gs2crmod 0.11.3 → 0.11.4
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- data/Rakefile +5 -0
- data/VERSION +1 -1
- data/gs2crmod.gemspec +4 -2
- data/lib/gs2crmod/spectrogk/namelists.rb +599 -5
- data/lib/gs2crmod/spectrogk.rb +1 -1
- data/sync_variables_sgk/helper.rb +18 -0
- data/sync_variables_sgk/sync_variables_sgk.rb +5 -0
- metadata +4 -2
data/Rakefile
CHANGED
@@ -53,6 +53,11 @@ Rake::TestTask.new(:sync_variables) do |test|
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test.pattern = 'sync_variables/sync_variables.rb'
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test.verbose = true
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end
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+
Rake::TestTask.new(:sync_variables_sgk) do |test|
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test.libs << 'lib' << 'sync_variables_sgk'
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test.pattern = 'sync_variables_sgk/sync_variables_sgk.rb'
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test.verbose = true
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end
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Rake::TestTask.new(:sync_mediawiki) do |test|
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test.libs << 'lib' << 'sync_mediawiki'
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test.pattern = 'sync_mediawiki/sync_mediawiki.rb'
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data/VERSION
CHANGED
@@ -1 +1 @@
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1
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-
0.11.
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1
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+
0.11.4
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data/gs2crmod.gemspec
CHANGED
@@ -5,11 +5,11 @@
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5
5
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6
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Gem::Specification.new do |s|
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s.name = "gs2crmod"
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-
s.version = "0.11.
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8
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+
s.version = "0.11.4"
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s.required_rubygems_version = Gem::Requirement.new(">= 0") if s.respond_to? :required_rubygems_version=
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s.authors = ["Edmund Highcock", "Ferdinand van Wyk"]
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-
s.date = "2014-01-
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+
s.date = "2014-01-28"
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s.description = "GS2 is a gyrokinetic flux tube initial value turbulence code which can be used for fusion or astrophysical plasmas. CodeRunner is a framework for the automated running and analysis of large simulations. This module allows GS2 (and its sister code AstroGK) to harness the power of the CodeRunner framework."
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s.email = "edmundhighcock@sourceforge.net"
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s.extensions = ["ext/extconf.rb"]
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@@ -69,6 +69,8 @@ Gem::Specification.new do |s|
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"sync_mediawiki/sync_mediawiki.rb",
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"sync_variables/helper.rb",
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"sync_variables/sync_variables.rb",
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+
"sync_variables_sgk/helper.rb",
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+
"sync_variables_sgk/sync_variables_sgk.rb",
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"test/agk_slab_itg_low_kperp.in",
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"test/agk_slab_itg_low_kperp.tgz",
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"test/cyclone_low_res.in",
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@@ -556,7 +556,103 @@
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[{:test=>"kind_of? String and FORTRAN_BOOLS.include? self",
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:explanation=>
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"This variable must be a fortran boolean. (In Ruby this is represented as a string: e.g. '.true.')"}],
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-
:type=>:Fortran_Bool}
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+
:type=>:Fortran_Bool},
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:debug=>
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{:should_include=>"true",
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:description=>"",
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:help=>"",
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:code_name=>:debug,
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:must_pass=>
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[{:test=>"kind_of? String and FORTRAN_BOOLS.include? self",
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:explanation=>
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"This variable must be a fortran boolean. (In Ruby this is represented as a string: e.g. '.true.')"}],
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:type=>:Fortran_Bool},
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:do_write_dynfields=>
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{:should_include=>"true",
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:description=>"",
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:help=>"",
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:code_name=>:do_write_dynfields,
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+
:must_pass=>
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+
[{:test=>"kind_of? String and FORTRAN_BOOLS.include? self",
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:explanation=>
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"This variable must be a fortran boolean. (In Ruby this is represented as a string: e.g. '.true.')"}],
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:type=>:Fortran_Bool},
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+
:nwrite_dyn=>
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{:should_include=>"true",
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:description=>"",
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:help=>"",
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:code_name=>:nwrite_dyn,
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:must_pass=>
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[{:test=>"kind_of? Integer",
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:explanation=>"This variable must be an integer."}],
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:type=>:Integer},
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:debug_moi=>
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{:should_include=>"true",
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:description=>"",
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:help=>"",
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:code_name=>:debug_moi,
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:must_pass=>
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[{:test=>"kind_of? String and FORTRAN_BOOLS.include? self",
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:explanation=>
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"This variable must be a fortran boolean. (In Ruby this is represented as a string: e.g. '.true.')"}],
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:type=>:Fortran_Bool},
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:write_moi=>
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{:should_include=>"true",
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:description=>"",
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:help=>"",
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:code_name=>:write_moi,
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:must_pass=>
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[{:test=>"kind_of? String and FORTRAN_BOOLS.include? self",
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:explanation=>
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"This variable must be a fortran boolean. (In Ruby this is represented as a string: e.g. '.true.')"}],
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:type=>:Fortran_Bool},
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:moi_no_fft=>
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{:should_include=>"true",
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:description=>"",
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:help=>"",
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:code_name=>:moi_no_fft,
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:must_pass=>
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[{:test=>"kind_of? String and FORTRAN_BOOLS.include? self",
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:explanation=>
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"This variable must be a fortran boolean. (In Ruby this is represented as a string: e.g. '.true.')"}],
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:type=>:Fortran_Bool},
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:n_modes_of_interest=>
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{:should_include=>"true",
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:description=>"",
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:help=>"",
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:code_name=>:n_modes_of_interest,
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:must_pass=>
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[{:test=>"kind_of? Integer",
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:explanation=>"This variable must be an integer."}],
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:type=>:Integer},
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:write_freq=>
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{:should_include=>"true",
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:description=>"",
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:help=>"",
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:code_name=>:write_freq,
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:must_pass=>
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[{:test=>"kind_of? String and FORTRAN_BOOLS.include? self",
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:explanation=>
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"This variable must be a fortran boolean. (In Ruby this is represented as a string: e.g. '.true.')"}],
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:type=>:Fortran_Bool},
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:nwrite_freq=>
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{:should_include=>"true",
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:description=>"",
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:help=>"",
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:code_name=>:nwrite_freq,
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:must_pass=>
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[{:test=>"kind_of? Integer",
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:explanation=>"This variable must be an integer."}],
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:type=>:Integer},
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:nk_freq=>
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{:should_include=>"true",
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:description=>"",
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:help=>"",
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:code_name=>:nk_freq,
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:must_pass=>
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[{:test=>"kind_of? Integer",
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:explanation=>"This variable must be an integer."}],
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:type=>:Integer}}},
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:equil_io=>
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{:description=>"",
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:should_include=>"true",
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@@ -757,6 +853,34 @@
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:help=>nil,
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:tests=>["Tst::FORTRAN_BOOL"],
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:code_name=>:restarting,
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:must_pass=>
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[{:test=>"kind_of? String and FORTRAN_BOOLS.include? self",
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:explanation=>
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"This variable must be a fortran boolean. (In Ruby this is represented as a string: e.g. '.true.')"}],
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:type=>:Fortran_Bool},
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:seed1=>
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{:should_include=>"true",
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:description=>nil,
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:help=>nil,
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:code_name=>:seed1,
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:must_pass=>
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[{:test=>"kind_of? Integer",
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:explanation=>"This variable must be an integer."}],
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:type=>:Integer},
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:seed2=>
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{:should_include=>"true",
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:description=>"",
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:help=>"",
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:code_name=>:seed2,
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:must_pass=>
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[{:test=>"kind_of? Integer",
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:explanation=>"This variable must be an integer."}],
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:type=>:Integer},
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:randomize=>
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{:should_include=>"true",
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:description=>"",
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:help=>"",
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:code_name=>:randomize,
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:must_pass=>
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[{:test=>"kind_of? String and FORTRAN_BOOLS.include? self",
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:explanation=>
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@@ -793,8 +917,17 @@
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:must_pass=>
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[{:test=>"kind_of? Integer",
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:explanation=>"This variable must be an integer."}],
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-
:type=>:Integer}
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-
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+
:type=>:Integer},
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:mode_amplitude=>
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{:should_include=>"true",
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:description=>"",
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:help=>"",
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:code_name=>:mode_amplitude,
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:must_pass=>
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[{:test=>"kind_of? Numeric",
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:explanation=>
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"This variable must be a floating point number (an integer is also acceptable: it will be converted into a floating point number)."}],
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:type=>:Float}}},
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:collisions_knobs=>
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{:description=>"",
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:should_include=>"true",
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@@ -2840,9 +2973,30 @@
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:explanation=>
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"This variable must be a fortran boolean. (In Ruby this is represented as a string: e.g. '.true.')"}],
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:type=>:Fortran_Bool},
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-
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:fourier_filter=>
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{:should_include=>"true",
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-
:description=>"Method of
|
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:description=>"Method of Fourier filtering: hou_li, two_thirds",
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:help=>"Method of Fourier filtering: hou_li, two_thirds",
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:tests=>["Tst::STRING"],
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:code_name=>:fourier_filter,
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:must_pass=>
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[{:test=>"kind_of? String",
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:explanation=>"This variable must be a string."}],
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:type=>:String},
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:suppress_kz=>
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{:should_include=>"true",
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:description=>"Method of suppressing low kz modes: none, zero, krook",
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:help=>"Method of suppressing low kz modes: none, zero, krook",
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:tests=>["Tst::STRING"],
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:code_name=>:suppress_kz,
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:must_pass=>
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[{:test=>"kind_of? String",
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:explanation=>"This variable must be a string."}],
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:type=>:String},
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:phi_method=>
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{:should_include=>"true",
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:description=>
|
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"Method of determining fields from the distribution in Hankel space",
|
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3000
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:help=>
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"Should the nonlinear terms be calculated?\n \n** 'none', 'default', 'off': Do not include nonlinear terms, i.e. run a linear calculation.\n** 'on' Include nonlinear terms.",
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:tests=>["Tst::STRING"],
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@@ -2882,6 +3036,446 @@
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:help=>nil,
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:tests=>["Tst::INT"],
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:code_name=>:nperiod,
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:must_pass=>
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[{:test=>"kind_of? Integer",
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:explanation=>"This variable must be an integer."}],
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:type=>:Integer}}},
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:freq_mode=>
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{:description=>"",
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:should_include=>"true",
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:variables=>
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{:kx=>
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{:should_include=>"true",
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:description=>"",
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:help=>"",
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:code_name=>:kx,
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:must_pass=>
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[{:test=>"kind_of? Integer",
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:explanation=>"This variable must be an integer."}],
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:type=>:Integer},
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:ky=>
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{:should_include=>"true",
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:description=>"",
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:help=>"",
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:code_name=>:ky,
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:must_pass=>
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[{:test=>"kind_of? Integer",
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:explanation=>"This variable must be an integer."}],
|
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:type=>:Integer}}},
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:mode_of_interest=>
|
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{:description=>"",
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:should_include=>"true",
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:variables=>
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{:kx_moi=>
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{:should_include=>"true",
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:description=>"",
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:help=>"",
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:code_name=>:kx,
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:must_pass=>
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[{:test=>"kind_of? Integer",
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:explanation=>"This variable must be an integer."}],
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:type=>:Integer},
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:ky_moi=>
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{:should_include=>"true",
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:description=>"",
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:help=>"",
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:code_name=>:ky,
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:must_pass=>
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[{:test=>"kind_of? Integer",
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:explanation=>"This variable must be an integer."}],
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:type=>:Integer},
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:kz=>
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{:should_include=>"true",
|
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:description=>"",
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:help=>"",
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:code_name=>:kz,
|
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:must_pass=>
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[{:test=>"kind_of? Integer",
|
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:explanation=>"This variable must be an integer."}],
|
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:type=>:Integer}}},
|
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:gk_eigen_knobs=>
|
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{:description=>"",
|
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:should_include=>"true",
|
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:variables=>
|
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{:nk_eigen=>
|
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{:should_include=>"true",
|
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:description=>"",
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:help=>"",
|
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:code_name=>:nk_eigen,
|
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:must_pass=>
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[{:test=>"kind_of? Integer",
|
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|
+
:explanation=>"This variable must be an integer."}],
|
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:type=>:Integer},
|
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:prec=>
|
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{:should_include=>"true",
|
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:description=>"",
|
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:help=>"",
|
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:code_name=>:prec,
|
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:must_pass=>
|
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+
[{:test=>"kind_of? Numeric",
|
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:explanation=>
|
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|
+
"This variable must be a floating point number (an integer is also acceptable: it will be converted into a floating point number)."}],
|
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|
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:type=>:Float},
|
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:tol=>
|
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{:should_include=>"true",
|
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:description=>"",
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:help=>"",
|
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:code_name=>:tol,
|
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:must_pass=>
|
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[{:test=>"kind_of? Numeric",
|
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:explanation=>
|
3127
|
+
"This variable must be a floating point number (an integer is also acceptable: it will be converted into a floating point number)."}],
|
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|
+
:type=>:Float},
|
3129
|
+
:gk_write_disp=>
|
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|
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{:should_include=>"true",
|
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:description=>"",
|
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|
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:help=>"",
|
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:code_name=>:gk_write_disp,
|
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:must_pass=>
|
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|
+
[{:test=>"kind_of? String and FORTRAN_BOOLS.include? self",
|
3136
|
+
:explanation=>
|
3137
|
+
"This variable must be a fortran boolean. (In Ruby this is represented as a string: e.g. '.true.')"}],
|
3138
|
+
:type=>:Fortran_Bool},
|
3139
|
+
:gk_write_g=>
|
3140
|
+
{:should_include=>"true",
|
3141
|
+
:description=>"",
|
3142
|
+
:help=>"",
|
3143
|
+
:code_name=>:gk_write_g,
|
3144
|
+
:must_pass=>
|
3145
|
+
[{:test=>"kind_of? String and FORTRAN_BOOLS.include? self",
|
3146
|
+
:explanation=>
|
3147
|
+
"This variable must be a fortran boolean. (In Ruby this is represented as a string: e.g. '.true.')"}],
|
3148
|
+
:type=>:Fortran_Bool},
|
3149
|
+
:nwrite_eigfields=>
|
3150
|
+
{:should_include=>"true",
|
3151
|
+
:description=>"",
|
3152
|
+
:help=>"",
|
3153
|
+
:code_name=>:nwrite_eigfields,
|
3154
|
+
:must_pass=>
|
3155
|
+
[{:test=>"kind_of? Integer",
|
3156
|
+
:explanation=>"This variable must be an integer."}],
|
3157
|
+
:type=>:Integer},
|
3158
|
+
:eigfields_gnuplot_spacing=>
|
3159
|
+
{:should_include=>"true",
|
3160
|
+
:description=>"",
|
3161
|
+
:help=>"",
|
3162
|
+
:code_name=>:eigfields_gnuplot_spacing,
|
3163
|
+
:must_pass=>
|
3164
|
+
[{:test=>"kind_of? String and FORTRAN_BOOLS.include? self",
|
3165
|
+
:explanation=>
|
3166
|
+
"This variable must be a fortran boolean. (In Ruby this is represented as a string: e.g. '.true.')"}],
|
3167
|
+
:type=>:Fortran_Bool},
|
3168
|
+
:eigfields_immediate_write=>
|
3169
|
+
{:should_include=>"true",
|
3170
|
+
:description=>"",
|
3171
|
+
:help=>"",
|
3172
|
+
:code_name=>:eigfields_immediate_write,
|
3173
|
+
:must_pass=>
|
3174
|
+
[{:test=>"kind_of? String and FORTRAN_BOOLS.include? self",
|
3175
|
+
:explanation=>
|
3176
|
+
"This variable must be a fortran boolean. (In Ruby this is represented as a string: e.g. '.true.')"}],
|
3177
|
+
:type=>:Fortran_Bool}}},
|
3178
|
+
:gk_eigen=>
|
3179
|
+
{:description=>"",
|
3180
|
+
:should_include=>"true",
|
3181
|
+
:variables=>
|
3182
|
+
{:kx_eigen=>
|
3183
|
+
{:should_include=>"true",
|
3184
|
+
:description=>"",
|
3185
|
+
:help=>"",
|
3186
|
+
:code_name=>:kx,
|
3187
|
+
:must_pass=>
|
3188
|
+
[{:test=>"kind_of? Integer",
|
3189
|
+
:explanation=>"This variable must be an integer."}],
|
3190
|
+
:type=>:Integer},
|
3191
|
+
:ky_eigen=>
|
3192
|
+
{:should_include=>"true",
|
3193
|
+
:description=>"",
|
3194
|
+
:help=>"",
|
3195
|
+
:code_name=>:ky,
|
3196
|
+
:must_pass=>
|
3197
|
+
[{:test=>"kind_of? Integer",
|
3198
|
+
:explanation=>"This variable must be an integer."}],
|
3199
|
+
:type=>:Integer},
|
3200
|
+
:kz_eigen=>
|
3201
|
+
{:should_include=>"true",
|
3202
|
+
:description=>"",
|
3203
|
+
:help=>"",
|
3204
|
+
:code_name=>:kz,
|
3205
|
+
:must_pass=>
|
3206
|
+
[{:test=>"kind_of? Integer",
|
3207
|
+
:explanation=>"This variable must be an integer."}],
|
3208
|
+
:type=>:Integer},
|
3209
|
+
:amp=>
|
3210
|
+
{:should_include=>"true",
|
3211
|
+
:description=>"",
|
3212
|
+
:help=>"",
|
3213
|
+
:code_name=>:amp,
|
3214
|
+
:must_pass=>
|
3215
|
+
[{:test=>"kind_of? Numeric",
|
3216
|
+
:explanation=>
|
3217
|
+
"This variable must be a floating point number (an integer is also acceptable: it will be converted into a floating point number)."}],
|
3218
|
+
:type=>:Float},
|
3219
|
+
:phase=>
|
3220
|
+
{:should_include=>"true",
|
3221
|
+
:description=>"",
|
3222
|
+
:help=>"",
|
3223
|
+
:code_name=>:phase,
|
3224
|
+
:must_pass=>
|
3225
|
+
[{:test=>"kind_of? Numeric",
|
3226
|
+
:explanation=>
|
3227
|
+
"This variable must be a floating point number (an integer is also acceptable: it will be converted into a floating point number)."}],
|
3228
|
+
:type=>:Float},
|
3229
|
+
:om_est=>
|
3230
|
+
{:should_include=>"true",
|
3231
|
+
:description=>"",
|
3232
|
+
:help=>"",
|
3233
|
+
:code_name=>:om_est,
|
3234
|
+
:must_pass=>
|
3235
|
+
[{:test=>"kind_of? Complex",
|
3236
|
+
:explanation=>"This variable must be a complex number."}],
|
3237
|
+
:type=>:Complex},
|
3238
|
+
:prec_eigen=>
|
3239
|
+
{:should_include=>"true",
|
3240
|
+
:description=>"",
|
3241
|
+
:help=>"",
|
3242
|
+
:code_name=>:prec,
|
3243
|
+
:must_pass=>
|
3244
|
+
[{:test=>"kind_of? Numeric",
|
3245
|
+
:explanation=>
|
3246
|
+
"This variable must be a floating point number (an integer is also acceptable: it will be converted into a floating point number)."}],
|
3247
|
+
:type=>:Float},
|
3248
|
+
:tol_eigen=>
|
3249
|
+
{:should_include=>"true",
|
3250
|
+
:description=>"",
|
3251
|
+
:help=>"",
|
3252
|
+
:code_name=>:tol,
|
3253
|
+
:must_pass=>
|
3254
|
+
[{:test=>"kind_of? Numeric",
|
3255
|
+
:explanation=>
|
3256
|
+
"This variable must be a floating point number (an integer is also acceptable: it will be converted into a floating point number)."}],
|
3257
|
+
:type=>:Float},
|
3258
|
+
:localized=>
|
3259
|
+
{:should_include=>"true",
|
3260
|
+
:description=>"",
|
3261
|
+
:help=>"",
|
3262
|
+
:code_name=>:localized,
|
3263
|
+
:must_pass=>
|
3264
|
+
[{:test=>"kind_of? Numeric",
|
3265
|
+
:explanation=>
|
3266
|
+
"This variable must be a floating point number (an integer is also acceptable: it will be converted into a floating point number)."}],
|
3267
|
+
:type=>:Float},
|
3268
|
+
:z0_eigen=>
|
3269
|
+
{:should_include=>"true",
|
3270
|
+
:description=>"",
|
3271
|
+
:help=>"",
|
3272
|
+
:code_name=>:z0,
|
3273
|
+
:must_pass=>
|
3274
|
+
[{:test=>"kind_of? Numeric",
|
3275
|
+
:explanation=>
|
3276
|
+
"This variable must be a floating point number (an integer is also acceptable: it will be converted into a floating point number)."}],
|
3277
|
+
:type=>:Float},
|
3278
|
+
:deltz=>
|
3279
|
+
{:should_include=>"true",
|
3280
|
+
:description=>"",
|
3281
|
+
:help=>"",
|
3282
|
+
:code_name=>:deltz,
|
3283
|
+
:must_pass=>
|
3284
|
+
[{:test=>"kind_of? Numeric",
|
3285
|
+
:explanation=>
|
3286
|
+
"This variable must be a floating point number (an integer is also acceptable: it will be converted into a floating point number)."}],
|
3287
|
+
:type=>:Float},
|
3288
|
+
:power=>
|
3289
|
+
{:should_include=>"true",
|
3290
|
+
:description=>"",
|
3291
|
+
:help=>"",
|
3292
|
+
:code_name=>:power,
|
3293
|
+
:must_pass=>
|
3294
|
+
[{:test=>"kind_of? Numeric",
|
3295
|
+
:explanation=>
|
3296
|
+
"This variable must be a floating point number (an integer is also acceptable: it will be converted into a floating point number)."}],
|
3297
|
+
:type=>:Float}}},
|
3298
|
+
:diagnostics_config=>
|
3299
|
+
{:description=>"",
|
3300
|
+
:should_include=>"true",
|
3301
|
+
:variables=>
|
3302
|
+
{:nwrite=>
|
3303
|
+
{:should_include=>"true",
|
3304
|
+
:description=>"",
|
3305
|
+
:help=>"",
|
3306
|
+
:code_name=>:nwrite,
|
3307
|
+
:must_pass=>
|
3308
|
+
[{:test=>"kind_of? Integer",
|
3309
|
+
:explanation=>"This variable must be an integer."}],
|
3310
|
+
:type=>:Integer},
|
3311
|
+
:write_any=>
|
3312
|
+
{:should_include=>"true",
|
3313
|
+
:description=>"",
|
3314
|
+
:help=>"",
|
3315
|
+
:code_name=>:write_any,
|
3316
|
+
:must_pass=>
|
3317
|
+
[{:test=>"kind_of? String and FORTRAN_BOOLS.include? self",
|
3318
|
+
:explanation=>
|
3319
|
+
"This variable must be a fortran boolean. (In Ruby this is represented as a string: e.g. '.true.')"}],
|
3320
|
+
:type=>:Fortran_Bool},
|
3321
|
+
:write_fields=>
|
3322
|
+
{:should_include=>"true",
|
3323
|
+
:description=>"",
|
3324
|
+
:help=>"",
|
3325
|
+
:code_name=>:write_fields,
|
3326
|
+
:must_pass=>
|
3327
|
+
[{:test=>"kind_of? String and FORTRAN_BOOLS.include? self",
|
3328
|
+
:explanation=>
|
3329
|
+
"This variable must be a fortran boolean. (In Ruby this is represented as a string: e.g. '.true.')"}],
|
3330
|
+
:type=>:Fortran_Bool},
|
3331
|
+
:write_phi_over_time=>
|
3332
|
+
{:should_include=>"true",
|
3333
|
+
:description=>"",
|
3334
|
+
:help=>"",
|
3335
|
+
:code_name=>:write_phi_over_time,
|
3336
|
+
:must_pass=>
|
3337
|
+
[{:test=>"kind_of? String and FORTRAN_BOOLS.include? self",
|
3338
|
+
:explanation=>
|
3339
|
+
"This variable must be a fortran boolean. (In Ruby this is represented as a string: e.g. '.true.')"}],
|
3340
|
+
:type=>:Fortran_Bool},
|
3341
|
+
:write_apar_over_time=>
|
3342
|
+
{:should_include=>"true",
|
3343
|
+
:description=>"",
|
3344
|
+
:help=>"",
|
3345
|
+
:code_name=>:write_apar_over_time,
|
3346
|
+
:must_pass=>
|
3347
|
+
[{:test=>"kind_of? String and FORTRAN_BOOLS.include? self",
|
3348
|
+
:explanation=>
|
3349
|
+
"This variable must be a fortran boolean. (In Ruby this is represented as a string: e.g. '.true.')"}],
|
3350
|
+
:type=>:Fortran_Bool},
|
3351
|
+
:write_bpar_over_time=>
|
3352
|
+
{:should_include=>"true",
|
3353
|
+
:description=>"",
|
3354
|
+
:help=>"",
|
3355
|
+
:code_name=>:write_bpar_over_time,
|
3356
|
+
:must_pass=>
|
3357
|
+
[{:test=>"kind_of? String and FORTRAN_BOOLS.include? self",
|
3358
|
+
:explanation=>
|
3359
|
+
"This variable must be a fortran boolean. (In Ruby this is represented as a string: e.g. '.true.')"}],
|
3360
|
+
:type=>:Fortran_Bool},
|
3361
|
+
:write_dist_fn=>
|
3362
|
+
{:should_include=>"true",
|
3363
|
+
:description=>"",
|
3364
|
+
:help=>"",
|
3365
|
+
:code_name=>:write_dist_fn,
|
3366
|
+
:must_pass=>
|
3367
|
+
[{:test=>"kind_of? String and FORTRAN_BOOLS.include? self",
|
3368
|
+
:explanation=>
|
3369
|
+
"This variable must be a fortran boolean. (In Ruby this is represented as a string: e.g. '.true.')"}],
|
3370
|
+
:type=>:Fortran_Bool},
|
3371
|
+
:write_dist_fn_over_time=>
|
3372
|
+
{:should_include=>"true",
|
3373
|
+
:description=>"",
|
3374
|
+
:help=>"",
|
3375
|
+
:code_name=>:write_dist_fn_over_time,
|
3376
|
+
:must_pass=>
|
3377
|
+
[{:test=>"kind_of? String and FORTRAN_BOOLS.include? self",
|
3378
|
+
:explanation=>
|
3379
|
+
"This variable must be a fortran boolean. (In Ruby this is represented as a string: e.g. '.true.')"}],
|
3380
|
+
:type=>:Fortran_Bool},
|
3381
|
+
:write_fluxes=>
|
3382
|
+
{:should_include=>"true",
|
3383
|
+
:description=>"",
|
3384
|
+
:help=>"",
|
3385
|
+
:code_name=>:write_fluxes,
|
3386
|
+
:must_pass=>
|
3387
|
+
[{:test=>"kind_of? String and FORTRAN_BOOLS.include? self",
|
3388
|
+
:explanation=>
|
3389
|
+
"This variable must be a fortran boolean. (In Ruby this is represented as a string: e.g. '.true.')"}],
|
3390
|
+
:type=>:Fortran_Bool},
|
3391
|
+
:write_fluxes_by_mode=>
|
3392
|
+
{:should_include=>"true",
|
3393
|
+
:description=>"",
|
3394
|
+
:help=>"",
|
3395
|
+
:code_name=>:write_fluxes_by_mode,
|
3396
|
+
:must_pass=>
|
3397
|
+
[{:test=>"kind_of? String and FORTRAN_BOOLS.include? self",
|
3398
|
+
:explanation=>
|
3399
|
+
"This variable must be a fortran boolean. (In Ruby this is represented as a string: e.g. '.true.')"}],
|
3400
|
+
:type=>:Fortran_Bool},
|
3401
|
+
:write_omega=>
|
3402
|
+
{:should_include=>"true",
|
3403
|
+
:description=>"",
|
3404
|
+
:help=>"",
|
3405
|
+
:code_name=>:write_omega,
|
3406
|
+
:must_pass=>
|
3407
|
+
[{:test=>"kind_of? String and FORTRAN_BOOLS.include? self",
|
3408
|
+
:explanation=>
|
3409
|
+
"This variable must be a fortran boolean. (In Ruby this is represented as a string: e.g. '.true.')"}],
|
3410
|
+
:type=>:Fortran_Bool},
|
3411
|
+
:write_omega_all=>
|
3412
|
+
{:should_include=>"true",
|
3413
|
+
:description=>"",
|
3414
|
+
:help=>"",
|
3415
|
+
:code_name=>:write_omega_all,
|
3416
|
+
:must_pass=>
|
3417
|
+
[{:test=>"kind_of? String and FORTRAN_BOOLS.include? self",
|
3418
|
+
:explanation=>
|
3419
|
+
"This variable must be a fortran boolean. (In Ruby this is represented as a string: e.g. '.true.')"}],
|
3420
|
+
:type=>:Fortran_Bool},
|
3421
|
+
:navg=>
|
3422
|
+
{:should_include=>"true",
|
3423
|
+
:description=>"",
|
3424
|
+
:help=>"",
|
3425
|
+
:code_name=>:navg,
|
3426
|
+
:must_pass=>
|
3427
|
+
[{:test=>"kind_of? Integer",
|
3428
|
+
:explanation=>"This variable must be an integer."}],
|
3429
|
+
:type=>:Integer},
|
3430
|
+
:igomega=>
|
3431
|
+
{:should_include=>"true",
|
3432
|
+
:description=>"",
|
3433
|
+
:help=>"",
|
3434
|
+
:code_name=>:igomega,
|
3435
|
+
:must_pass=>
|
3436
|
+
[{:test=>"kind_of? Integer",
|
3437
|
+
:explanation=>"This variable must be an integer."}],
|
3438
|
+
:type=>:Integer},
|
3439
|
+
:omegatinst=>
|
3440
|
+
{:should_include=>"true",
|
3441
|
+
:description=>"",
|
3442
|
+
:help=>"",
|
3443
|
+
:code_name=>:omegatinst,
|
3444
|
+
:must_pass=>
|
3445
|
+
[{:test=>"kind_of? Numeric",
|
3446
|
+
:explanation=>
|
3447
|
+
"This variable must be a floating point number (an integer is also acceptable: it will be converted into a floating point number)."}],
|
3448
|
+
:type=>:Float},
|
3449
|
+
:omegatol=>
|
3450
|
+
{:should_include=>"true",
|
3451
|
+
:description=>"",
|
3452
|
+
:help=>"",
|
3453
|
+
:code_name=>:omegatol,
|
3454
|
+
:must_pass=>
|
3455
|
+
[{:test=>"kind_of? Numeric",
|
3456
|
+
:explanation=>
|
3457
|
+
"This variable must be a floating point number (an integer is also acceptable: it will be converted into a floating point number)."}],
|
3458
|
+
:type=>:Float},
|
3459
|
+
:exit_when_converged=>
|
3460
|
+
{:should_include=>"true",
|
3461
|
+
:description=>"",
|
3462
|
+
:help=>"",
|
3463
|
+
:code_name=>:exit_when_converged,
|
3464
|
+
:must_pass=>
|
3465
|
+
[{:test=>"kind_of? String and FORTRAN_BOOLS.include? self",
|
3466
|
+
:explanation=>
|
3467
|
+
"This variable must be a fortran boolean. (In Ruby this is represented as a string: e.g. '.true.')"}],
|
3468
|
+
:type=>:Fortran_Bool}}},
|
3469
|
+
:solver=>
|
3470
|
+
{:description=>"",
|
3471
|
+
:should_include=>"true",
|
3472
|
+
:variables=>
|
3473
|
+
{:equation_set=>
|
3474
|
+
{:should_include=>"true",
|
3475
|
+
:description=>"0 for gyrokinetic, 1 for Vlasov-Poisson",
|
3476
|
+
:help=>
|
3477
|
+
"Sets the equation set to be solved:\n**0 for gyrokinetic equations\n**1 for (1+1)D Vlasov-Poisson",
|
3478
|
+
:code_name=>:equation_set,
|
2885
3479
|
:must_pass=>
|
2886
3480
|
[{:test=>"kind_of? Integer",
|
2887
3481
|
:explanation=>"This variable must be an integer."}],
|
data/lib/gs2crmod/spectrogk.rb
CHANGED
@@ -141,7 +141,7 @@ def self.defaults_file_header
|
|
141
141
|
EOF1
|
142
142
|
end
|
143
143
|
|
144
|
-
@source_code_subfolders = ['utils']
|
144
|
+
@source_code_subfolders = ['utils', 'diagnostics', 'easy_namelists']
|
145
145
|
|
146
146
|
folder = File.dirname(File.expand_path(__FILE__)) # i.e. the directory this file is in
|
147
147
|
|
@@ -0,0 +1,18 @@
|
|
1
|
+
require 'rubygems'
|
2
|
+
require 'bundler'
|
3
|
+
begin
|
4
|
+
Bundler.setup(:default, :development)
|
5
|
+
rescue Bundler::BundlerError => e
|
6
|
+
$stderr.puts e.message
|
7
|
+
$stderr.puts "Run `bundle install` to install missing gems"
|
8
|
+
exit e.status_code
|
9
|
+
end
|
10
|
+
require 'test/unit'
|
11
|
+
require 'shoulda'
|
12
|
+
|
13
|
+
$LOAD_PATH.unshift(File.join(File.dirname(__FILE__), '..', 'lib'))
|
14
|
+
$LOAD_PATH.unshift(File.dirname(__FILE__))
|
15
|
+
require 'coderunner'
|
16
|
+
|
17
|
+
class Test::Unit::TestCase
|
18
|
+
end
|
metadata
CHANGED
@@ -1,7 +1,7 @@
|
|
1
1
|
--- !ruby/object:Gem::Specification
|
2
2
|
name: gs2crmod
|
3
3
|
version: !ruby/object:Gem::Version
|
4
|
-
version: 0.11.
|
4
|
+
version: 0.11.4
|
5
5
|
prerelease:
|
6
6
|
platform: ruby
|
7
7
|
authors:
|
@@ -10,7 +10,7 @@ authors:
|
|
10
10
|
autorequire:
|
11
11
|
bindir: bin
|
12
12
|
cert_chain: []
|
13
|
-
date: 2014-01-
|
13
|
+
date: 2014-01-28 00:00:00.000000000 Z
|
14
14
|
dependencies:
|
15
15
|
- !ruby/object:Gem::Dependency
|
16
16
|
name: coderunner
|
@@ -187,6 +187,8 @@ files:
|
|
187
187
|
- sync_mediawiki/sync_mediawiki.rb
|
188
188
|
- sync_variables/helper.rb
|
189
189
|
- sync_variables/sync_variables.rb
|
190
|
+
- sync_variables_sgk/helper.rb
|
191
|
+
- sync_variables_sgk/sync_variables_sgk.rb
|
190
192
|
- test/agk_slab_itg_low_kperp.in
|
191
193
|
- test/agk_slab_itg_low_kperp.tgz
|
192
194
|
- test/cyclone_low_res.in
|