gs2crmod 0.11.3 → 0.11.4

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
data/Rakefile CHANGED
@@ -53,6 +53,11 @@ Rake::TestTask.new(:sync_variables) do |test|
53
53
  test.pattern = 'sync_variables/sync_variables.rb'
54
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  test.verbose = true
55
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  end
56
+ Rake::TestTask.new(:sync_variables_sgk) do |test|
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+ test.libs << 'lib' << 'sync_variables_sgk'
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+ test.pattern = 'sync_variables_sgk/sync_variables_sgk.rb'
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+ test.verbose = true
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+ end
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  Rake::TestTask.new(:sync_mediawiki) do |test|
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  test.libs << 'lib' << 'sync_mediawiki'
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  test.pattern = 'sync_mediawiki/sync_mediawiki.rb'
data/VERSION CHANGED
@@ -1 +1 @@
1
- 0.11.3
1
+ 0.11.4
data/gs2crmod.gemspec CHANGED
@@ -5,11 +5,11 @@
5
5
 
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  Gem::Specification.new do |s|
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  s.name = "gs2crmod"
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- s.version = "0.11.3"
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+ s.version = "0.11.4"
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  s.required_rubygems_version = Gem::Requirement.new(">= 0") if s.respond_to? :required_rubygems_version=
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  s.authors = ["Edmund Highcock", "Ferdinand van Wyk"]
12
- s.date = "2014-01-20"
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+ s.date = "2014-01-28"
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  s.description = "GS2 is a gyrokinetic flux tube initial value turbulence code which can be used for fusion or astrophysical plasmas. CodeRunner is a framework for the automated running and analysis of large simulations. This module allows GS2 (and its sister code AstroGK) to harness the power of the CodeRunner framework."
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  s.email = "edmundhighcock@sourceforge.net"
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  s.extensions = ["ext/extconf.rb"]
@@ -69,6 +69,8 @@ Gem::Specification.new do |s|
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  "sync_mediawiki/sync_mediawiki.rb",
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  "sync_variables/helper.rb",
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  "sync_variables/sync_variables.rb",
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+ "sync_variables_sgk/helper.rb",
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+ "sync_variables_sgk/sync_variables_sgk.rb",
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  "test/agk_slab_itg_low_kperp.in",
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  "test/agk_slab_itg_low_kperp.tgz",
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  "test/cyclone_low_res.in",
@@ -556,7 +556,103 @@
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  [{:test=>"kind_of? String and FORTRAN_BOOLS.include? self",
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  :explanation=>
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  "This variable must be a fortran boolean. (In Ruby this is represented as a string: e.g. '.true.')"}],
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- :type=>:Fortran_Bool}}},
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+ :type=>:Fortran_Bool},
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+ :debug=>
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+ {:should_include=>"true",
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+ :description=>"",
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+ :help=>"",
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+ :code_name=>:debug,
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+ :must_pass=>
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+ [{:test=>"kind_of? String and FORTRAN_BOOLS.include? self",
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+ :explanation=>
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+ "This variable must be a fortran boolean. (In Ruby this is represented as a string: e.g. '.true.')"}],
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+ :type=>:Fortran_Bool},
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+ :do_write_dynfields=>
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+ {:should_include=>"true",
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+ :description=>"",
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+ :help=>"",
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+ :code_name=>:do_write_dynfields,
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+ :must_pass=>
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+ [{:test=>"kind_of? String and FORTRAN_BOOLS.include? self",
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+ :explanation=>
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+ "This variable must be a fortran boolean. (In Ruby this is represented as a string: e.g. '.true.')"}],
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+ :type=>:Fortran_Bool},
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+ :nwrite_dyn=>
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+ {:should_include=>"true",
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+ :description=>"",
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+ :help=>"",
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+ :code_name=>:nwrite_dyn,
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+ :must_pass=>
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+ [{:test=>"kind_of? Integer",
587
+ :explanation=>"This variable must be an integer."}],
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+ :type=>:Integer},
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+ :debug_moi=>
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+ {:should_include=>"true",
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+ :description=>"",
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+ :help=>"",
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+ :code_name=>:debug_moi,
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+ :must_pass=>
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+ [{:test=>"kind_of? String and FORTRAN_BOOLS.include? self",
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+ :explanation=>
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+ "This variable must be a fortran boolean. (In Ruby this is represented as a string: e.g. '.true.')"}],
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+ :type=>:Fortran_Bool},
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+ :write_moi=>
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+ {:should_include=>"true",
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+ :description=>"",
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+ :help=>"",
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+ :code_name=>:write_moi,
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+ :must_pass=>
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+ [{:test=>"kind_of? String and FORTRAN_BOOLS.include? self",
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+ :explanation=>
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+ "This variable must be a fortran boolean. (In Ruby this is represented as a string: e.g. '.true.')"}],
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+ :type=>:Fortran_Bool},
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+ :moi_no_fft=>
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+ {:should_include=>"true",
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+ :description=>"",
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+ :help=>"",
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+ :code_name=>:moi_no_fft,
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+ :must_pass=>
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+ [{:test=>"kind_of? String and FORTRAN_BOOLS.include? self",
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+ :explanation=>
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+ "This variable must be a fortran boolean. (In Ruby this is represented as a string: e.g. '.true.')"}],
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+ :type=>:Fortran_Bool},
619
+ :n_modes_of_interest=>
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+ {:should_include=>"true",
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+ :description=>"",
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+ :help=>"",
623
+ :code_name=>:n_modes_of_interest,
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+ :must_pass=>
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+ [{:test=>"kind_of? Integer",
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+ :explanation=>"This variable must be an integer."}],
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+ :type=>:Integer},
628
+ :write_freq=>
629
+ {:should_include=>"true",
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+ :description=>"",
631
+ :help=>"",
632
+ :code_name=>:write_freq,
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+ :must_pass=>
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+ [{:test=>"kind_of? String and FORTRAN_BOOLS.include? self",
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+ :explanation=>
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+ "This variable must be a fortran boolean. (In Ruby this is represented as a string: e.g. '.true.')"}],
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+ :type=>:Fortran_Bool},
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+ :nwrite_freq=>
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+ {:should_include=>"true",
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+ :description=>"",
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+ :help=>"",
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+ :code_name=>:nwrite_freq,
643
+ :must_pass=>
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+ [{:test=>"kind_of? Integer",
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+ :explanation=>"This variable must be an integer."}],
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+ :type=>:Integer},
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+ :nk_freq=>
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+ {:should_include=>"true",
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+ :description=>"",
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+ :help=>"",
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+ :code_name=>:nk_freq,
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+ :must_pass=>
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+ [{:test=>"kind_of? Integer",
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+ :explanation=>"This variable must be an integer."}],
655
+ :type=>:Integer}}},
560
656
  :equil_io=>
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657
  {:description=>"",
562
658
  :should_include=>"true",
@@ -757,6 +853,34 @@
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  :help=>nil,
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  :tests=>["Tst::FORTRAN_BOOL"],
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  :code_name=>:restarting,
856
+ :must_pass=>
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+ [{:test=>"kind_of? String and FORTRAN_BOOLS.include? self",
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+ :explanation=>
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+ "This variable must be a fortran boolean. (In Ruby this is represented as a string: e.g. '.true.')"}],
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+ :type=>:Fortran_Bool},
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+ :seed1=>
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+ {:should_include=>"true",
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+ :description=>nil,
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+ :help=>nil,
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+ :code_name=>:seed1,
866
+ :must_pass=>
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+ [{:test=>"kind_of? Integer",
868
+ :explanation=>"This variable must be an integer."}],
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+ :type=>:Integer},
870
+ :seed2=>
871
+ {:should_include=>"true",
872
+ :description=>"",
873
+ :help=>"",
874
+ :code_name=>:seed2,
875
+ :must_pass=>
876
+ [{:test=>"kind_of? Integer",
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+ :explanation=>"This variable must be an integer."}],
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+ :type=>:Integer},
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+ :randomize=>
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+ {:should_include=>"true",
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+ :description=>"",
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+ :help=>"",
883
+ :code_name=>:randomize,
760
884
  :must_pass=>
761
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  [{:test=>"kind_of? String and FORTRAN_BOOLS.include? self",
762
886
  :explanation=>
@@ -793,8 +917,17 @@
793
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  :must_pass=>
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  [{:test=>"kind_of? Integer",
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  :explanation=>"This variable must be an integer."}],
796
- :type=>:Integer}},
797
- :enumerator=>{:name=>:nk_stir, :estimated_value=>10}},
920
+ :type=>:Integer},
921
+ :mode_amplitude=>
922
+ {:should_include=>"true",
923
+ :description=>"",
924
+ :help=>"",
925
+ :code_name=>:mode_amplitude,
926
+ :must_pass=>
927
+ [{:test=>"kind_of? Numeric",
928
+ :explanation=>
929
+ "This variable must be a floating point number (an integer is also acceptable: it will be converted into a floating point number)."}],
930
+ :type=>:Float}}},
798
931
  :collisions_knobs=>
799
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  {:description=>"",
800
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  :should_include=>"true",
@@ -2840,9 +2973,30 @@
2840
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  :explanation=>
2841
2974
  "This variable must be a fortran boolean. (In Ruby this is represented as a string: e.g. '.true.')"}],
2842
2975
  :type=>:Fortran_Bool},
2843
- :phi_method=>
2976
+ :fourier_filter=>
2844
2977
  {:should_include=>"true",
2845
- :description=>"Method of determining fields from the distribution in Hankel space",
2978
+ :description=>"Method of Fourier filtering: hou_li, two_thirds",
2979
+ :help=>"Method of Fourier filtering: hou_li, two_thirds",
2980
+ :tests=>["Tst::STRING"],
2981
+ :code_name=>:fourier_filter,
2982
+ :must_pass=>
2983
+ [{:test=>"kind_of? String",
2984
+ :explanation=>"This variable must be a string."}],
2985
+ :type=>:String},
2986
+ :suppress_kz=>
2987
+ {:should_include=>"true",
2988
+ :description=>"Method of suppressing low kz modes: none, zero, krook",
2989
+ :help=>"Method of suppressing low kz modes: none, zero, krook",
2990
+ :tests=>["Tst::STRING"],
2991
+ :code_name=>:suppress_kz,
2992
+ :must_pass=>
2993
+ [{:test=>"kind_of? String",
2994
+ :explanation=>"This variable must be a string."}],
2995
+ :type=>:String},
2996
+ :phi_method=>
2997
+ {:should_include=>"true",
2998
+ :description=>
2999
+ "Method of determining fields from the distribution in Hankel space",
2846
3000
  :help=>
2847
3001
  "Should the nonlinear terms be calculated?\n \n** 'none', 'default', 'off': Do not include nonlinear terms, i.e. run a linear calculation.\n** 'on' Include nonlinear terms.",
2848
3002
  :tests=>["Tst::STRING"],
@@ -2882,6 +3036,446 @@
2882
3036
  :help=>nil,
2883
3037
  :tests=>["Tst::INT"],
2884
3038
  :code_name=>:nperiod,
3039
+ :must_pass=>
3040
+ [{:test=>"kind_of? Integer",
3041
+ :explanation=>"This variable must be an integer."}],
3042
+ :type=>:Integer}}},
3043
+ :freq_mode=>
3044
+ {:description=>"",
3045
+ :should_include=>"true",
3046
+ :variables=>
3047
+ {:kx=>
3048
+ {:should_include=>"true",
3049
+ :description=>"",
3050
+ :help=>"",
3051
+ :code_name=>:kx,
3052
+ :must_pass=>
3053
+ [{:test=>"kind_of? Integer",
3054
+ :explanation=>"This variable must be an integer."}],
3055
+ :type=>:Integer},
3056
+ :ky=>
3057
+ {:should_include=>"true",
3058
+ :description=>"",
3059
+ :help=>"",
3060
+ :code_name=>:ky,
3061
+ :must_pass=>
3062
+ [{:test=>"kind_of? Integer",
3063
+ :explanation=>"This variable must be an integer."}],
3064
+ :type=>:Integer}}},
3065
+ :mode_of_interest=>
3066
+ {:description=>"",
3067
+ :should_include=>"true",
3068
+ :variables=>
3069
+ {:kx_moi=>
3070
+ {:should_include=>"true",
3071
+ :description=>"",
3072
+ :help=>"",
3073
+ :code_name=>:kx,
3074
+ :must_pass=>
3075
+ [{:test=>"kind_of? Integer",
3076
+ :explanation=>"This variable must be an integer."}],
3077
+ :type=>:Integer},
3078
+ :ky_moi=>
3079
+ {:should_include=>"true",
3080
+ :description=>"",
3081
+ :help=>"",
3082
+ :code_name=>:ky,
3083
+ :must_pass=>
3084
+ [{:test=>"kind_of? Integer",
3085
+ :explanation=>"This variable must be an integer."}],
3086
+ :type=>:Integer},
3087
+ :kz=>
3088
+ {:should_include=>"true",
3089
+ :description=>"",
3090
+ :help=>"",
3091
+ :code_name=>:kz,
3092
+ :must_pass=>
3093
+ [{:test=>"kind_of? Integer",
3094
+ :explanation=>"This variable must be an integer."}],
3095
+ :type=>:Integer}}},
3096
+ :gk_eigen_knobs=>
3097
+ {:description=>"",
3098
+ :should_include=>"true",
3099
+ :variables=>
3100
+ {:nk_eigen=>
3101
+ {:should_include=>"true",
3102
+ :description=>"",
3103
+ :help=>"",
3104
+ :code_name=>:nk_eigen,
3105
+ :must_pass=>
3106
+ [{:test=>"kind_of? Integer",
3107
+ :explanation=>"This variable must be an integer."}],
3108
+ :type=>:Integer},
3109
+ :prec=>
3110
+ {:should_include=>"true",
3111
+ :description=>"",
3112
+ :help=>"",
3113
+ :code_name=>:prec,
3114
+ :must_pass=>
3115
+ [{:test=>"kind_of? Numeric",
3116
+ :explanation=>
3117
+ "This variable must be a floating point number (an integer is also acceptable: it will be converted into a floating point number)."}],
3118
+ :type=>:Float},
3119
+ :tol=>
3120
+ {:should_include=>"true",
3121
+ :description=>"",
3122
+ :help=>"",
3123
+ :code_name=>:tol,
3124
+ :must_pass=>
3125
+ [{:test=>"kind_of? Numeric",
3126
+ :explanation=>
3127
+ "This variable must be a floating point number (an integer is also acceptable: it will be converted into a floating point number)."}],
3128
+ :type=>:Float},
3129
+ :gk_write_disp=>
3130
+ {:should_include=>"true",
3131
+ :description=>"",
3132
+ :help=>"",
3133
+ :code_name=>:gk_write_disp,
3134
+ :must_pass=>
3135
+ [{:test=>"kind_of? String and FORTRAN_BOOLS.include? self",
3136
+ :explanation=>
3137
+ "This variable must be a fortran boolean. (In Ruby this is represented as a string: e.g. '.true.')"}],
3138
+ :type=>:Fortran_Bool},
3139
+ :gk_write_g=>
3140
+ {:should_include=>"true",
3141
+ :description=>"",
3142
+ :help=>"",
3143
+ :code_name=>:gk_write_g,
3144
+ :must_pass=>
3145
+ [{:test=>"kind_of? String and FORTRAN_BOOLS.include? self",
3146
+ :explanation=>
3147
+ "This variable must be a fortran boolean. (In Ruby this is represented as a string: e.g. '.true.')"}],
3148
+ :type=>:Fortran_Bool},
3149
+ :nwrite_eigfields=>
3150
+ {:should_include=>"true",
3151
+ :description=>"",
3152
+ :help=>"",
3153
+ :code_name=>:nwrite_eigfields,
3154
+ :must_pass=>
3155
+ [{:test=>"kind_of? Integer",
3156
+ :explanation=>"This variable must be an integer."}],
3157
+ :type=>:Integer},
3158
+ :eigfields_gnuplot_spacing=>
3159
+ {:should_include=>"true",
3160
+ :description=>"",
3161
+ :help=>"",
3162
+ :code_name=>:eigfields_gnuplot_spacing,
3163
+ :must_pass=>
3164
+ [{:test=>"kind_of? String and FORTRAN_BOOLS.include? self",
3165
+ :explanation=>
3166
+ "This variable must be a fortran boolean. (In Ruby this is represented as a string: e.g. '.true.')"}],
3167
+ :type=>:Fortran_Bool},
3168
+ :eigfields_immediate_write=>
3169
+ {:should_include=>"true",
3170
+ :description=>"",
3171
+ :help=>"",
3172
+ :code_name=>:eigfields_immediate_write,
3173
+ :must_pass=>
3174
+ [{:test=>"kind_of? String and FORTRAN_BOOLS.include? self",
3175
+ :explanation=>
3176
+ "This variable must be a fortran boolean. (In Ruby this is represented as a string: e.g. '.true.')"}],
3177
+ :type=>:Fortran_Bool}}},
3178
+ :gk_eigen=>
3179
+ {:description=>"",
3180
+ :should_include=>"true",
3181
+ :variables=>
3182
+ {:kx_eigen=>
3183
+ {:should_include=>"true",
3184
+ :description=>"",
3185
+ :help=>"",
3186
+ :code_name=>:kx,
3187
+ :must_pass=>
3188
+ [{:test=>"kind_of? Integer",
3189
+ :explanation=>"This variable must be an integer."}],
3190
+ :type=>:Integer},
3191
+ :ky_eigen=>
3192
+ {:should_include=>"true",
3193
+ :description=>"",
3194
+ :help=>"",
3195
+ :code_name=>:ky,
3196
+ :must_pass=>
3197
+ [{:test=>"kind_of? Integer",
3198
+ :explanation=>"This variable must be an integer."}],
3199
+ :type=>:Integer},
3200
+ :kz_eigen=>
3201
+ {:should_include=>"true",
3202
+ :description=>"",
3203
+ :help=>"",
3204
+ :code_name=>:kz,
3205
+ :must_pass=>
3206
+ [{:test=>"kind_of? Integer",
3207
+ :explanation=>"This variable must be an integer."}],
3208
+ :type=>:Integer},
3209
+ :amp=>
3210
+ {:should_include=>"true",
3211
+ :description=>"",
3212
+ :help=>"",
3213
+ :code_name=>:amp,
3214
+ :must_pass=>
3215
+ [{:test=>"kind_of? Numeric",
3216
+ :explanation=>
3217
+ "This variable must be a floating point number (an integer is also acceptable: it will be converted into a floating point number)."}],
3218
+ :type=>:Float},
3219
+ :phase=>
3220
+ {:should_include=>"true",
3221
+ :description=>"",
3222
+ :help=>"",
3223
+ :code_name=>:phase,
3224
+ :must_pass=>
3225
+ [{:test=>"kind_of? Numeric",
3226
+ :explanation=>
3227
+ "This variable must be a floating point number (an integer is also acceptable: it will be converted into a floating point number)."}],
3228
+ :type=>:Float},
3229
+ :om_est=>
3230
+ {:should_include=>"true",
3231
+ :description=>"",
3232
+ :help=>"",
3233
+ :code_name=>:om_est,
3234
+ :must_pass=>
3235
+ [{:test=>"kind_of? Complex",
3236
+ :explanation=>"This variable must be a complex number."}],
3237
+ :type=>:Complex},
3238
+ :prec_eigen=>
3239
+ {:should_include=>"true",
3240
+ :description=>"",
3241
+ :help=>"",
3242
+ :code_name=>:prec,
3243
+ :must_pass=>
3244
+ [{:test=>"kind_of? Numeric",
3245
+ :explanation=>
3246
+ "This variable must be a floating point number (an integer is also acceptable: it will be converted into a floating point number)."}],
3247
+ :type=>:Float},
3248
+ :tol_eigen=>
3249
+ {:should_include=>"true",
3250
+ :description=>"",
3251
+ :help=>"",
3252
+ :code_name=>:tol,
3253
+ :must_pass=>
3254
+ [{:test=>"kind_of? Numeric",
3255
+ :explanation=>
3256
+ "This variable must be a floating point number (an integer is also acceptable: it will be converted into a floating point number)."}],
3257
+ :type=>:Float},
3258
+ :localized=>
3259
+ {:should_include=>"true",
3260
+ :description=>"",
3261
+ :help=>"",
3262
+ :code_name=>:localized,
3263
+ :must_pass=>
3264
+ [{:test=>"kind_of? Numeric",
3265
+ :explanation=>
3266
+ "This variable must be a floating point number (an integer is also acceptable: it will be converted into a floating point number)."}],
3267
+ :type=>:Float},
3268
+ :z0_eigen=>
3269
+ {:should_include=>"true",
3270
+ :description=>"",
3271
+ :help=>"",
3272
+ :code_name=>:z0,
3273
+ :must_pass=>
3274
+ [{:test=>"kind_of? Numeric",
3275
+ :explanation=>
3276
+ "This variable must be a floating point number (an integer is also acceptable: it will be converted into a floating point number)."}],
3277
+ :type=>:Float},
3278
+ :deltz=>
3279
+ {:should_include=>"true",
3280
+ :description=>"",
3281
+ :help=>"",
3282
+ :code_name=>:deltz,
3283
+ :must_pass=>
3284
+ [{:test=>"kind_of? Numeric",
3285
+ :explanation=>
3286
+ "This variable must be a floating point number (an integer is also acceptable: it will be converted into a floating point number)."}],
3287
+ :type=>:Float},
3288
+ :power=>
3289
+ {:should_include=>"true",
3290
+ :description=>"",
3291
+ :help=>"",
3292
+ :code_name=>:power,
3293
+ :must_pass=>
3294
+ [{:test=>"kind_of? Numeric",
3295
+ :explanation=>
3296
+ "This variable must be a floating point number (an integer is also acceptable: it will be converted into a floating point number)."}],
3297
+ :type=>:Float}}},
3298
+ :diagnostics_config=>
3299
+ {:description=>"",
3300
+ :should_include=>"true",
3301
+ :variables=>
3302
+ {:nwrite=>
3303
+ {:should_include=>"true",
3304
+ :description=>"",
3305
+ :help=>"",
3306
+ :code_name=>:nwrite,
3307
+ :must_pass=>
3308
+ [{:test=>"kind_of? Integer",
3309
+ :explanation=>"This variable must be an integer."}],
3310
+ :type=>:Integer},
3311
+ :write_any=>
3312
+ {:should_include=>"true",
3313
+ :description=>"",
3314
+ :help=>"",
3315
+ :code_name=>:write_any,
3316
+ :must_pass=>
3317
+ [{:test=>"kind_of? String and FORTRAN_BOOLS.include? self",
3318
+ :explanation=>
3319
+ "This variable must be a fortran boolean. (In Ruby this is represented as a string: e.g. '.true.')"}],
3320
+ :type=>:Fortran_Bool},
3321
+ :write_fields=>
3322
+ {:should_include=>"true",
3323
+ :description=>"",
3324
+ :help=>"",
3325
+ :code_name=>:write_fields,
3326
+ :must_pass=>
3327
+ [{:test=>"kind_of? String and FORTRAN_BOOLS.include? self",
3328
+ :explanation=>
3329
+ "This variable must be a fortran boolean. (In Ruby this is represented as a string: e.g. '.true.')"}],
3330
+ :type=>:Fortran_Bool},
3331
+ :write_phi_over_time=>
3332
+ {:should_include=>"true",
3333
+ :description=>"",
3334
+ :help=>"",
3335
+ :code_name=>:write_phi_over_time,
3336
+ :must_pass=>
3337
+ [{:test=>"kind_of? String and FORTRAN_BOOLS.include? self",
3338
+ :explanation=>
3339
+ "This variable must be a fortran boolean. (In Ruby this is represented as a string: e.g. '.true.')"}],
3340
+ :type=>:Fortran_Bool},
3341
+ :write_apar_over_time=>
3342
+ {:should_include=>"true",
3343
+ :description=>"",
3344
+ :help=>"",
3345
+ :code_name=>:write_apar_over_time,
3346
+ :must_pass=>
3347
+ [{:test=>"kind_of? String and FORTRAN_BOOLS.include? self",
3348
+ :explanation=>
3349
+ "This variable must be a fortran boolean. (In Ruby this is represented as a string: e.g. '.true.')"}],
3350
+ :type=>:Fortran_Bool},
3351
+ :write_bpar_over_time=>
3352
+ {:should_include=>"true",
3353
+ :description=>"",
3354
+ :help=>"",
3355
+ :code_name=>:write_bpar_over_time,
3356
+ :must_pass=>
3357
+ [{:test=>"kind_of? String and FORTRAN_BOOLS.include? self",
3358
+ :explanation=>
3359
+ "This variable must be a fortran boolean. (In Ruby this is represented as a string: e.g. '.true.')"}],
3360
+ :type=>:Fortran_Bool},
3361
+ :write_dist_fn=>
3362
+ {:should_include=>"true",
3363
+ :description=>"",
3364
+ :help=>"",
3365
+ :code_name=>:write_dist_fn,
3366
+ :must_pass=>
3367
+ [{:test=>"kind_of? String and FORTRAN_BOOLS.include? self",
3368
+ :explanation=>
3369
+ "This variable must be a fortran boolean. (In Ruby this is represented as a string: e.g. '.true.')"}],
3370
+ :type=>:Fortran_Bool},
3371
+ :write_dist_fn_over_time=>
3372
+ {:should_include=>"true",
3373
+ :description=>"",
3374
+ :help=>"",
3375
+ :code_name=>:write_dist_fn_over_time,
3376
+ :must_pass=>
3377
+ [{:test=>"kind_of? String and FORTRAN_BOOLS.include? self",
3378
+ :explanation=>
3379
+ "This variable must be a fortran boolean. (In Ruby this is represented as a string: e.g. '.true.')"}],
3380
+ :type=>:Fortran_Bool},
3381
+ :write_fluxes=>
3382
+ {:should_include=>"true",
3383
+ :description=>"",
3384
+ :help=>"",
3385
+ :code_name=>:write_fluxes,
3386
+ :must_pass=>
3387
+ [{:test=>"kind_of? String and FORTRAN_BOOLS.include? self",
3388
+ :explanation=>
3389
+ "This variable must be a fortran boolean. (In Ruby this is represented as a string: e.g. '.true.')"}],
3390
+ :type=>:Fortran_Bool},
3391
+ :write_fluxes_by_mode=>
3392
+ {:should_include=>"true",
3393
+ :description=>"",
3394
+ :help=>"",
3395
+ :code_name=>:write_fluxes_by_mode,
3396
+ :must_pass=>
3397
+ [{:test=>"kind_of? String and FORTRAN_BOOLS.include? self",
3398
+ :explanation=>
3399
+ "This variable must be a fortran boolean. (In Ruby this is represented as a string: e.g. '.true.')"}],
3400
+ :type=>:Fortran_Bool},
3401
+ :write_omega=>
3402
+ {:should_include=>"true",
3403
+ :description=>"",
3404
+ :help=>"",
3405
+ :code_name=>:write_omega,
3406
+ :must_pass=>
3407
+ [{:test=>"kind_of? String and FORTRAN_BOOLS.include? self",
3408
+ :explanation=>
3409
+ "This variable must be a fortran boolean. (In Ruby this is represented as a string: e.g. '.true.')"}],
3410
+ :type=>:Fortran_Bool},
3411
+ :write_omega_all=>
3412
+ {:should_include=>"true",
3413
+ :description=>"",
3414
+ :help=>"",
3415
+ :code_name=>:write_omega_all,
3416
+ :must_pass=>
3417
+ [{:test=>"kind_of? String and FORTRAN_BOOLS.include? self",
3418
+ :explanation=>
3419
+ "This variable must be a fortran boolean. (In Ruby this is represented as a string: e.g. '.true.')"}],
3420
+ :type=>:Fortran_Bool},
3421
+ :navg=>
3422
+ {:should_include=>"true",
3423
+ :description=>"",
3424
+ :help=>"",
3425
+ :code_name=>:navg,
3426
+ :must_pass=>
3427
+ [{:test=>"kind_of? Integer",
3428
+ :explanation=>"This variable must be an integer."}],
3429
+ :type=>:Integer},
3430
+ :igomega=>
3431
+ {:should_include=>"true",
3432
+ :description=>"",
3433
+ :help=>"",
3434
+ :code_name=>:igomega,
3435
+ :must_pass=>
3436
+ [{:test=>"kind_of? Integer",
3437
+ :explanation=>"This variable must be an integer."}],
3438
+ :type=>:Integer},
3439
+ :omegatinst=>
3440
+ {:should_include=>"true",
3441
+ :description=>"",
3442
+ :help=>"",
3443
+ :code_name=>:omegatinst,
3444
+ :must_pass=>
3445
+ [{:test=>"kind_of? Numeric",
3446
+ :explanation=>
3447
+ "This variable must be a floating point number (an integer is also acceptable: it will be converted into a floating point number)."}],
3448
+ :type=>:Float},
3449
+ :omegatol=>
3450
+ {:should_include=>"true",
3451
+ :description=>"",
3452
+ :help=>"",
3453
+ :code_name=>:omegatol,
3454
+ :must_pass=>
3455
+ [{:test=>"kind_of? Numeric",
3456
+ :explanation=>
3457
+ "This variable must be a floating point number (an integer is also acceptable: it will be converted into a floating point number)."}],
3458
+ :type=>:Float},
3459
+ :exit_when_converged=>
3460
+ {:should_include=>"true",
3461
+ :description=>"",
3462
+ :help=>"",
3463
+ :code_name=>:exit_when_converged,
3464
+ :must_pass=>
3465
+ [{:test=>"kind_of? String and FORTRAN_BOOLS.include? self",
3466
+ :explanation=>
3467
+ "This variable must be a fortran boolean. (In Ruby this is represented as a string: e.g. '.true.')"}],
3468
+ :type=>:Fortran_Bool}}},
3469
+ :solver=>
3470
+ {:description=>"",
3471
+ :should_include=>"true",
3472
+ :variables=>
3473
+ {:equation_set=>
3474
+ {:should_include=>"true",
3475
+ :description=>"0 for gyrokinetic, 1 for Vlasov-Poisson",
3476
+ :help=>
3477
+ "Sets the equation set to be solved:\n**0 for gyrokinetic equations\n**1 for (1+1)D Vlasov-Poisson",
3478
+ :code_name=>:equation_set,
2885
3479
  :must_pass=>
2886
3480
  [{:test=>"kind_of? Integer",
2887
3481
  :explanation=>"This variable must be an integer."}],
@@ -141,7 +141,7 @@ def self.defaults_file_header
141
141
  EOF1
142
142
  end
143
143
 
144
- @source_code_subfolders = ['utils']
144
+ @source_code_subfolders = ['utils', 'diagnostics', 'easy_namelists']
145
145
 
146
146
  folder = File.dirname(File.expand_path(__FILE__)) # i.e. the directory this file is in
147
147
 
@@ -0,0 +1,18 @@
1
+ require 'rubygems'
2
+ require 'bundler'
3
+ begin
4
+ Bundler.setup(:default, :development)
5
+ rescue Bundler::BundlerError => e
6
+ $stderr.puts e.message
7
+ $stderr.puts "Run `bundle install` to install missing gems"
8
+ exit e.status_code
9
+ end
10
+ require 'test/unit'
11
+ require 'shoulda'
12
+
13
+ $LOAD_PATH.unshift(File.join(File.dirname(__FILE__), '..', 'lib'))
14
+ $LOAD_PATH.unshift(File.dirname(__FILE__))
15
+ require 'coderunner'
16
+
17
+ class Test::Unit::TestCase
18
+ end
@@ -0,0 +1,5 @@
1
+ require 'helper'
2
+ CodeRunner.setup_run_class('gs2',modlet:'spectrogk')
3
+ #CodeRunner::Gs2::Spectrogk.update_defaults_from_source_code(ENV['SGK_SOURCE'])
4
+ CodeRunner::Gs2::Spectrogk.synchronise_variables(ENV['SGK_SOURCE'])
5
+
metadata CHANGED
@@ -1,7 +1,7 @@
1
1
  --- !ruby/object:Gem::Specification
2
2
  name: gs2crmod
3
3
  version: !ruby/object:Gem::Version
4
- version: 0.11.3
4
+ version: 0.11.4
5
5
  prerelease:
6
6
  platform: ruby
7
7
  authors:
@@ -10,7 +10,7 @@ authors:
10
10
  autorequire:
11
11
  bindir: bin
12
12
  cert_chain: []
13
- date: 2014-01-20 00:00:00.000000000 Z
13
+ date: 2014-01-28 00:00:00.000000000 Z
14
14
  dependencies:
15
15
  - !ruby/object:Gem::Dependency
16
16
  name: coderunner
@@ -187,6 +187,8 @@ files:
187
187
  - sync_mediawiki/sync_mediawiki.rb
188
188
  - sync_variables/helper.rb
189
189
  - sync_variables/sync_variables.rb
190
+ - sync_variables_sgk/helper.rb
191
+ - sync_variables_sgk/sync_variables_sgk.rb
190
192
  - test/agk_slab_itg_low_kperp.in
191
193
  - test/agk_slab_itg_low_kperp.tgz
192
194
  - test/cyclone_low_res.in