graphml2json 0.0.3 → 0.1.0

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@@ -1,7 +1,7 @@
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data/CHANGELOG.md

@@ -0,0 +1,17 @@
+# 0.1.0 / 2018-12-30
+
+* Add command line excutable helper
+* Add data nodes to attributes
+
+# 0.0.3 / 2018-12-28
+
+* Update Nokogiri dependency
+
+# 0.0.2 / 2013-11-14
+
+* make work with namespacing
+* add specs
+
+# 0.0.1 / 2013-08-05
+
+* initial release

data/LICENSE.txt

@@ -1,4 +1,4 @@
-Copyright (c) 2013 Gregory Ostermayr
+Copyright (c) 2018 Gregory Ostermayr
 
 MIT License
 

data/README.md

@@ -1,6 +1,6 @@
 # Graphml2json
 
-Takes graphml and converts it to json for use in D3
+This utility takes graphml and converts it to json suitable for use in D3
 
 ## Installation
 
@@ -18,20 +18,91 @@ Or install it yourself as:
 
 ## Usage
 
+### From ruby
 ```
-gregors$ irb --simple-prompt
->> file = File.open('simple.graphml', 'rb')
-=> #<File:simple.graphml>
->> graphml = file.read
-=> "<?xml version=\"1.0\" encoding=\"UTF-8\"?>\n<graphml xmlns=\"http://graphml.graphdrawing.org/xmlns\"  \n    xmlns:xsi=\"http://www.w3.org/2001/XMLSchema-instance\"\n    xsi:schemaLocation=\"http://graphml.graphdrawing.org/xmlns\n     http://graphml.graphdrawing.org/xmlns/1.0/graphml.xsd\">\n  <graph id=\"G\" edgedefault=\"undirected\">\n    <node id=\"n0\"/>\n    <node id=\"n1\"/>\n    <node id=\"n2\"/>\n    <node id=\"n3\"/>\n    <node id=\"n4\"/>\n    <node id=\"n5\"/>\n    <node id=\"n6\"/>\n    <node id=\"n7\"/>\n    <node id=\"n8\"/>\n    <node id=\"n9\"/>\n    <node id=\"n10\"/>\n    <edge source=\"n0\" target=\"n2\"/>\n    <edge source=\"n1\" target=\"n2\"/>\n    <edge source=\"n2\" target=\"n3\"/>\n    <edge source=\"n3\" target=\"n5\"/>\n    <edge source=\"n3\" target=\"n4\"/>\n    <edge source=\"n4\" target=\"n6\"/>\n    <edge source=\"n6\" target=\"n5\"/>\n    <edge source=\"n5\" target=\"n7\"/>\n    <edge source=\"n6\" target=\"n8\"/>\n    <edge source=\"n8\" target=\"n7\"/>\n    <edge source=\"n8\" target=\"n9\"/>\n    <edge source=\"n8\" target=\"n10\"/>\n  </graph>\n</graphml>\n"
+>> require 'open-uri'
 >> require 'graphml2json'
-=> true
->> json = Graphml2Json.generate(graphml)
-=> "{\"nodes\":[{\"name\":0},{\"name\":1},{\"name\":2},{\"name\":3},{\"name\":4},{\"name\":5},{\"name\":6},{\"name\":7},{\"name\":8},{\"name\":9},{\"name\":10}],\"edges\":[{\"source\":0,\"target\":2},{\"source\":1,\"target\":2},{\"source\":2,\"target\":3},{\"source\":3,\"target\":5},{\"source\":3,\"target\":4},{\"source\":4,\"target\":6},{\"source\":6,\"target\":5},{\"source\":5,\"target\":7},{\"source\":6,\"target\":8},{\"source\":8,\"target\":7},{\"source\":8,\"target\":9},{\"source\":8,\"target\":10}]}"
+
+>> data = open('http://graphml.graphdrawing.org/primer/attributes.graphml').read
+=> "<?xml version=\"1.0\" encoding=\"UTF-8\"?>\n<!-- This file was written by the JAVA GraphML Library.-->\n<graphml xmlns=\"http://graphml.graphdrawing.org/xmlns\"  xmlns:xsi=\"http://www.w3.org/2001/XMLSchema-instance\"\nxsi:schemaLocation=\"http://graphml.graphdrawing.org/xmlns http://graphml.graphdrawing.org/xmlns/1.0/graphml.xsd\">\n  <key id=\"d0\" for=\"node\" attr.name=\"color\" attr.type=\"string\">\n    <default>yellow</default>\n  </key>\n  <key id=\"d1\" for=\"edge\" attr.name=\"weight\" attr.type=\"double\"/>\n  <graph id=\"G\" edgedefault=\"undirected\">\n    <node id=\"n0\">\n      <data key=\"d0\">green</data>\n    </node>\n    <node id=\"n1\"/>\n    <node id=\"n2\">\n      <data key=\"d0\">blue</data>\n    </node>\n    <node id=\"n3\">\n      <data key=\"d0\">red</data>\n    </node>\n    <node id=\"n4\"/>\n    <node id=\"n5\">\n      <data key=\"d0\">turquoise</data>\n    </node>\n    <edge id=\"e0\" source=\"n0\" target=\"n2\">\n      <data key=\"d1\">1.0</data>\n    </edge>\n    <edge id=\"e1\" source=\"n0\" target=\"n1\">\n      <data key=\"d1\">1.0</data>\n    </edge>\n    <edge id=\"e2\" source=\"n1\" target=\"n3\">\n      <data key=\"d1\">2.0</data>\n    </edge>\n    <edge id=\"e3\" source=\"n3\" target=\"n2\"/>\n    <edge id=\"e4\" source=\"n2\" target=\"n4\"/>\n    <edge id=\"e5\" source=\"n3\" target=\"n5\"/>\n    <edge id=\"e6\" source=\"n5\" target=\"n4\">\n      <data key=\"d1\">1.1</data>\n    </edge>\n  </graph>\n</graphml>\n"
+
+>> Graphml2Json.generate(data)
+
+=> "{\"nodes\":[{\"name\":0,\"d0\":\"green\"},{\"name\":1},{\"name\":2,\"d0\":\"blue\"},{\"name\":3,\"d0\":\"red\"},{\"name\":4},{\"name\":5,\"d0\":\"turquoise\"}],\"edges\":[{\"source\":0,\"target\":2,\"d1\":\"1.0\"},{\"source\":0,\"target\":1,\"d1\":\"1.0\"},{\"source\":1,\"target\":3,\"d1\":\"2.0\"},{\"source\":3,\"target\":2},{\"source\":2,\"target\":4},{\"source\":3,\"target\":5},{\"source\":5,\"target\":4,\"d1\":\"1.1\"}]}"
+```
+
+### From a terminal 
+
+You can also invoke the `graphml2json` utility from the command line. It takes stdin as input.
+
 ```
+$ curl http://graphml.graphdrawing.org/primer/attributes.graphml | graphml2json | json_pp
+{
+   "nodes" : [
+      {
+         "d0" : "green",
+         "name" : 0
+      },
+      {
+         "name" : 1
+      },
+      {
+         "name" : 2,
+         "d0" : "blue"
+      },
+      {
+         "name" : 3,
+         "d0" : "red"
+      },
+      {
+         "name" : 4
+      },
+      {
+         "d0" : "turquoise",
+         "name" : 5
+      }
+   ],
+   "edges" : [
+      {
+         "d1" : "1.0",
+         "source" : 0,
+         "target" : 2
+      },
+      {
+         "target" : 1,
+         "d1" : "1.0",
+         "source" : 0
+      },
+      {
+         "source" : 1,
+         "d1" : "2.0",
+         "target" : 3
+      },
+      {
+         "target" : 2,
+         "source" : 3
+      },
+      {
+         "source" : 2,
+         "target" : 4
+      },
+      {
+         "source" : 3,
+         "target" : 5
+      },
+      {
+         "d1" : "1.1",
+         "source" : 5,
+         "target" : 4
+      }
+   ]
+}
+
+```
+
+## Changelog
 
-sample file used taken from:
-http://graphml.graphdrawing.org/primer/graphml-primer.html
+* [changelog](https://github.com/gregors/graphml2json/blob/master/CHANGELOG.md)
 
 ## Contributing
 

data/bin/graphml2json

@@ -0,0 +1,5 @@
+#!/usr/bin/env ruby
+
+require_relative '../lib/graphml2json.rb'
+
+puts Graphml2Json.generate(ARGF.read)

data/graphml2json.gemspec

@@ -4,22 +4,22 @@ $LOAD_PATH.unshift(lib) unless $LOAD_PATH.include?(lib)
 require 'graphml2json/version'
 
 Gem::Specification.new do |spec|
-  spec.name          = "graphml2json"
+  spec.name          = 'graphml2json'
   spec.version       = Graphml2Json::VERSION
-  spec.authors       = ["Gregory Ostermayr"]
-  spec.email         = ["<gregory.ostermayr@gmail.com>"]
-  spec.description   = %q{Convert graphml to json}
-  spec.summary       = %q{Convert graphml to json}
-  spec.homepage      = "https://github.com/gregors/graphml2json"
-  spec.license       = "MIT"
+  spec.authors       = ['Gregory Ostermayr']
+  spec.email         = ['<gregory.ostermayr@gmail.com>']
+  spec.description   = %q{Convert graphml to json for D3 use}
+  spec.summary       = %q{Convert graphml to json for D3 use}
+  spec.homepage      = 'https://github.com/gregors/graphml2json'
+  spec.license       = 'MIT'
 
   spec.files         = `git ls-files`.split($/)
   spec.executables   = spec.files.grep(%r{^bin/}) { |f| File.basename(f) }
   spec.test_files    = spec.files.grep(%r{^(test|spec|features)/})
-  spec.require_paths = ["lib"]
+  spec.require_paths = ['lib']
 
   spec.add_dependency 'nokogiri', '>= 1.8.2'
-  spec.add_development_dependency "bundler", "~> 1.3"
-  spec.add_development_dependency "rspec", "~> 2.14.1"
+  spec.add_development_dependency 'bundler', '~> 1.6'
+  spec.add_development_dependency "rspec", '~> 2.14.1'
   spec.add_development_dependency "rake"
 end

data/lib/graphml2json.rb

@@ -3,7 +3,7 @@ require 'json'
 
 module Graphml2Json
 
-  def self.generate(xml_string) 
+  def self.generate(xml_string)
     doc = Nokogiri::XML(xml_string)
     doc.remove_namespaces!
     graph = doc.xpath('//graph')
@@ -14,21 +14,38 @@ module Graphml2Json
     @json_nodes = []
 
     @graph = {}
-    @graph[:nodes] = [] 
-    @graph[:edges] = [] 
+    @graph[:nodes] = []
+    @graph[:edges] = []
 
     nodes.each_with_index do |n, index|
-      @mapping[n[:id]] = index 
-      @graph[:nodes] << {:name => index}
+
+      attributes = data_attributes(n)
+      @mapping[n[:id]] = index
+      new_node = {:name => index}.merge(attributes)
+      @graph[:nodes] << new_node
     end
 
-    @json_edges = [] 
+    @json_edges = []
     edges.each do |e|
       source = @mapping[e[:source]]
       target = @mapping[e[:target]]
-      @graph[:edges] << { :source => source, :target => target }
+      attributes = data_attributes(e)
+      new_edge = { :source => source, :target => target }.merge(attributes)
+      @graph[:edges] << new_edge
     end
 
     JSON.generate(@graph)
   end
+
+  private
+
+  def self.data_attributes(node)
+    data_nodes = node.xpath('./data')
+
+    attributes = data_nodes.map do |d|
+      {d[:key] => d.text}
+    end.inject(&:merge)
+
+    attributes || {}
+  end
 end

data/lib/graphml2json/version.rb

@@ -1,3 +1,3 @@
 module Graphml2Json
-  VERSION = '0.0.3'
+  VERSION = '0.1.0'
 end

data/spec/fixtures/attributes.graphml

@@ -0,0 +1,39 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<graphml xmlns="http://graphml.graphdrawing.org/xmlns"  xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
+xsi:schemaLocation="http://graphml.graphdrawing.org/xmlns http://graphml.graphdrawing.org/xmlns/1.0/graphml.xsd">
+  <key id="d0" for="node" attr.name="color" attr.type="string">
+    <default>yellow</default>
+  </key>
+  <key id="d1" for="edge" attr.name="weight" attr.type="double"/>
+  <graph id="G" edgedefault="undirected">
+    <node id="n0">
+      <data key="color">green</data>
+    </node>
+    <node id="n1"/>
+    <node id="n2">
+      <data key="color">blue</data>
+    </node>
+    <node id="n3">
+      <data key="color">red</data>
+    </node>
+    <node id="n4"/>
+    <node id="n5">
+      <data key="color">turquoise</data>
+    </node>
+    <edge id="e0" source="n0" target="n2">
+      <data key="size">1.0</data>
+    </edge>
+    <edge id="e1" source="n0" target="n1">
+      <data key="size">1.0</data>
+    </edge>
+    <edge id="e2" source="n1" target="n3">
+      <data key="size">2.0</data>
+    </edge>
+    <edge id="e3" source="n3" target="n2"/>
+    <edge id="e4" source="n2" target="n4"/>
+    <edge id="e5" source="n3" target="n5"/>
+    <edge id="e6" source="n5" target="n4">
+      <data key="size">1.1</data>
+    </edge>
+  </graph>
+</graphml>

data/spec/graphml2json_spec.rb

@@ -1,23 +1,30 @@
 require 'spec_helper'
-require 'graphml2json'
 
 describe Graphml2Json do
   let(:json) {'{"nodes":[{"name":0},{"name":1},{"name":2},{"name":3}],"edges":[{"source":0,"target":1},{"source":1,"target":2},{"source":2,"target":3},{"source":3,"target":null}]}'}
 
-  describe ".generate" do
-    context "missing proper namespace" do
+  describe '.generate' do
+    context 'missing proper namespace' do
       it 'returns valid json' do
-        graphml = File.read("spec/fixtures/graphml_without_namespacing.txt")
+        graphml = File.read('spec/fixtures/graphml_without_namespacing.txt')
         Graphml2Json::generate(graphml).should == json
       end
     end
 
-    context "with namespace" do
+    context 'with namespace' do
       it 'returns valid json' do
-        graphml = File.read("spec/fixtures/graphml_with_namespacing.txt")
+        graphml = File.read('spec/fixtures/graphml_with_namespacing.txt')
+        Graphml2Json::generate(graphml).should == json
+      end
+    end
+
+    context 'with nodes' do
+      let(:json){'{"nodes":[{"name":0,"color":"green"},{"name":1},{"name":2,"color":"blue"},{"name":3,"color":"red"},{"name":4},{"name":5,"color":"turquoise"}],"edges":[{"source":0,"target":2,"size":"1.0"},{"source":0,"target":1,"size":"1.0"},{"source":1,"target":3,"size":"2.0"},{"source":3,"target":2},{"source":2,"target":4},{"source":3,"target":5},{"source":5,"target":4,"size":"1.1"}]}'}
+
+      it 'returns data as attributes' do
+        graphml = File.read('spec/fixtures/attributes.graphml')
         Graphml2Json::generate(graphml).should == json
       end
     end
   end
 end
-

data/spec/spec_helper.rb

@@ -4,6 +4,7 @@
 # loaded once.
 #
 # See http://rubydoc.info/gems/rspec-core/RSpec/Core/Configuration
+require 'graphml2json'
 
 RSpec.configure do |config|
   config.treat_symbols_as_metadata_keys_with_true_values = true

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: graphml2json
 version: !ruby/object:Gem::Version
-  version: 0.0.3
+  version: 0.1.0
 platform: ruby
 authors:
 - Gregory Ostermayr
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2018-12-28 00:00:00.000000000 Z
+date: 2018-12-31 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: nokogiri
@@ -30,14 +30,14 @@ dependencies:
     requirements:
     - - "~>"
       - !ruby/object:Gem::Version
-        version: '1.3'
+        version: '1.6'
   type: :development
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
     requirements:
     - - "~>"
       - !ruby/object:Gem::Version
-        version: '1.3'
+        version: '1.6'
 - !ruby/object:Gem::Dependency
   name: rspec
   requirement: !ruby/object:Gem::Requirement
@@ -66,22 +66,26 @@ dependencies:
     - - ">="
       - !ruby/object:Gem::Version
         version: '0'
-description: Convert graphml to json
+description: Convert graphml to json for D3 use
 email:
 - "<gregory.ostermayr@gmail.com>"
-executables: []
+executables:
+- graphml2json
 extensions: []
 extra_rdoc_files: []
 files:
 - ".gitignore"
 - ".rspec"
+- CHANGELOG.md
 - Gemfile
 - LICENSE.txt
 - README.md
 - Rakefile
+- bin/graphml2json
 - graphml2json.gemspec
 - lib/graphml2json.rb
 - lib/graphml2json/version.rb
+- spec/fixtures/attributes.graphml
 - spec/fixtures/graphml_with_namespacing.txt
 - spec/fixtures/graphml_without_namespacing.txt
 - spec/graphml2json_spec.rb
@@ -106,11 +110,12 @@ required_rubygems_version: !ruby/object:Gem::Requirement
       version: '0'
 requirements: []
 rubyforge_project: 
-rubygems_version: 2.7.8
+rubygems_version: 2.7.7
 signing_key: 
 specification_version: 4
-summary: Convert graphml to json
+summary: Convert graphml to json for D3 use
 test_files:
+- spec/fixtures/attributes.graphml
 - spec/fixtures/graphml_with_namespacing.txt
 - spec/fixtures/graphml_without_namespacing.txt
 - spec/graphml2json_spec.rb