler>, [">= 1.8.4"])
+    s.add_dependency(%q<minitest>, ["~> 4"])
   end
 end
 

data/lib/gs2crmod/graphs.rb

@@ -45,6 +45,7 @@ def auto_axiskits(name, options)
 	        'spectrum_over_kx' => ["Spectrum at t = #{sprintf("%.3f" ,(options[:t] or list(:t)[options[:t_index]] or list(:t).values.max))}", '', 1],
 	        'zonal_spectrum' => ["Zonal spectrum at t = #{sprintf("%.3f" ,(options[:t] or list(:t)[options[:t_index]] or list(:t).values.max))}", '', 1],
 	        'spectrum_over_ky' => ["Spectrum at t = #{sprintf("%.3f" ,(options[:t] or list(:t)[options[:t_index]] or list(:t).values.max))}", '', 1],
+	        'es_heat_over_kx' => ["Heat Flux at t = #{sprintf("%.3f" ,(options[:t] or list(:t)[options[:t_index]] or list(:t).values.max))}", 'Q_gB', 1],
 	        'es_heat_over_ky' => ["Heat Flux at t = #{sprintf("%.3f" ,(options[:t] or list(:t)[options[:t_index]] or list(:t).values.max))}", 'Q_gB', 1],
 	       	'es_heat_flux_over_ky_over_kx' => ["Heat flux at t = #{sprintf("%.3f" ,(options[:t] or list(:t)[options[:t_index]] or list(:t).values.max))}", '', 2],
 	       	'spectrum_over_kpar' => ["Spectrum at t = #{sprintf("%.3f" ,(options[:t] or list(:t)[options[:t_index]] or list(:t).values.max))}", '', 1],
@@ -348,7 +349,7 @@ module GraphKits
 
 	alias :eigenfunction_graphkit :efn_graphkit
 		
-	def es_heat_flux_vs_ky_vs_kx_graphkit(options={})
+	def es_heat_vs_ky_vs_kx_graphkit(options={})
 		case options[:command]
 		when :help
 			return  "Graph of electrostatic contribution to heat flux at a given time vs kx and ky"
@@ -365,18 +366,28 @@ module GraphKits
 		end
 	end
 
+	def es_heat_vs_kx_graphkit(options={})
+		case options[:command]
+		when :help
+			return "Heat flux vs kx"
+		when :options
+			return [:species_index]
+		else
+			return es_heat_flux_vs_kxy_graphkit(options.absorb({direction: :kx}))
+		end
+	end
 	def es_heat_vs_ky_graphkit(options={})
 		case options[:command]
 		when :help
 			return "Heat flux vs ky"
 		when :options
-			return [:ky_index, :species_index]
+			return [:species_index]
 		else
 			return es_heat_flux_vs_kxy_graphkit(options.absorb({direction: :ky}))
 		end
 	end
 
-	def es_heat_vs_kxy_graphkit(options={})
+	def es_heat_flux_vs_kxy_graphkit(options={})
 		case options[:command]
 		when :help
 			return "Heat flux vs options[:direction]  (kx or ky)"
@@ -384,12 +395,12 @@ module GraphKits
 			return [:ky_index, :species_index]
 		else
 			kxy = options[:direction]||options[:kxy] 
-			kit = GraphKit.autocreate({x: axiskit(kxy.to_s, options), y: axiskit("es_flux_vs_#{kxy}", options)})
+			kit = GraphKit.autocreate({x: axiskit(kxy.to_s, options), y: axiskit("es_heat_over_#{kxy}", options)})
 			kit.title  = "Heat flux vs #{kxy} for species #{options[:species_index]}"
 			kit.file_name = options[:graphkit_name] + options[:t_index].to_s
 			kit.data[0].with = 'lp'
-			#kit.ylabel = "Phi^2 #{kxy}^2"
 			kit.pointsize = 2.0
+			return kit
 		end
 	end
 

data/lib/gs2crmod/gsl_data.rb

@@ -449,6 +449,47 @@ module GSLVectors
 	end
 	private :es_heat_by_kxy_over_time_gsl_vector
 
+	def es_heat_over_kx_gsl_vector(options)
+		options[:direction] = :kx
+		es_heat_over_kxy_gsl_vector(options)
+	end
+	def es_heat_over_ky_gsl_vector(options)
+		options[:direction] = :ky
+		es_heat_over_kxy_gsl_vector(options)
+	end
+
+  #This function will output the heat flux as a function of kx or ky.
+  #Default behaviour will be to average the heat flux over the time domain.
+	def es_heat_over_kxy_gsl_vector(options)
+		Dir.chdir(@directory) do
+			kxy = options[:direction]
+			raise "Please provide species_index " unless options[:species_index]
+			if kxy==:ky
+				es_heat = (netcdf_file.var('es_heat_by_k').get({'start' => [0,0,options[:species_index]-1, 0], 'end' => [-1,-1,options[:species_index]-1, -1]})) #index = [kx,ky,spec,t]
+        #Need to average over time and sum over kx
+        shape = es_heat.shape
+        es_heat_av = []; temp = [];
+        for iy in 0...shape[1]
+          for ix in 0...shape[0]
+            temp[ix] = es_heat[ix,iy,0,0..-1].sum / shape[3]
+          end
+          es_heat_av[iy] = temp.sum
+        end
+				return es_heat_av.to_gslv
+			else
+				es_heat = (netcdf_file.var('es_heat_by_k').get({'start' => [0,0,options[:species_index]-1, 0], 'end' => [-1,-1,options[:species_index]-1, -1]})) #index = [kx,ky,spec,t]
+        shape = es_heat.shape
+        es_heat_av = []; temp = [];
+        for ix in 0...shape[0]
+          for iy in 0...shape[1]
+            temp[iy] = es_heat[ix,iy,0,0..-1].sum / shape[3]
+          end
+          es_heat_av[ix] = temp.sum
+        end
+				return es_heat_av.to_gslv
+			end
+		end
+	end
 	def phi2_by_kx_over_time_gsl_vector(options)
 		options[:direction] = :kx
 	 	phi2_by_kxy_over_time_gsl_vector(options)

data/lib/gs2crmod/namelists.rb

@@ -402,7 +402,7 @@
        :should_include=>"true",
        :description=>"",
        :tests=>["Tst::FLOAT"],
-       :autoscanned_defaults=>[0.0, 0.75],
+       :autoscanned_defaults=>[0.0, 0.20013433062472832, 0.75],
        :must_pass=>
         [{:test=>"kind_of? Float or kind_of? Integer",
           :explanation=>
@@ -442,7 +442,7 @@
        :description=>
         "Flux surface label. Usually rho = diameter/diameter of LCFS",
        :tests=>["Tst::FLOAT"],
-       :autoscanned_defaults=>[0.5, 0.6, 0.8, 1.0],
+       :autoscanned_defaults=>[0.33, 0.5, 0.6, 0.8, 1.0],
        :must_pass=>
         [{:test=>"kind_of? Float or kind_of? Integer",
           :explanation=>
@@ -456,7 +456,7 @@
        :description=>
         "Sets value of the safety factor when using local toroidal equilibrium model.",
        :tests=>["Tst::FLOAT"],
-       :autoscanned_defaults=>[1.5],
+       :autoscanned_defaults=>[1.147066305282792, 1.5],
        :must_pass=>
         [{:test=>"kind_of? Float or kind_of? Integer",
           :explanation=>
@@ -470,7 +470,7 @@
        :description=>
         "Sets local elongation when local toroidal equilibrium is specified.",
        :tests=>["Tst::FLOAT"],
-       :autoscanned_defaults=>[1.0],
+       :autoscanned_defaults=>[1.0, 1.3185652797218639],
        :must_pass=>
         [{:test=>"kind_of? Float or kind_of? Integer",
           :explanation=>
@@ -483,7 +483,7 @@
        :should_include=>"true",
        :description=>"akappri = dkappa/drho",
        :tests=>["Tst::FLOAT"],
-       :autoscanned_defaults=>[0.0],
+       :autoscanned_defaults=>[-0.006360432757579471, 0.0],
        :must_pass=>
         [{:test=>"kind_of? Float or kind_of? Integer",
           :explanation=>
@@ -496,7 +496,7 @@
        :should_include=>"true",
        :description=>"tri = arcsin[(R(max(Z))-R_major)/r_mid]",
        :tests=>["Tst::FLOAT"],
-       :autoscanned_defaults=>[0.0],
+       :autoscanned_defaults=>[0.0, 0.004358569789972528],
        :must_pass=>
         [{:test=>"kind_of? Float or kind_of? Integer",
           :explanation=>
@@ -509,7 +509,7 @@
        :should_include=>"true",
        :description=>"tripri =  dtri/drho",
        :tests=>["Tst::FLOAT"],
-       :autoscanned_defaults=>[0.0],
+       :autoscanned_defaults=>[0.0, 0.12435021170306493],
        :must_pass=>
         [{:test=>"kind_of? Float or kind_of? Integer",
           :explanation=>
@@ -522,7 +522,7 @@
        :should_include=>"true",
        :description=>"shift = -R q**2 dbeta/drho (>0)",
        :tests=>["Tst::FLOAT"],
-       :autoscanned_defaults=>[0.0, 0],
+       :autoscanned_defaults=>[-0.17067265951553612, 0.0, 0],
        :must_pass=>
         [{:test=>"kind_of? Float or kind_of? Integer",
           :explanation=>
@@ -642,7 +642,29 @@
        :autoscanned_defaults=>[".false."],
        :type=>:Fortran_Bool,
        :code_name=>:gb_to_cv,
-       :module=>:theta_grid}}},
+       :module=>:theta_grid},
+     :cvdriftknob=>
+      {:should_include=>"true",
+       :description=>"",
+       :help=>"",
+       :code_name=>:cvdriftknob,
+       :must_pass=>
+        [{:test=>"kind_of? Numeric",
+          :explanation=>
+           "This variable must be a floating point number (an integer is also acceptable: it will be converted into a floating point number)."}],
+       :type=>:Float,
+       :autoscanned_defaults=>[1.0]},
+     :gbdriftknob=>
+      {:should_include=>"true",
+       :description=>"",
+       :help=>"",
+       :code_name=>:gbdriftknob,
+       :must_pass=>
+        [{:test=>"kind_of? Numeric",
+          :explanation=>
+           "This variable must be a floating point number (an integer is also acceptable: it will be converted into a floating point number)."}],
+       :type=>:Float,
+       :autoscanned_defaults=>[1.0]}}},
  :theta_grid_salpha_knobs=>
   {:description=>"",
    :should_include=>"true",
@@ -937,7 +959,7 @@
        :should_include=>"true",
        :description=>nil,
        :tests=>["Tst::FLOAT"],
-       :autoscanned_defaults=>[0.8, 1],
+       :autoscanned_defaults=>[0.0, 0.8, 1],
        :must_pass=>
         [{:test=>"kind_of? Float or kind_of? Integer",
           :explanation=>
@@ -1163,7 +1185,17 @@
           :explanation=>"This variable must be an integer."}],
        :autoscanned_defaults=>[],
        :type=>:Integer,
-       :code_name=>:invLp_input}}},
+       :code_name=>:invLp_input},
+     :chs_eq=>
+      {:should_include=>"true",
+       :description=>"Use equilbrium data from the CHEASE file ogyropsi.dat",
+       :help=>"Use equilbrium data from the CHEASE file ogyropsi.dat",
+       :code_name=>:chs_eq,
+       :must_pass=>
+        [{:test=>"kind_of? String and FORTRAN_BOOLS.include? self",
+          :explanation=>
+           "This variable must be a fortran boolean. (In Ruby this is represented as a string: e.g. '.true.')"}],
+       :type=>:Fortran_Bool}}},
  :le_grids_knobs=>
   {:description=>"PITCH ANGLE/ENERGY GRID SETUP",
    :should_include=>"true",
@@ -1762,6 +1794,28 @@
           :explanation=>
            "This variable must be a fortran boolean. (In Ruby this is represented as a string: e.g. '.true.')"}],
        :type=>:Fortran_Bool,
+       :autoscanned_defaults=>[".false."]},
+     :wfb_cmr=>
+      {:should_include=>"true",
+       :description=>"",
+       :help=>"",
+       :code_name=>:wfb_cmr,
+       :must_pass=>
+        [{:test=>"kind_of? String and FORTRAN_BOOLS.include? self",
+          :explanation=>
+           "This variable must be a fortran boolean. (In Ruby this is represented as a string: e.g. '.true.')"}],
+       :type=>:Fortran_Bool,
+       :autoscanned_defaults=>[".false."]},
+     :opt_source=>
+      {:should_include=>"true",
+       :description=>"",
+       :help=>"",
+       :code_name=>:opt_source,
+       :must_pass=>
+        [{:test=>"kind_of? String and FORTRAN_BOOLS.include? self",
+          :explanation=>
+           "This variable must be a fortran boolean. (In Ruby this is represented as a string: e.g. '.true.')"}],
+       :type=>:Fortran_Bool,
        :autoscanned_defaults=>[".false."]}}},
  :fields_knobs=>
   {:description=>"ALGORITHMIC CHOICES",
@@ -1863,6 +1917,28 @@
           :explanation=>
            "This variable must be a fortran boolean. (In Ruby this is represented as a string: e.g. '.true.')"}],
        :type=>:Fortran_Bool,
+       :autoscanned_defaults=>[".false."]},
+     :field_local_allreduce=>
+      {:should_include=>"true",
+       :description=>"",
+       :help=>"",
+       :code_name=>:field_local_allreduce,
+       :must_pass=>
+        [{:test=>"kind_of? String and FORTRAN_BOOLS.include? self",
+          :explanation=>
+           "This variable must be a fortran boolean. (In Ruby this is represented as a string: e.g. '.true.')"}],
+       :type=>:Fortran_Bool,
+       :autoscanned_defaults=>[".false."]},
+     :field_local_allreduce_sub=>
+      {:should_include=>"true",
+       :description=>"",
+       :help=>"",
+       :code_name=>:field_local_allreduce_sub,
+       :must_pass=>
+        [{:test=>"kind_of? String and FORTRAN_BOOLS.include? self",
+          :explanation=>
+           "This variable must be a fortran boolean. (In Ruby this is represented as a string: e.g. '.true.')"}],
+       :type=>:Fortran_Bool,
        :autoscanned_defaults=>[".false."]}}},
  :knobs=>
   {:description=>"",
@@ -2126,6 +2202,18 @@
           :explanation=>
            "This variable must be a fortran boolean. (In Ruby this is represented as a string: e.g. '.true.')"}],
        :type=>:Fortran_Bool,
+       :autoscanned_defaults=>[".false."]},
+     :do_eigsolve=>
+      {:should_include=>"true",
+       :description=>"",
+       :help=>
+        "A new eigenvalue solve mode has been implemented. Contact David Dickinson for details.",
+       :code_name=>:do_eigsolve,
+       :must_pass=>
+        [{:test=>"kind_of? String and FORTRAN_BOOLS.include? self",
+          :explanation=>
+           "This variable must be a fortran boolean. (In Ruby this is represented as a string: e.g. '.true.')"}],
+       :type=>:Fortran_Bool,
        :autoscanned_defaults=>[".false."]}}},
  :reinit_knobs=>
   {:description=>"",
@@ -2327,6 +2415,28 @@
           :explanation=>
            "This variable must be a fortran boolean. (In Ruby this is represented as a string: e.g. '.true.')"}],
        :type=>:Fortran_Bool,
+       :autoscanned_defaults=>[".false."]},
+     :opt_redist_persist=>
+      {:should_include=>"true",
+       :description=>"",
+       :help=>"",
+       :code_name=>:opt_redist_persist,
+       :must_pass=>
+        [{:test=>"kind_of? String and FORTRAN_BOOLS.include? self",
+          :explanation=>
+           "This variable must be a fortran boolean. (In Ruby this is represented as a string: e.g. '.true.')"}],
+       :type=>:Fortran_Bool,
+       :autoscanned_defaults=>[".false."]},
+     :opt_redist_persist_overlap=>
+      {:should_include=>"true",
+       :description=>"",
+       :help=>"",
+       :code_name=>:opt_redist_persist_overlap,
+       :must_pass=>
+        [{:test=>"kind_of? String and FORTRAN_BOOLS.include? self",
+          :explanation=>
+           "This variable must be a fortran boolean. (In Ruby this is represented as a string: e.g. '.true.')"}],
+       :type=>:Fortran_Bool,
        :autoscanned_defaults=>[".false."]}}},
  :collisions_knobs=>
   {:description=>"COLLISIONS",
@@ -4792,7 +4902,18 @@
         [{:test=>"kind_of? Integer",
           :explanation=>"This variable must be an integer."}],
        :type=>:Integer,
-       :autoscanned_defaults=>[4000]}},
+       :autoscanned_defaults=>[10000]},
+     :use_nonlin_convergence=>
+      {:should_include=>"true",
+       :description=>"",
+       :help=>"",
+       :code_name=>:use_nonlin_convergence,
+       :must_pass=>
+        [{:test=>"kind_of? String and FORTRAN_BOOLS.include? self",
+          :explanation=>
+           "This variable must be a fortran boolean. (In Ruby this is represented as a string: e.g. '.true.')"}],
+       :type=>:Fortran_Bool,
+       :autoscanned_defaults=>[".false."]}},
    :help=>
     "Controls what information is output by GS2 during and at the end of a simulation."},
  :testgridgen=>
@@ -6118,4 +6239,112 @@
           :explanation=>
            "This variable must be a fortran boolean. (In Ruby this is represented as a string: e.g. '.true.')"}],
        :type=>:Fortran_Bool,
-       :autoscanned_defaults=>[".true."]}}}}
+       :autoscanned_defaults=>[".true."]}}},
+ :eigval_knobs=>
+  {:description=>"",
+   :should_include=>"true",
+   :variables=>
+    {:n_eig=>
+      {:should_include=>"true",
+       :description=>"",
+       :help=>"",
+       :code_name=>:n_eig,
+       :must_pass=>
+        [{:test=>"kind_of? Integer",
+          :explanation=>"This variable must be an integer."}],
+       :type=>:Integer,
+       :autoscanned_defaults=>[1]},
+     :max_iter=>
+      {:should_include=>"true",
+       :description=>"",
+       :help=>"",
+       :code_name=>:max_iter,
+       :must_pass=>
+        [{:test=>"kind_of? Integer",
+          :explanation=>"This variable must be an integer."}],
+       :type=>:Integer,
+       :autoscanned_defaults=>["PETSC_DECIDE"]},
+     :tolerance=>
+      {:should_include=>"true",
+       :description=>"",
+       :help=>"",
+       :code_name=>:tolerance,
+       :must_pass=>
+        [{:test=>"kind_of? Numeric",
+          :explanation=>
+           "This variable must be a floating point number (an integer is also acceptable: it will be converted into a floating point number)."}],
+       :type=>:Float,
+       :autoscanned_defaults=>[1.0e-06]},
+     :solver_option=>
+      {:should_include=>"true",
+       :description=>"",
+       :help=>"",
+       :code_name=>:solver_option,
+       :must_pass=>
+        [{:test=>"kind_of? String",
+          :explanation=>"This variable must be a string."}],
+       :type=>:String,
+       :autoscanned_defaults=>["default"]},
+     :extraction_option=>
+      {:should_include=>"true",
+       :description=>"",
+       :help=>"",
+       :code_name=>:extraction_option,
+       :must_pass=>
+        [{:test=>"kind_of? String",
+          :explanation=>"This variable must be a string."}],
+       :type=>:String,
+       :autoscanned_defaults=>["default"]},
+     :which_option=>
+      {:should_include=>"true",
+       :description=>"",
+       :help=>"",
+       :code_name=>:which_option,
+       :must_pass=>
+        [{:test=>"kind_of? String",
+          :explanation=>"This variable must be a string."}],
+       :type=>:String,
+       :autoscanned_defaults=>["default"]},
+     :transform_option=>
+      {:should_include=>"true",
+       :description=>"",
+       :help=>"",
+       :code_name=>:transform_option,
+       :must_pass=>
+        [{:test=>"kind_of? String",
+          :explanation=>"This variable must be a string."}],
+       :type=>:String,
+       :autoscanned_defaults=>["default"]},
+     :targ_re=>
+      {:should_include=>"true",
+       :description=>"",
+       :help=>"",
+       :code_name=>:targ_re,
+       :must_pass=>
+        [{:test=>"kind_of? Numeric",
+          :explanation=>
+           "This variable must be a floating point number (an integer is also acceptable: it will be converted into a floating point number)."}],
+       :type=>:Float,
+       :autoscanned_defaults=>[0.5]},
+     :targ_im=>
+      {:should_include=>"true",
+       :description=>"",
+       :help=>"",
+       :code_name=>:targ_im,
+       :must_pass=>
+        [{:test=>"kind_of? Numeric",
+          :explanation=>
+           "This variable must be a floating point number (an integer is also acceptable: it will be converted into a floating point number)."}],
+       :type=>:Float,
+       :autoscanned_defaults=>[0.5]},
+     :use_ginit=>
+      {:should_include=>"true",
+       :description=>"",
+       :help=>"",
+       :code_name=>:use_ginit,
+       :must_pass=>
+        [{:test=>"kind_of? String and FORTRAN_BOOLS.include? self",
+          :explanation=>
+           "This variable must be a fortran boolean. (In Ruby this is represented as a string: e.g. '.true.')"}],
+       :type=>:Fortran_Bool,
+       :autoscanned_defaults=>[".false."]}}}}