gs2crmod 0.11.3 → 0.11.4

data/Rakefile

@@ -53,6 +53,11 @@ Rake::TestTask.new(:sync_variables) do |test|
   test.pattern = 'sync_variables/sync_variables.rb'
   test.verbose = true
 end
+Rake::TestTask.new(:sync_variables_sgk) do |test|
+  test.libs << 'lib' << 'sync_variables_sgk'
+  test.pattern = 'sync_variables_sgk/sync_variables_sgk.rb'
+  test.verbose = true
+end
 Rake::TestTask.new(:sync_mediawiki) do |test|
   test.libs << 'lib' << 'sync_mediawiki'
   test.pattern = 'sync_mediawiki/sync_mediawiki.rb'

data/VERSION

@@ -1 +1 @@
-0.11.3
+0.11.4

data/gs2crmod.gemspec

@@ -5,11 +5,11 @@
 
 Gem::Specification.new do |s|
   s.name = "gs2crmod"
-  s.version = "0.11.3"
+  s.version = "0.11.4"
 
   s.required_rubygems_version = Gem::Requirement.new(">= 0") if s.respond_to? :required_rubygems_version=
   s.authors = ["Edmund Highcock", "Ferdinand van Wyk"]
-  s.date = "2014-01-20"
+  s.date = "2014-01-28"
   s.description = "GS2 is a gyrokinetic flux tube initial value turbulence code which can be used for fusion or astrophysical plasmas. CodeRunner is a framework for the automated running and analysis of large simulations. This module allows GS2 (and its sister code AstroGK) to harness the power of the CodeRunner framework."
   s.email = "edmundhighcock@sourceforge.net"
   s.extensions = ["ext/extconf.rb"]
@@ -69,6 +69,8 @@ Gem::Specification.new do |s|
     "sync_mediawiki/sync_mediawiki.rb",
     "sync_variables/helper.rb",
     "sync_variables/sync_variables.rb",
+    "sync_variables_sgk/helper.rb",
+    "sync_variables_sgk/sync_variables_sgk.rb",
     "test/agk_slab_itg_low_kperp.in",
     "test/agk_slab_itg_low_kperp.tgz",
     "test/cyclone_low_res.in",

data/lib/gs2crmod/spectrogk/namelists.rb

@@ -556,7 +556,103 @@
         [{:test=>"kind_of? String and FORTRAN_BOOLS.include? self",
           :explanation=>
            "This variable must be a fortran boolean. (In Ruby this is represented as a string: e.g. '.true.')"}],
-       :type=>:Fortran_Bool}}},
+       :type=>:Fortran_Bool},
+     :debug=>
+      {:should_include=>"true",
+       :description=>"",
+       :help=>"",
+       :code_name=>:debug,
+       :must_pass=>
+        [{:test=>"kind_of? String and FORTRAN_BOOLS.include? self",
+          :explanation=>
+           "This variable must be a fortran boolean. (In Ruby this is represented as a string: e.g. '.true.')"}],
+       :type=>:Fortran_Bool},
+     :do_write_dynfields=>
+      {:should_include=>"true",
+       :description=>"",
+       :help=>"",
+       :code_name=>:do_write_dynfields,
+       :must_pass=>
+        [{:test=>"kind_of? String and FORTRAN_BOOLS.include? self",
+          :explanation=>
+           "This variable must be a fortran boolean. (In Ruby this is represented as a string: e.g. '.true.')"}],
+       :type=>:Fortran_Bool},
+     :nwrite_dyn=>
+      {:should_include=>"true",
+       :description=>"",
+       :help=>"",
+       :code_name=>:nwrite_dyn,
+       :must_pass=>
+        [{:test=>"kind_of? Integer",
+          :explanation=>"This variable must be an integer."}],
+       :type=>:Integer},
+     :debug_moi=>
+      {:should_include=>"true",
+       :description=>"",
+       :help=>"",
+       :code_name=>:debug_moi,
+       :must_pass=>
+        [{:test=>"kind_of? String and FORTRAN_BOOLS.include? self",
+          :explanation=>
+           "This variable must be a fortran boolean. (In Ruby this is represented as a string: e.g. '.true.')"}],
+       :type=>:Fortran_Bool},
+     :write_moi=>
+      {:should_include=>"true",
+       :description=>"",
+       :help=>"",
+       :code_name=>:write_moi,
+       :must_pass=>
+        [{:test=>"kind_of? String and FORTRAN_BOOLS.include? self",
+          :explanation=>
+           "This variable must be a fortran boolean. (In Ruby this is represented as a string: e.g. '.true.')"}],
+       :type=>:Fortran_Bool},
+     :moi_no_fft=>
+      {:should_include=>"true",
+       :description=>"",
+       :help=>"",
+       :code_name=>:moi_no_fft,
+       :must_pass=>
+        [{:test=>"kind_of? String and FORTRAN_BOOLS.include? self",
+          :explanation=>
+           "This variable must be a fortran boolean. (In Ruby this is represented as a string: e.g. '.true.')"}],
+       :type=>:Fortran_Bool},
+     :n_modes_of_interest=>
+      {:should_include=>"true",
+       :description=>"",
+       :help=>"",
+       :code_name=>:n_modes_of_interest,
+       :must_pass=>
+        [{:test=>"kind_of? Integer",
+          :explanation=>"This variable must be an integer."}],
+       :type=>:Integer},
+     :write_freq=>
+      {:should_include=>"true",
+       :description=>"",
+       :help=>"",
+       :code_name=>:write_freq,
+       :must_pass=>
+        [{:test=>"kind_of? String and FORTRAN_BOOLS.include? self",
+          :explanation=>
+           "This variable must be a fortran boolean. (In Ruby this is represented as a string: e.g. '.true.')"}],
+       :type=>:Fortran_Bool},
+     :nwrite_freq=>
+      {:should_include=>"true",
+       :description=>"",
+       :help=>"",
+       :code_name=>:nwrite_freq,
+       :must_pass=>
+        [{:test=>"kind_of? Integer",
+          :explanation=>"This variable must be an integer."}],
+       :type=>:Integer},
+     :nk_freq=>
+      {:should_include=>"true",
+       :description=>"",
+       :help=>"",
+       :code_name=>:nk_freq,
+       :must_pass=>
+        [{:test=>"kind_of? Integer",
+          :explanation=>"This variable must be an integer."}],
+       :type=>:Integer}}},
  :equil_io=>
   {:description=>"",
    :should_include=>"true",
@@ -757,6 +853,34 @@
        :help=>nil,
        :tests=>["Tst::FORTRAN_BOOL"],
        :code_name=>:restarting,
+       :must_pass=>
+        [{:test=>"kind_of? String and FORTRAN_BOOLS.include? self",
+          :explanation=>
+           "This variable must be a fortran boolean. (In Ruby this is represented as a string: e.g. '.true.')"}],
+       :type=>:Fortran_Bool},
+     :seed1=>
+      {:should_include=>"true",
+       :description=>nil,
+       :help=>nil,
+       :code_name=>:seed1,
+       :must_pass=>
+        [{:test=>"kind_of? Integer",
+          :explanation=>"This variable must be an integer."}],
+       :type=>:Integer},
+     :seed2=>
+      {:should_include=>"true",
+       :description=>"",
+       :help=>"",
+       :code_name=>:seed2,
+       :must_pass=>
+        [{:test=>"kind_of? Integer",
+          :explanation=>"This variable must be an integer."}],
+       :type=>:Integer},
+     :randomize=>
+      {:should_include=>"true",
+       :description=>"",
+       :help=>"",
+       :code_name=>:randomize,
        :must_pass=>
         [{:test=>"kind_of? String and FORTRAN_BOOLS.include? self",
           :explanation=>
@@ -793,8 +917,17 @@
        :must_pass=>
         [{:test=>"kind_of? Integer",
           :explanation=>"This variable must be an integer."}],
-       :type=>:Integer}},
-   :enumerator=>{:name=>:nk_stir, :estimated_value=>10}},
+       :type=>:Integer},
+     :mode_amplitude=>
+      {:should_include=>"true",
+       :description=>"",
+       :help=>"",
+       :code_name=>:mode_amplitude,
+       :must_pass=>
+        [{:test=>"kind_of? Numeric",
+          :explanation=>
+           "This variable must be a floating point number (an integer is also acceptable: it will be converted into a floating point number)."}],
+       :type=>:Float}}},
  :collisions_knobs=>
   {:description=>"",
    :should_include=>"true",
@@ -2840,9 +2973,30 @@
           :explanation=>
            "This variable must be a fortran boolean. (In Ruby this is represented as a string: e.g. '.true.')"}],
        :type=>:Fortran_Bool},
-    :phi_method=>
+     :fourier_filter=>
       {:should_include=>"true",
-       :description=>"Method of determining fields from the distribution in Hankel space",
+       :description=>"Method of Fourier filtering: hou_li, two_thirds",
+       :help=>"Method of Fourier filtering: hou_li, two_thirds",
+       :tests=>["Tst::STRING"],
+       :code_name=>:fourier_filter,
+       :must_pass=>
+        [{:test=>"kind_of? String",
+          :explanation=>"This variable must be a string."}],
+       :type=>:String},
+     :suppress_kz=>
+      {:should_include=>"true",
+       :description=>"Method of suppressing low kz modes: none, zero, krook",
+       :help=>"Method of suppressing low kz modes: none, zero, krook",
+       :tests=>["Tst::STRING"],
+       :code_name=>:suppress_kz,
+       :must_pass=>
+        [{:test=>"kind_of? String",
+          :explanation=>"This variable must be a string."}],
+       :type=>:String},
+     :phi_method=>
+      {:should_include=>"true",
+       :description=>
+        "Method of determining fields from the distribution in Hankel space",
        :help=>
         "Should the nonlinear terms be calculated?\n \n** 'none', 'default', 'off':  Do not include nonlinear terms, i.e. run a linear calculation.\n** 'on' Include nonlinear terms.",
        :tests=>["Tst::STRING"],
@@ -2882,6 +3036,446 @@
        :help=>nil,
        :tests=>["Tst::INT"],
        :code_name=>:nperiod,
+       :must_pass=>
+        [{:test=>"kind_of? Integer",
+          :explanation=>"This variable must be an integer."}],
+       :type=>:Integer}}},
+ :freq_mode=>
+  {:description=>"",
+   :should_include=>"true",
+   :variables=>
+    {:kx=>
+      {:should_include=>"true",
+       :description=>"",
+       :help=>"",
+       :code_name=>:kx,
+       :must_pass=>
+        [{:test=>"kind_of? Integer",
+          :explanation=>"This variable must be an integer."}],
+       :type=>:Integer},
+     :ky=>
+      {:should_include=>"true",
+       :description=>"",
+       :help=>"",
+       :code_name=>:ky,
+       :must_pass=>
+        [{:test=>"kind_of? Integer",
+          :explanation=>"This variable must be an integer."}],
+       :type=>:Integer}}},
+ :mode_of_interest=>
+  {:description=>"",
+   :should_include=>"true",
+   :variables=>
+    {:kx_moi=>
+      {:should_include=>"true",
+       :description=>"",
+       :help=>"",
+       :code_name=>:kx,
+       :must_pass=>
+        [{:test=>"kind_of? Integer",
+          :explanation=>"This variable must be an integer."}],
+       :type=>:Integer},
+     :ky_moi=>
+      {:should_include=>"true",
+       :description=>"",
+       :help=>"",
+       :code_name=>:ky,
+       :must_pass=>
+        [{:test=>"kind_of? Integer",
+          :explanation=>"This variable must be an integer."}],
+       :type=>:Integer},
+     :kz=>
+      {:should_include=>"true",
+       :description=>"",
+       :help=>"",
+       :code_name=>:kz,
+       :must_pass=>
+        [{:test=>"kind_of? Integer",
+          :explanation=>"This variable must be an integer."}],
+       :type=>:Integer}}},
+ :gk_eigen_knobs=>
+  {:description=>"",
+   :should_include=>"true",
+   :variables=>
+    {:nk_eigen=>
+      {:should_include=>"true",
+       :description=>"",
+       :help=>"",
+       :code_name=>:nk_eigen,
+       :must_pass=>
+        [{:test=>"kind_of? Integer",
+          :explanation=>"This variable must be an integer."}],
+       :type=>:Integer},
+     :prec=>
+      {:should_include=>"true",
+       :description=>"",
+       :help=>"",
+       :code_name=>:prec,
+       :must_pass=>
+        [{:test=>"kind_of? Numeric",
+          :explanation=>
+           "This variable must be a floating point number (an integer is also acceptable: it will be converted into a floating point number)."}],
+       :type=>:Float},
+     :tol=>
+      {:should_include=>"true",
+       :description=>"",
+       :help=>"",
+       :code_name=>:tol,
+       :must_pass=>
+        [{:test=>"kind_of? Numeric",
+          :explanation=>
+           "This variable must be a floating point number (an integer is also acceptable: it will be converted into a floating point number)."}],
+       :type=>:Float},
+     :gk_write_disp=>
+      {:should_include=>"true",
+       :description=>"",
+       :help=>"",
+       :code_name=>:gk_write_disp,
+       :must_pass=>
+        [{:test=>"kind_of? String and FORTRAN_BOOLS.include? self",
+          :explanation=>
+           "This variable must be a fortran boolean. (In Ruby this is represented as a string: e.g. '.true.')"}],
+       :type=>:Fortran_Bool},
+     :gk_write_g=>
+      {:should_include=>"true",
+       :description=>"",
+       :help=>"",
+       :code_name=>:gk_write_g,
+       :must_pass=>
+        [{:test=>"kind_of? String and FORTRAN_BOOLS.include? self",
+          :explanation=>
+           "This variable must be a fortran boolean. (In Ruby this is represented as a string: e.g. '.true.')"}],
+       :type=>:Fortran_Bool},
+     :nwrite_eigfields=>
+      {:should_include=>"true",
+       :description=>"",
+       :help=>"",
+       :code_name=>:nwrite_eigfields,
+       :must_pass=>
+        [{:test=>"kind_of? Integer",
+          :explanation=>"This variable must be an integer."}],
+       :type=>:Integer},
+     :eigfields_gnuplot_spacing=>
+      {:should_include=>"true",
+       :description=>"",
+       :help=>"",
+       :code_name=>:eigfields_gnuplot_spacing,
+       :must_pass=>
+        [{:test=>"kind_of? String and FORTRAN_BOOLS.include? self",
+          :explanation=>
+           "This variable must be a fortran boolean. (In Ruby this is represented as a string: e.g. '.true.')"}],
+       :type=>:Fortran_Bool},
+     :eigfields_immediate_write=>
+      {:should_include=>"true",
+       :description=>"",
+       :help=>"",
+       :code_name=>:eigfields_immediate_write,
+       :must_pass=>
+        [{:test=>"kind_of? String and FORTRAN_BOOLS.include? self",
+          :explanation=>
+           "This variable must be a fortran boolean. (In Ruby this is represented as a string: e.g. '.true.')"}],
+       :type=>:Fortran_Bool}}},
+ :gk_eigen=>
+  {:description=>"",
+   :should_include=>"true",
+   :variables=>
+    {:kx_eigen=>
+      {:should_include=>"true",
+       :description=>"",
+       :help=>"",
+       :code_name=>:kx,
+       :must_pass=>
+        [{:test=>"kind_of? Integer",
+          :explanation=>"This variable must be an integer."}],
+       :type=>:Integer},
+     :ky_eigen=>
+      {:should_include=>"true",
+       :description=>"",
+       :help=>"",
+       :code_name=>:ky,
+       :must_pass=>
+        [{:test=>"kind_of? Integer",
+          :explanation=>"This variable must be an integer."}],
+       :type=>:Integer},
+     :kz_eigen=>
+      {:should_include=>"true",
+       :description=>"",
+       :help=>"",
+       :code_name=>:kz,
+       :must_pass=>
+        [{:test=>"kind_of? Integer",
+          :explanation=>"This variable must be an integer."}],
+       :type=>:Integer},
+     :amp=>
+      {:should_include=>"true",
+       :description=>"",
+       :help=>"",
+       :code_name=>:amp,
+       :must_pass=>
+        [{:test=>"kind_of? Numeric",
+          :explanation=>
+           "This variable must be a floating point number (an integer is also acceptable: it will be converted into a floating point number)."}],
+       :type=>:Float},
+     :phase=>
+      {:should_include=>"true",
+       :description=>"",
+       :help=>"",
+       :code_name=>:phase,
+       :must_pass=>
+        [{:test=>"kind_of? Numeric",
+          :explanation=>
+           "This variable must be a floating point number (an integer is also acceptable: it will be converted into a floating point number)."}],
+       :type=>:Float},
+     :om_est=>
+      {:should_include=>"true",
+       :description=>"",
+       :help=>"",
+       :code_name=>:om_est,
+       :must_pass=>
+        [{:test=>"kind_of? Complex",
+          :explanation=>"This variable must be a complex number."}],
+       :type=>:Complex},
+     :prec_eigen=>
+      {:should_include=>"true",
+       :description=>"",
+       :help=>"",
+       :code_name=>:prec,
+       :must_pass=>
+        [{:test=>"kind_of? Numeric",
+          :explanation=>
+           "This variable must be a floating point number (an integer is also acceptable: it will be converted into a floating point number)."}],
+       :type=>:Float},
+     :tol_eigen=>
+      {:should_include=>"true",
+       :description=>"",
+       :help=>"",
+       :code_name=>:tol,
+       :must_pass=>
+        [{:test=>"kind_of? Numeric",
+          :explanation=>
+           "This variable must be a floating point number (an integer is also acceptable: it will be converted into a floating point number)."}],
+       :type=>:Float},
+     :localized=>
+      {:should_include=>"true",
+       :description=>"",
+       :help=>"",
+       :code_name=>:localized,
+       :must_pass=>
+        [{:test=>"kind_of? Numeric",
+          :explanation=>
+           "This variable must be a floating point number (an integer is also acceptable: it will be converted into a floating point number)."}],
+       :type=>:Float},
+     :z0_eigen=>
+      {:should_include=>"true",
+       :description=>"",
+       :help=>"",
+       :code_name=>:z0,
+       :must_pass=>
+        [{:test=>"kind_of? Numeric",
+          :explanation=>
+           "This variable must be a floating point number (an integer is also acceptable: it will be converted into a floating point number)."}],
+       :type=>:Float},
+     :deltz=>
+      {:should_include=>"true",
+       :description=>"",
+       :help=>"",
+       :code_name=>:deltz,
+       :must_pass=>
+        [{:test=>"kind_of? Numeric",
+          :explanation=>
+           "This variable must be a floating point number (an integer is also acceptable: it will be converted into a floating point number)."}],
+       :type=>:Float},
+     :power=>
+      {:should_include=>"true",
+       :description=>"",
+       :help=>"",
+       :code_name=>:power,
+       :must_pass=>
+        [{:test=>"kind_of? Numeric",
+          :explanation=>
+           "This variable must be a floating point number (an integer is also acceptable: it will be converted into a floating point number)."}],
+       :type=>:Float}}},
+ :diagnostics_config=>
+  {:description=>"",
+   :should_include=>"true",
+   :variables=>
+    {:nwrite=>
+      {:should_include=>"true",
+       :description=>"",
+       :help=>"",
+       :code_name=>:nwrite,
+       :must_pass=>
+        [{:test=>"kind_of? Integer",
+          :explanation=>"This variable must be an integer."}],
+       :type=>:Integer},
+     :write_any=>
+      {:should_include=>"true",
+       :description=>"",
+       :help=>"",
+       :code_name=>:write_any,
+       :must_pass=>
+        [{:test=>"kind_of? String and FORTRAN_BOOLS.include? self",
+          :explanation=>
+           "This variable must be a fortran boolean. (In Ruby this is represented as a string: e.g. '.true.')"}],
+       :type=>:Fortran_Bool},
+     :write_fields=>
+      {:should_include=>"true",
+       :description=>"",
+       :help=>"",
+       :code_name=>:write_fields,
+       :must_pass=>
+        [{:test=>"kind_of? String and FORTRAN_BOOLS.include? self",
+          :explanation=>
+           "This variable must be a fortran boolean. (In Ruby this is represented as a string: e.g. '.true.')"}],
+       :type=>:Fortran_Bool},
+     :write_phi_over_time=>
+      {:should_include=>"true",
+       :description=>"",
+       :help=>"",
+       :code_name=>:write_phi_over_time,
+       :must_pass=>
+        [{:test=>"kind_of? String and FORTRAN_BOOLS.include? self",
+          :explanation=>
+           "This variable must be a fortran boolean. (In Ruby this is represented as a string: e.g. '.true.')"}],
+       :type=>:Fortran_Bool},
+     :write_apar_over_time=>
+      {:should_include=>"true",
+       :description=>"",
+       :help=>"",
+       :code_name=>:write_apar_over_time,
+       :must_pass=>
+        [{:test=>"kind_of? String and FORTRAN_BOOLS.include? self",
+          :explanation=>
+           "This variable must be a fortran boolean. (In Ruby this is represented as a string: e.g. '.true.')"}],
+       :type=>:Fortran_Bool},
+     :write_bpar_over_time=>
+      {:should_include=>"true",
+       :description=>"",
+       :help=>"",
+       :code_name=>:write_bpar_over_time,
+       :must_pass=>
+        [{:test=>"kind_of? String and FORTRAN_BOOLS.include? self",
+          :explanation=>
+           "This variable must be a fortran boolean. (In Ruby this is represented as a string: e.g. '.true.')"}],
+       :type=>:Fortran_Bool},
+     :write_dist_fn=>
+      {:should_include=>"true",
+       :description=>"",
+       :help=>"",
+       :code_name=>:write_dist_fn,
+       :must_pass=>
+        [{:test=>"kind_of? String and FORTRAN_BOOLS.include? self",
+          :explanation=>
+           "This variable must be a fortran boolean. (In Ruby this is represented as a string: e.g. '.true.')"}],
+       :type=>:Fortran_Bool},
+     :write_dist_fn_over_time=>
+      {:should_include=>"true",
+       :description=>"",
+       :help=>"",
+       :code_name=>:write_dist_fn_over_time,
+       :must_pass=>
+        [{:test=>"kind_of? String and FORTRAN_BOOLS.include? self",
+          :explanation=>
+           "This variable must be a fortran boolean. (In Ruby this is represented as a string: e.g. '.true.')"}],
+       :type=>:Fortran_Bool},
+     :write_fluxes=>
+      {:should_include=>"true",
+       :description=>"",
+       :help=>"",
+       :code_name=>:write_fluxes,
+       :must_pass=>
+        [{:test=>"kind_of? String and FORTRAN_BOOLS.include? self",
+          :explanation=>
+           "This variable must be a fortran boolean. (In Ruby this is represented as a string: e.g. '.true.')"}],
+       :type=>:Fortran_Bool},
+     :write_fluxes_by_mode=>
+      {:should_include=>"true",
+       :description=>"",
+       :help=>"",
+       :code_name=>:write_fluxes_by_mode,
+       :must_pass=>
+        [{:test=>"kind_of? String and FORTRAN_BOOLS.include? self",
+          :explanation=>
+           "This variable must be a fortran boolean. (In Ruby this is represented as a string: e.g. '.true.')"}],
+       :type=>:Fortran_Bool},
+     :write_omega=>
+      {:should_include=>"true",
+       :description=>"",
+       :help=>"",
+       :code_name=>:write_omega,
+       :must_pass=>
+        [{:test=>"kind_of? String and FORTRAN_BOOLS.include? self",
+          :explanation=>
+           "This variable must be a fortran boolean. (In Ruby this is represented as a string: e.g. '.true.')"}],
+       :type=>:Fortran_Bool},
+     :write_omega_all=>
+      {:should_include=>"true",
+       :description=>"",
+       :help=>"",
+       :code_name=>:write_omega_all,
+       :must_pass=>
+        [{:test=>"kind_of? String and FORTRAN_BOOLS.include? self",
+          :explanation=>
+           "This variable must be a fortran boolean. (In Ruby this is represented as a string: e.g. '.true.')"}],
+       :type=>:Fortran_Bool},
+     :navg=>
+      {:should_include=>"true",
+       :description=>"",
+       :help=>"",
+       :code_name=>:navg,
+       :must_pass=>
+        [{:test=>"kind_of? Integer",
+          :explanation=>"This variable must be an integer."}],
+       :type=>:Integer},
+     :igomega=>
+      {:should_include=>"true",
+       :description=>"",
+       :help=>"",
+       :code_name=>:igomega,
+       :must_pass=>
+        [{:test=>"kind_of? Integer",
+          :explanation=>"This variable must be an integer."}],
+       :type=>:Integer},
+     :omegatinst=>
+      {:should_include=>"true",
+       :description=>"",
+       :help=>"",
+       :code_name=>:omegatinst,
+       :must_pass=>
+        [{:test=>"kind_of? Numeric",
+          :explanation=>
+           "This variable must be a floating point number (an integer is also acceptable: it will be converted into a floating point number)."}],
+       :type=>:Float},
+     :omegatol=>
+      {:should_include=>"true",
+       :description=>"",
+       :help=>"",
+       :code_name=>:omegatol,
+       :must_pass=>
+        [{:test=>"kind_of? Numeric",
+          :explanation=>
+           "This variable must be a floating point number (an integer is also acceptable: it will be converted into a floating point number)."}],
+       :type=>:Float},
+     :exit_when_converged=>
+      {:should_include=>"true",
+       :description=>"",
+       :help=>"",
+       :code_name=>:exit_when_converged,
+       :must_pass=>
+        [{:test=>"kind_of? String and FORTRAN_BOOLS.include? self",
+          :explanation=>
+           "This variable must be a fortran boolean. (In Ruby this is represented as a string: e.g. '.true.')"}],
+       :type=>:Fortran_Bool}}},
+ :solver=>
+  {:description=>"",
+   :should_include=>"true",
+   :variables=>
+    {:equation_set=>
+      {:should_include=>"true",
+       :description=>"0 for gyrokinetic, 1 for Vlasov-Poisson",
+       :help=>
+        "Sets the equation set to be solved:\n**0 for gyrokinetic equations\n**1 for (1+1)D Vlasov-Poisson",
+       :code_name=>:equation_set,
        :must_pass=>
         [{:test=>"kind_of? Integer",
           :explanation=>"This variable must be an integer."}],

data/lib/gs2crmod/spectrogk.rb

@@ -141,7 +141,7 @@ def self.defaults_file_header
 EOF1
 end
 
-@source_code_subfolders = ['utils']
+@source_code_subfolders = ['utils', 'diagnostics', 'easy_namelists']
 
 folder = File.dirname(File.expand_path(__FILE__)) # i.e. the directory this file is in
 

data/sync_variables_sgk/helper.rb

@@ -0,0 +1,18 @@
+require 'rubygems'
+require 'bundler'
+begin
+  Bundler.setup(:default, :development)
+rescue Bundler::BundlerError => e
+  $stderr.puts e.message
+  $stderr.puts "Run `bundle install` to install missing gems"
+  exit e.status_code
+end
+require 'test/unit'
+require 'shoulda'
+
+$LOAD_PATH.unshift(File.join(File.dirname(__FILE__), '..', 'lib'))
+$LOAD_PATH.unshift(File.dirname(__FILE__))
+require 'coderunner'
+
+class Test::Unit::TestCase
+end

data/sync_variables_sgk/sync_variables_sgk.rb

@@ -0,0 +1,5 @@
+require 'helper'
+CodeRunner.setup_run_class('gs2',modlet:'spectrogk')
+#CodeRunner::Gs2::Spectrogk.update_defaults_from_source_code(ENV['SGK_SOURCE'])
+CodeRunner::Gs2::Spectrogk.synchronise_variables(ENV['SGK_SOURCE'])
+

metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: gs2crmod
 version: !ruby/object:Gem::Version
-  version: 0.11.3
+  version: 0.11.4
   prerelease: 
 platform: ruby
 authors:
@@ -10,7 +10,7 @@ authors:
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2014-01-20 00:00:00.000000000 Z
+date: 2014-01-28 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: coderunner
@@ -187,6 +187,8 @@ files:
 - sync_mediawiki/sync_mediawiki.rb
 - sync_variables/helper.rb
 - sync_variables/sync_variables.rb
+- sync_variables_sgk/helper.rb
+- sync_variables_sgk/sync_variables_sgk.rb
 - test/agk_slab_itg_low_kperp.in
 - test/agk_slab_itg_low_kperp.tgz
 - test/cyclone_low_res.in