gryfxcrmod 0.0.0 → 0.1.0
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- data/Gemfile +3 -0
- data/Rakefile +10 -0
- data/VERSION +1 -1
- data/gryfxcrmod.gemspec +19 -2
- data/lib/gryfxcrmod/deleted_variables.rb +253 -0
- data/lib/gryfxcrmod/gryfx.rb +32 -3
- data/lib/gryfxcrmod/namelist_tools.rb +58 -0
- data/lib/gryfxcrmod/namelists.rb +834 -1
- data/sync_mediawiki/helper.rb +18 -0
- data/sync_mediawiki/sync_mediawiki.rb +7 -0
- data/sync_variables/helper.rb +18 -0
- data/sync_variables/sync_variables.rb +27 -0
- data/test/cyclone_miller_ke.in +200 -0
- data/test/cyclone_miller_ke.tgz +0 -0
- data/test/test_gryfxcrmod.rb +54 -0
- metadata +59 -3
data/Gemfile
CHANGED
@@ -3,11 +3,14 @@ source "http://rubygems.org"
|
|
3
3
|
# Example:
|
4
4
|
# gem "activesupport", ">= 2.3.5"
|
5
5
|
gem "coderunner", ">= 0.13.0"
|
6
|
+
gem "gs2crmod", ">= 0.9.9"
|
7
|
+
gem "ruby-netcdf", ">= 0.6.6"
|
6
8
|
|
7
9
|
# Add dependencies to develop your gem here.
|
8
10
|
# Include everything needed to run rake, tests, features, etc.
|
9
11
|
group :development do
|
10
12
|
gem "shoulda", ">= 0"
|
13
|
+
gem "shoulda-context", ">= 1.1.5"
|
11
14
|
gem "rdoc", "~> 3.12"
|
12
15
|
gem "bundler", ">= 1.0.0"
|
13
16
|
gem "jeweler", ">= 1.8.4"
|
data/Rakefile
CHANGED
@@ -31,6 +31,16 @@ Rake::TestTask.new(:test) do |test|
|
|
31
31
|
test.pattern = 'test/**/test_*.rb'
|
32
32
|
test.verbose = true
|
33
33
|
end
|
34
|
+
Rake::TestTask.new(:sync_variables) do |test|
|
35
|
+
test.libs << 'lib' << 'sync_variables'
|
36
|
+
test.pattern = 'sync_variables/sync_variables.rb'
|
37
|
+
test.verbose = true
|
38
|
+
end
|
39
|
+
Rake::TestTask.new(:sync_mediawiki) do |test|
|
40
|
+
test.libs << 'lib' << 'sync_mediawiki'
|
41
|
+
test.pattern = 'sync_mediawiki/sync_mediawiki.rb'
|
42
|
+
test.verbose = true
|
43
|
+
end
|
34
44
|
|
35
45
|
#require 'rcov/rcovtask'
|
36
46
|
#Rcov::RcovTask.new do |test|
|
data/VERSION
CHANGED
@@ -1 +1 @@
|
|
1
|
-
0.
|
1
|
+
0.1.0
|
data/gryfxcrmod.gemspec
CHANGED
@@ -5,11 +5,11 @@
|
|
5
5
|
|
6
6
|
Gem::Specification.new do |s|
|
7
7
|
s.name = "gryfxcrmod"
|
8
|
-
s.version = "0.
|
8
|
+
s.version = "0.1.0"
|
9
9
|
|
10
10
|
s.required_rubygems_version = Gem::Requirement.new(">= 0") if s.respond_to? :required_rubygems_version=
|
11
11
|
s.authors = ["Edmund Highcock"]
|
12
|
-
s.date = "2013-08-
|
12
|
+
s.date = "2013-08-15"
|
13
13
|
s.description = "This is a customised subclass of the CodeRunner::Run class which allows CodeRunner to run and analyse the gyrofluid GPU turbulent transport solver Gryfx."
|
14
14
|
s.email = "edmundhighcock@users.sourceforge.net"
|
15
15
|
s.extra_rdoc_files = [
|
@@ -25,8 +25,16 @@ Gem::Specification.new do |s|
|
|
25
25
|
"VERSION",
|
26
26
|
"gryfxcrmod.gemspec",
|
27
27
|
"lib/gryfxcrmod.rb",
|
28
|
+
"lib/gryfxcrmod/deleted_variables.rb",
|
28
29
|
"lib/gryfxcrmod/gryfx.rb",
|
30
|
+
"lib/gryfxcrmod/namelist_tools.rb",
|
29
31
|
"lib/gryfxcrmod/namelists.rb",
|
32
|
+
"sync_mediawiki/helper.rb",
|
33
|
+
"sync_mediawiki/sync_mediawiki.rb",
|
34
|
+
"sync_variables/helper.rb",
|
35
|
+
"sync_variables/sync_variables.rb",
|
36
|
+
"test/cyclone_miller_ke.in",
|
37
|
+
"test/cyclone_miller_ke.tgz",
|
30
38
|
"test/helper.rb",
|
31
39
|
"test/test_gryfxcrmod.rb"
|
32
40
|
]
|
@@ -41,20 +49,29 @@ Gem::Specification.new do |s|
|
|
41
49
|
|
42
50
|
if Gem::Version.new(Gem::VERSION) >= Gem::Version.new('1.2.0') then
|
43
51
|
s.add_runtime_dependency(%q<coderunner>, [">= 0.13.0"])
|
52
|
+
s.add_runtime_dependency(%q<gs2crmod>, [">= 0.9.9"])
|
53
|
+
s.add_runtime_dependency(%q<ruby-netcdf>, [">= 0.6.6"])
|
44
54
|
s.add_development_dependency(%q<shoulda>, [">= 0"])
|
55
|
+
s.add_development_dependency(%q<shoulda-context>, [">= 1.1.5"])
|
45
56
|
s.add_development_dependency(%q<rdoc>, ["~> 3.12"])
|
46
57
|
s.add_development_dependency(%q<bundler>, [">= 1.0.0"])
|
47
58
|
s.add_development_dependency(%q<jeweler>, [">= 1.8.4"])
|
48
59
|
else
|
49
60
|
s.add_dependency(%q<coderunner>, [">= 0.13.0"])
|
61
|
+
s.add_dependency(%q<gs2crmod>, [">= 0.9.9"])
|
62
|
+
s.add_dependency(%q<ruby-netcdf>, [">= 0.6.6"])
|
50
63
|
s.add_dependency(%q<shoulda>, [">= 0"])
|
64
|
+
s.add_dependency(%q<shoulda-context>, [">= 1.1.5"])
|
51
65
|
s.add_dependency(%q<rdoc>, ["~> 3.12"])
|
52
66
|
s.add_dependency(%q<bundler>, [">= 1.0.0"])
|
53
67
|
s.add_dependency(%q<jeweler>, [">= 1.8.4"])
|
54
68
|
end
|
55
69
|
else
|
56
70
|
s.add_dependency(%q<coderunner>, [">= 0.13.0"])
|
71
|
+
s.add_dependency(%q<gs2crmod>, [">= 0.9.9"])
|
72
|
+
s.add_dependency(%q<ruby-netcdf>, [">= 0.6.6"])
|
57
73
|
s.add_dependency(%q<shoulda>, [">= 0"])
|
74
|
+
s.add_dependency(%q<shoulda-context>, [">= 1.1.5"])
|
58
75
|
s.add_dependency(%q<rdoc>, ["~> 3.12"])
|
59
76
|
s.add_dependency(%q<bundler>, [">= 1.0.0"])
|
60
77
|
s.add_dependency(%q<jeweler>, [">= 1.8.4"])
|
@@ -0,0 +1,253 @@
|
|
1
|
+
{:tite=>
|
2
|
+
{:should_include=>"true",
|
3
|
+
:description=>"Ratio of ion to electron temperatures.",
|
4
|
+
:help=>
|
5
|
+
"Ratio of ion to electron temperatures. This parameter is used only when there is no species called \"electron\" included.",
|
6
|
+
:code_name=>:TiTe,
|
7
|
+
:must_pass=>
|
8
|
+
[{:test=>"kind_of? Numeric",
|
9
|
+
:explanation=>
|
10
|
+
"This variable must be a floating point number (an integer is also acceptable: it will be converted into a floating point number)."}],
|
11
|
+
:type=>:Float,
|
12
|
+
:autoscanned_defaults=>[1.0]},
|
13
|
+
:beta=>
|
14
|
+
{:should_include=>"true",
|
15
|
+
:description=>"",
|
16
|
+
:help=>"",
|
17
|
+
:code_name=>:beta,
|
18
|
+
:must_pass=>
|
19
|
+
[{:test=>"kind_of? Numeric",
|
20
|
+
:explanation=>
|
21
|
+
"This variable must be a floating point number (an integer is also acceptable: it will be converted into a floating point number)."}],
|
22
|
+
:type=>:Float},
|
23
|
+
:zeff=>
|
24
|
+
{:should_include=>"true",
|
25
|
+
:description=>"",
|
26
|
+
:help=>"",
|
27
|
+
:code_name=>:zeff,
|
28
|
+
:must_pass=>
|
29
|
+
[{:test=>"kind_of? Numeric",
|
30
|
+
:explanation=>
|
31
|
+
"This variable must be a floating point number (an integer is also acceptable: it will be converted into a floating point number)."}],
|
32
|
+
:type=>:Float},
|
33
|
+
:dens0=>
|
34
|
+
{:should_include=>"true",
|
35
|
+
:description=>nil,
|
36
|
+
:help=>nil,
|
37
|
+
:tests=>["Tst::FLOAT"],
|
38
|
+
:gs2_name=>:dens0,
|
39
|
+
:must_pass=>
|
40
|
+
[{:test=>"kind_of? Float or kind_of? Integer",
|
41
|
+
:explanation=>
|
42
|
+
"This variable must be a floating point number (an integer is also acceptable: it will be converted into a floating point number)."}],
|
43
|
+
:type=>:Float,
|
44
|
+
:code_name=>:dens0,
|
45
|
+
:autoscanned_defaults=>[]},
|
46
|
+
:u0=>
|
47
|
+
{:should_include=>"true",
|
48
|
+
:description=>nil,
|
49
|
+
:help=>nil,
|
50
|
+
:tests=>["Tst::FLOAT"],
|
51
|
+
:gs2_name=>:u0,
|
52
|
+
:must_pass=>
|
53
|
+
[{:test=>"kind_of? Float or kind_of? Integer",
|
54
|
+
:explanation=>
|
55
|
+
"This variable must be a floating point number (an integer is also acceptable: it will be converted into a floating point number)."}],
|
56
|
+
:type=>:Float,
|
57
|
+
:code_name=>:u0,
|
58
|
+
:autoscanned_defaults=>[]},
|
59
|
+
:uprim2=>
|
60
|
+
{:should_include=>"true",
|
61
|
+
:description=>nil,
|
62
|
+
:help=>" \n",
|
63
|
+
:tests=>["Tst::FLOAT"],
|
64
|
+
:gs2_name=>:uprim2,
|
65
|
+
:must_pass=>
|
66
|
+
[{:test=>"kind_of? Float or kind_of? Integer",
|
67
|
+
:explanation=>
|
68
|
+
"This variable must be a floating point number (an integer is also acceptable: it will be converted into a floating point number)."}],
|
69
|
+
:type=>:Float,
|
70
|
+
:code_name=>:uprim2,
|
71
|
+
:autoscanned_defaults=>[]},
|
72
|
+
:nustar=>
|
73
|
+
{:should_include=>"true",
|
74
|
+
:description=>nil,
|
75
|
+
:help=>nil,
|
76
|
+
:tests=>["Tst::FLOAT"],
|
77
|
+
:gs2_name=>:nustar,
|
78
|
+
:must_pass=>
|
79
|
+
[{:test=>"kind_of? Float or kind_of? Integer",
|
80
|
+
:explanation=>
|
81
|
+
"This variable must be a floating point number (an integer is also acceptable: it will be converted into a floating point number)."}],
|
82
|
+
:type=>:Float,
|
83
|
+
:code_name=>:nustar,
|
84
|
+
:autoscanned_defaults=>[]},
|
85
|
+
:nu=>
|
86
|
+
{:should_include=>"true",
|
87
|
+
:description=>nil,
|
88
|
+
:help=>nil,
|
89
|
+
:tests=>["Tst::FLOAT"],
|
90
|
+
:gs2_name=>:nu,
|
91
|
+
:must_pass=>
|
92
|
+
[{:test=>"kind_of? Float or kind_of? Integer",
|
93
|
+
:explanation=>
|
94
|
+
"This variable must be a floating point number (an integer is also acceptable: it will be converted into a floating point number)."}],
|
95
|
+
:type=>:Float,
|
96
|
+
:code_name=>:nu,
|
97
|
+
:autoscanned_defaults=>[]},
|
98
|
+
:nu_h=>
|
99
|
+
{:should_include=>"true",
|
100
|
+
:description=>nil,
|
101
|
+
:help=>nil,
|
102
|
+
:tests=>["Tst::FLOAT"],
|
103
|
+
:gs2_name=>:nu_h,
|
104
|
+
:must_pass=>
|
105
|
+
[{:test=>"kind_of? Float or kind_of? Integer",
|
106
|
+
:explanation=>
|
107
|
+
"This variable must be a floating point number (an integer is also acceptable: it will be converted into a floating point number)."}],
|
108
|
+
:type=>:Float,
|
109
|
+
:code_name=>:nu_h,
|
110
|
+
:autoscanned_defaults=>[]},
|
111
|
+
:tperp0=>
|
112
|
+
{:should_include=>"true",
|
113
|
+
:description=>nil,
|
114
|
+
:help=>nil,
|
115
|
+
:tests=>["Tst::FLOAT"],
|
116
|
+
:gs2_name=>:tperp0,
|
117
|
+
:must_pass=>
|
118
|
+
[{:test=>"kind_of? Float or kind_of? Integer",
|
119
|
+
:explanation=>
|
120
|
+
"This variable must be a floating point number (an integer is also acceptable: it will be converted into a floating point number)."}],
|
121
|
+
:type=>:Float,
|
122
|
+
:code_name=>:tperp0,
|
123
|
+
:autoscanned_defaults=>[]},
|
124
|
+
:tpar0=>
|
125
|
+
{:should_include=>"true",
|
126
|
+
:description=>nil,
|
127
|
+
:help=>nil,
|
128
|
+
:tests=>["Tst::FLOAT"],
|
129
|
+
:gs2_name=>:tpar0,
|
130
|
+
:must_pass=>
|
131
|
+
[{:test=>"kind_of? Float or kind_of? Integer",
|
132
|
+
:explanation=>
|
133
|
+
"This variable must be a floating point number (an integer is also acceptable: it will be converted into a floating point number)."}],
|
134
|
+
:type=>:Float,
|
135
|
+
:code_name=>:tpar0,
|
136
|
+
:autoscanned_defaults=>[]},
|
137
|
+
:source=>
|
138
|
+
{:should_include=>"true",
|
139
|
+
:description=>
|
140
|
+
"Normalised alpha source. If set -ve automatically adjusted to give specified alpha density.",
|
141
|
+
:help=>
|
142
|
+
"Sets the normalised source for alphas. If set negative will be automatically adjusted to give the specified alpha density.",
|
143
|
+
:code_name=>:source,
|
144
|
+
:must_pass=>
|
145
|
+
[{:test=>"kind_of? Numeric",
|
146
|
+
:explanation=>
|
147
|
+
"This variable must be a floating point number (an integer is also acceptable: it will be converted into a floating point number)."}],
|
148
|
+
:type=>:Float,
|
149
|
+
:autoscanned_defaults=>[]},
|
150
|
+
:sprim=>
|
151
|
+
{:should_include=>"true",
|
152
|
+
:description=>"Gradient of normalised source.",
|
153
|
+
:help=>"Gradient of normalised source.",
|
154
|
+
:code_name=>:sprim,
|
155
|
+
:must_pass=>
|
156
|
+
[{:test=>"kind_of? Numeric",
|
157
|
+
:explanation=>
|
158
|
+
"This variable must be a floating point number (an integer is also acceptable: it will be converted into a floating point number)."}],
|
159
|
+
:type=>:Float,
|
160
|
+
:autoscanned_defaults=>[]},
|
161
|
+
:gamma_ai=>
|
162
|
+
{:should_include=>"true",
|
163
|
+
:description=>
|
164
|
+
"Alpha ion collion rate. Should be roughly the same as nu_ii.",
|
165
|
+
:help=>
|
166
|
+
"Alpha ion collion rate. Normalisation chosen so that this parameter should be roughly the same as nu_ii.",
|
167
|
+
:code_name=>:gamma_ai,
|
168
|
+
:must_pass=>
|
169
|
+
[{:test=>"kind_of? Numeric",
|
170
|
+
:explanation=>
|
171
|
+
"This variable must be a floating point number (an integer is also acceptable: it will be converted into a floating point number)."}],
|
172
|
+
:type=>:Float,
|
173
|
+
:autoscanned_defaults=>[]},
|
174
|
+
:gamma_ae=>
|
175
|
+
{:should_include=>"true",
|
176
|
+
:description=>
|
177
|
+
"Alpha electron collion rate. Should be roughly the same as nu_ee.",
|
178
|
+
:help=>
|
179
|
+
"Alpha electron collion rate. Normalisation chosen so that this parameter should be roughly the same as nu_ee.",
|
180
|
+
:code_name=>:gamma_ae,
|
181
|
+
:must_pass=>
|
182
|
+
[{:test=>"kind_of? Numeric",
|
183
|
+
:explanation=>
|
184
|
+
"This variable must be a floating point number (an integer is also acceptable: it will be converted into a floating point number)."}],
|
185
|
+
:type=>:Float,
|
186
|
+
:autoscanned_defaults=>[]},
|
187
|
+
:itor=>
|
188
|
+
{:should_include=>"true",
|
189
|
+
:description=>"",
|
190
|
+
:help=>"",
|
191
|
+
:code_name=>:itor,
|
192
|
+
:must_pass=>
|
193
|
+
[{:test=>"kind_of? Integer",
|
194
|
+
:explanation=>"This variable must be an integer."}],
|
195
|
+
:type=>:Integer},
|
196
|
+
:iflux=>
|
197
|
+
{:should_include=>"true",
|
198
|
+
:description=>"",
|
199
|
+
:help=>"",
|
200
|
+
:code_name=>:iflux,
|
201
|
+
:must_pass=>
|
202
|
+
[{:test=>"kind_of? Integer",
|
203
|
+
:explanation=>"This variable must be an integer."}],
|
204
|
+
:type=>:Integer},
|
205
|
+
:ppl_eq=>
|
206
|
+
{:should_include=>"true",
|
207
|
+
:description=>"",
|
208
|
+
:help=>"",
|
209
|
+
:code_name=>:ppl_eq,
|
210
|
+
:must_pass=>
|
211
|
+
[{:test=>"kind_of? String and FORTRAN_BOOLS.include? self",
|
212
|
+
:explanation=>
|
213
|
+
"This variable must be a fortran boolean. (In Ruby this is represented as a string: e.g. '.true.')"}],
|
214
|
+
:type=>:Fortran_Bool},
|
215
|
+
:gen_eq=>
|
216
|
+
{:should_include=>"true",
|
217
|
+
:description=>"",
|
218
|
+
:help=>"",
|
219
|
+
:code_name=>:gen_eq,
|
220
|
+
:must_pass=>
|
221
|
+
[{:test=>"kind_of? String and FORTRAN_BOOLS.include? self",
|
222
|
+
:explanation=>
|
223
|
+
"This variable must be a fortran boolean. (In Ruby this is represented as a string: e.g. '.true.')"}],
|
224
|
+
:type=>:Fortran_Bool},
|
225
|
+
:efit_eq=>
|
226
|
+
{:should_include=>"true",
|
227
|
+
:description=>"",
|
228
|
+
:help=>"",
|
229
|
+
:code_name=>:efit_eq,
|
230
|
+
:must_pass=>
|
231
|
+
[{:test=>"kind_of? String and FORTRAN_BOOLS.include? self",
|
232
|
+
:explanation=>
|
233
|
+
"This variable must be a fortran boolean. (In Ruby this is represented as a string: e.g. '.true.')"}],
|
234
|
+
:type=>:Fortran_Bool},
|
235
|
+
:delrho=>
|
236
|
+
{:should_include=>"true",
|
237
|
+
:description=>"",
|
238
|
+
:help=>"",
|
239
|
+
:code_name=>:delrho,
|
240
|
+
:must_pass=>
|
241
|
+
[{:test=>"kind_of? Numeric",
|
242
|
+
:explanation=>
|
243
|
+
"This variable must be a floating point number (an integer is also acceptable: it will be converted into a floating point number)."}],
|
244
|
+
:type=>:Float},
|
245
|
+
:isym=>
|
246
|
+
{:should_include=>"true",
|
247
|
+
:description=>"",
|
248
|
+
:help=>"",
|
249
|
+
:code_name=>:isym,
|
250
|
+
:must_pass=>
|
251
|
+
[{:test=>"kind_of? Integer",
|
252
|
+
:explanation=>"This variable must be an integer."}],
|
253
|
+
:type=>:Integer}}
|
data/lib/gryfxcrmod/gryfx.rb
CHANGED
@@ -2,7 +2,8 @@ class CodeRunner
|
|
2
2
|
# This is a customised subclass of the CodeRunner::Run class which allows CodeRunner to run and analyse the gyrofluid GPU turbulent transport solver Gryfx.
|
3
3
|
#
|
4
4
|
# It generates the Gryfx input file, and both analyses the results and allows easy plotting of them.
|
5
|
-
|
5
|
+
CodeRunner.setup_run_class('gs2')
|
6
|
+
class Gryfx < Gs2
|
6
7
|
#include CodeRunner::SYSTEM_MODULE
|
7
8
|
|
8
9
|
|
@@ -12,7 +13,7 @@ class CodeRunner
|
|
12
13
|
|
13
14
|
# Use the Run::FortranNamelist tools to process the variable database
|
14
15
|
setup_namelists(@code_module_folder)
|
15
|
-
|
16
|
+
require 'gryfxcrmod/namelist_tools'
|
16
17
|
#require 'trinitycrmod/graphs'
|
17
18
|
|
18
19
|
################################################
|
@@ -44,7 +45,7 @@ class CodeRunner
|
|
44
45
|
name += " real_id: #@real_id" if @real_id
|
45
46
|
beginning = sprintf("%2d:%d %-60s %1s:%2.1f(%s) %3s%1s", @id, @job_no, name, @status.to_s[0,1], @run_time.to_f / 60.0, @nprocs.to_s, percent_complete, "%")
|
46
47
|
if ctd
|
47
|
-
beginning += sprintf("Q:%f, Pfusion:%f MW, Ti0:%f keV, Te0:%f keV, n0:%f x10^20", fusionQ, pfus, ti0, te0, ne0)
|
48
|
+
#beginning += sprintf("Q:%f, Pfusion:%f MW, Ti0:%f keV, Te0:%f keV, n0:%f x10^20", fusionQ, pfus, ti0, te0, ne0)
|
48
49
|
end
|
49
50
|
beginning += " ---#{@comment}" if @comment
|
50
51
|
beginning
|
@@ -83,5 +84,33 @@ class CodeRunner
|
|
83
84
|
#p ['fusionQ is ', fusionQ]
|
84
85
|
end
|
85
86
|
|
87
|
+
def get_status
|
88
|
+
if @running
|
89
|
+
@status = :Incomplete
|
90
|
+
else
|
91
|
+
get_completed_timesteps
|
92
|
+
if percent_complete = 100.0*@completed_timesteps.to_f/(nstep/nwrite) > 5.0
|
93
|
+
@status = :Complete
|
94
|
+
else
|
95
|
+
@status = :Failed
|
96
|
+
end
|
97
|
+
end
|
98
|
+
end
|
99
|
+
|
100
|
+
def get_completed_timesteps
|
101
|
+
if FileTest.exist?(@run_name + '.cdf')
|
102
|
+
@completed_timesteps = gsl_vector('t').size
|
103
|
+
else
|
104
|
+
@completed_timesteps = 0
|
105
|
+
end
|
106
|
+
end
|
107
|
+
|
108
|
+
def netcdf_filename
|
109
|
+
@directory + '/' + @run_name + '.cdf'
|
110
|
+
end
|
111
|
+
|
112
|
+
def calculate_results
|
113
|
+
end
|
114
|
+
|
86
115
|
end
|
87
116
|
end
|
@@ -0,0 +1,58 @@
|
|
1
|
+
|
2
|
+
class CodeRunner::Gryfx
|
3
|
+
@fortran_namelist_source_file_match = /(\.c|\.cpp|\.cu|\.cc)$/
|
4
|
+
|
5
|
+
@fortran_namelist_variable_match_regex = /^[^\/]*?fnr_get_(?<type>\w+)\(\&?[\w\s]+\s*,\s*["'](?<namelist>\w+)[\d()]*?['"]\s*,\s*['"](?<variable>\w+)['"],[^)]+\)\)\s*[&*\w\[\]\d]+\s*=\s*(?<default>\S+)\s*;/
|
6
|
+
#
|
7
|
+
# Find all input namelists and variables by scanning the source code
|
8
|
+
#
|
9
|
+
def self.get_namelists_and_variables_from_source_code(source)
|
10
|
+
nms = {}
|
11
|
+
all_variables_in_source = {}
|
12
|
+
namelist_declarations = {}
|
13
|
+
#source.scan(/^\s*namelist\s*\/(?<namelist>\w+)\/(?<variables>(?:(?:&\s*[\n\r]+)|[^!\n\r])*)/) do
|
14
|
+
#source.scan(Regexp.new("#{/^\s*namelist\s*\/\s*(?<namelist>\w+)\s*\//}(?<variables>#{FORTRAN_SINGLE_LINE})")) do
|
15
|
+
source.scan(rcp.fortran_namelist_variable_match_regex) do
|
16
|
+
namelist = $~[:namelist].to_s.downcase.to_sym
|
17
|
+
#variables = $~[:variables].gsub(/!.*/, '')
|
18
|
+
#eputs namelist, variables
|
19
|
+
#namelist_declarations[namelist] = variables
|
20
|
+
#gets # if namelist == :collisions_knobs
|
21
|
+
|
22
|
+
#next if [:stuff, :ingen_knobs].include? namelist
|
23
|
+
nms[namelist] ||= []
|
24
|
+
all_variables_in_source[namelist] ||= []
|
25
|
+
# puts variables
|
26
|
+
#variables.scan(/\w+/) do
|
27
|
+
var = $~[:variable].to_sym
|
28
|
+
# (p variables, namelist; exit) if var == :following or var == :sou
|
29
|
+
all_variables_in_source[namelist].push var
|
30
|
+
next if known_code_variable?(namelist, var)
|
31
|
+
nms[namelist].push var
|
32
|
+
#end
|
33
|
+
nms[namelist].uniq!
|
34
|
+
all_variables_in_source[namelist].uniq!
|
35
|
+
end
|
36
|
+
return [nms, all_variables_in_source, namelist_declarations]
|
37
|
+
end
|
38
|
+
def self.get_sample_value(source, var)
|
39
|
+
sample_val = nil
|
40
|
+
source.scan(rcp.fortran_namelist_variable_match_regex) do
|
41
|
+
#p $~
|
42
|
+
|
43
|
+
next unless var == $~[:variable].to_sym
|
44
|
+
sample_val = eval($~[:default].sub(/(\d\.)$/, '\10').sub(/^(\.\d)/, '0\1').sub(/(\d\.)[eE]/, '\10e'))
|
45
|
+
end
|
46
|
+
raise "Couldn't get a sample value for #{var.inspect}" unless sample_val
|
47
|
+
return sample_val
|
48
|
+
end
|
49
|
+
def self.update_defaults_from_source_code(source_code_folder = ARGV[-1])
|
50
|
+
source = get_aggregated_source_code_text(source_code_folder)
|
51
|
+
rcp.namelists.each do |nml, nmlhash|
|
52
|
+
nmlhash[:variables].each do |var, varhash|
|
53
|
+
varhash[:autoscanned_defaults] = [get_sample_value(source, varhash[:code_name]||var)] rescue []
|
54
|
+
save_namelists
|
55
|
+
end
|
56
|
+
end
|
57
|
+
end
|
58
|
+
end
|