gryfxcrmod 0.1.8 → 0.1.9

checksums.yaml

@@ -0,0 +1,7 @@
+---
+SHA1:
+  metadata.gz: 654f77b374903ca857aed91ec28c704e878a2330
+  data.tar.gz: 75496ee3076a399b3f0c122d5d5a67dc3713f3d9
+SHA512:
+  metadata.gz: 265d1552d0752329732398eea1cded3763711952330bf0d3fd4534cd1e96b2d768df4211aac23093cefe30f8c856cbf812bcec0233a786a02f78c3f6817f2b95
+  data.tar.gz: 675d5dea155b0f5607ccf9ca915330deed7660052ec47fca3c8a9b9ed46acaa23b5456ede903dd3c49c706c260fb1bab6557451d6acfb4cd604e653df2a72f90

data/Gemfile

@@ -2,17 +2,14 @@ source "http://rubygems.org"
 # Add dependencies required to use your gem here.
 # Example:
 #   gem "activesupport", ">= 2.3.5"
-    gem "coderunner", ">= 0.13.0"
+    gem "coderunner", ">= 0.16.7"
     gem "gs2crmod", ">= 0.10.1"
-		gem "ruby-netcdf", ">= 0.6.6"
 
 # Add dependencies to develop your gem here.
 # Include everything needed to run rake, tests, features, etc.
 group :development do
   gem "shoulda", ">= 0"
-  gem "shoulda-context", ">= 1.1.5"
   gem "rdoc", "~> 3.12"
-  gem "bundler", ">= 1.0.0"
-  gem "jeweler", ">= 1.8.4"
-  #gem "rcov", ">= 0"
+  gem "bundler", "> 1.0.0"
+  gem "jeweler", ">= 2.0.0"
 end

data/VERSION

@@ -1 +1 @@
-0.1.8
+0.1.9

data/gryfxcrmod.gemspec

@@ -2,14 +2,16 @@
 # DO NOT EDIT THIS FILE DIRECTLY
 # Instead, edit Jeweler::Tasks in Rakefile, and run 'rake gemspec'
 # -*- encoding: utf-8 -*-
+# stub: gryfxcrmod 0.1.9 ruby lib
 
 Gem::Specification.new do |s|
   s.name = "gryfxcrmod"
-  s.version = "0.1.8"
+  s.version = "0.1.9"
 
   s.required_rubygems_version = Gem::Requirement.new(">= 0") if s.respond_to? :required_rubygems_version=
+  s.require_paths = ["lib"]
   s.authors = ["Edmund Highcock"]
-  s.date = "2013-09-12"
+  s.date = "2015-05-21"
   s.description = "This is a customised subclass of the CodeRunner::Run  class which allows CodeRunner to run and analyse the gyrofluid GPU turbulent transport solver Gryfx."
   s.email = "edmundhighcock@users.sourceforge.net"
   s.extra_rdoc_files = [
@@ -40,41 +42,34 @@ Gem::Specification.new do |s|
   ]
   s.homepage = "http://github.com/edmundhighcock/gryfxcrmod"
   s.licenses = ["MIT"]
-  s.require_paths = ["lib"]
-  s.rubygems_version = "1.8.23"
+  s.rubygems_version = "2.2.0"
   s.summary = "CodeRunner module for the Gryfx Gyrofluid Transport Solver"
 
   if s.respond_to? :specification_version then
-    s.specification_version = 3
+    s.specification_version = 4
 
     if Gem::Version.new(Gem::VERSION) >= Gem::Version.new('1.2.0') then
-      s.add_runtime_dependency(%q<coderunner>, [">= 0.13.0"])
+      s.add_runtime_dependency(%q<coderunner>, [">= 0.16.7"])
       s.add_runtime_dependency(%q<gs2crmod>, [">= 0.10.1"])
-      s.add_runtime_dependency(%q<ruby-netcdf>, [">= 0.6.6"])
       s.add_development_dependency(%q<shoulda>, [">= 0"])
-      s.add_development_dependency(%q<shoulda-context>, [">= 1.1.5"])
       s.add_development_dependency(%q<rdoc>, ["~> 3.12"])
-      s.add_development_dependency(%q<bundler>, [">= 1.0.0"])
-      s.add_development_dependency(%q<jeweler>, [">= 1.8.4"])
+      s.add_development_dependency(%q<bundler>, ["> 1.0.0"])
+      s.add_development_dependency(%q<jeweler>, [">= 2.0.0"])
     else
-      s.add_dependency(%q<coderunner>, [">= 0.13.0"])
+      s.add_dependency(%q<coderunner>, [">= 0.16.7"])
       s.add_dependency(%q<gs2crmod>, [">= 0.10.1"])
-      s.add_dependency(%q<ruby-netcdf>, [">= 0.6.6"])
       s.add_dependency(%q<shoulda>, [">= 0"])
-      s.add_dependency(%q<shoulda-context>, [">= 1.1.5"])
       s.add_dependency(%q<rdoc>, ["~> 3.12"])
-      s.add_dependency(%q<bundler>, [">= 1.0.0"])
-      s.add_dependency(%q<jeweler>, [">= 1.8.4"])
+      s.add_dependency(%q<bundler>, ["> 1.0.0"])
+      s.add_dependency(%q<jeweler>, [">= 2.0.0"])
     end
   else
-    s.add_dependency(%q<coderunner>, [">= 0.13.0"])
+    s.add_dependency(%q<coderunner>, [">= 0.16.7"])
     s.add_dependency(%q<gs2crmod>, [">= 0.10.1"])
-    s.add_dependency(%q<ruby-netcdf>, [">= 0.6.6"])
     s.add_dependency(%q<shoulda>, [">= 0"])
-    s.add_dependency(%q<shoulda-context>, [">= 1.1.5"])
     s.add_dependency(%q<rdoc>, ["~> 3.12"])
-    s.add_dependency(%q<bundler>, [">= 1.0.0"])
-    s.add_dependency(%q<jeweler>, [">= 1.8.4"])
+    s.add_dependency(%q<bundler>, ["> 1.0.0"])
+    s.add_dependency(%q<jeweler>, [">= 2.0.0"])
   end
 end
 

data/lib/gryfxcrmod/deleted_variables.rb

@@ -398,4 +398,26 @@
     [{:test=>"kind_of? String",
       :explanation=>"This variable must be a string."}],
    :type=>:String,
-   :autoscanned_defaults=>["on"]}}
+   :autoscanned_defaults=>["on"]},
+ :dt=>
+  {:should_include=>"true",
+   :description=>nil,
+   :help=>nil,
+   :code_name=>:dt,
+   :must_pass=>
+    [{:test=>"kind_of? Numeric",
+      :explanation=>
+       "This variable must be a floating point number (an integer is also acceptable: it will be converted into a floating point number)."}],
+   :type=>:Float,
+   :autoscanned_defaults=>[0.02]},
+ :maxdt=>
+  {:should_include=>"true",
+   :description=>nil,
+   :help=>nil,
+   :code_name=>:maxdt,
+   :must_pass=>
+    [{:test=>"kind_of? Numeric",
+      :explanation=>
+       "This variable must be a floating point number (an integer is also acceptable: it will be converted into a floating point number)."}],
+   :type=>:Float,
+   :autoscanned_defaults=>[0.02]}}

data/lib/gryfxcrmod/gryfx.rb

@@ -94,11 +94,12 @@ class CodeRunner
 			get_status
 			#p ['id is', id, 'ctd is ', ctd]
 			if ctd
-				calculate_results 
+				#calculate_results 
 			end
 			#p ['fusionQ is ', fusionQ]
 		end
 
+
 		def get_status
 			if @running
 				unless @status==:Queueing
@@ -122,7 +123,7 @@ class CodeRunner
 
 		def get_completed_timesteps
 			if FileTest.exist?(@run_name  + '.cdf')
-				@completed_timesteps = gsl_vector('t').size
+				@completed_timesteps = netcdf_file.var('t').get.size #gsl_vector('t').size
 			else
 				@completed_timesteps = 0
 			end
@@ -132,6 +133,8 @@ class CodeRunner
 			@directory + '/' +  @run_name + '.cdf'
 		end
 
+    def generate_component_runs
+    end
 		#def calculate_results
 		#end