gn_crossmap 0.1.2 → 0.1.3

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Files changed (6) hide show
  1. checksums.yaml +4 -4
  2. data/CHANGELOG.md +4 -0
  3. data/README.md +32 -7
  4. data/gn_crossmap.gemspec +2 -0
  5. data/lib/gn_crossmap/version.rb +1 -1
  6. metadata +4 -3
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data/CHANGELOG.md CHANGED
@@ -1,6 +1,10 @@
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  gn_crossmap CHANGELOG
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  =====================
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+ 0.1.3
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+ -----
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+ - [Dmitry Mozzherin][dimus] - README and gemspec changes
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+
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  0.1.2
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  -----
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  - [Dmitry Mozzherin][dimus] - clean up docs, and remove junk code
data/README.md CHANGED
@@ -38,12 +38,12 @@ Usage
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  ### Input file format
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  - Comma Separated File with names of fields in first row.
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- - Columns can be separated by tab, comma or semicolon
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+ - Columns can be separated by **tab**, **comma** or **semicolon**
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  - At least some columns should have recognizable fields
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- taxonID kingdom phylum class order family genus species
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- subspecies variety form scientificNameAuthorship scientificName
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- taxonRank
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+ `taxonID` `kingdom` `phylum` `class` `order` `family` `genus` `species`
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+ `subspecies` `variety` `form scientificNameAuthorship` `scientificName`
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+ `taxonRank`
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  #### Simple Example
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@@ -51,23 +51,47 @@ Usage
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  1;Macrobiotus echinogenitus subsp. areolatus Murray, 1907
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  ...
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+ |taxonID | scientificName |
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+ |--------|---------------------------------------------------------|
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+ |1 | Animalia |
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+ |2 | Macrobiotus echinogenitus subsp. areolatus Murray, 1907 |
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+
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  #### Rank Example
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  taxonID;scientificName;taxonRank
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  1;Macrobiotus echinogenitus f. areolatus Murray, 1907;form
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  ...
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+ |taxonID | scientificName | taxonRank |
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+ |--------|---------------------------------------------------------|-----------|
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+ |1 | Animalia | kingdom |
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+ |2 | Macrobiotus echinogenitus subsp. areolatus Murray, 1907 | subspecies|
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+
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  #### Family and Authorship Example
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  taxonID;family;scientificName;scientificNameAuthorship
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  1;Macrobiotidae;Macrobiotus echinogenitus subsp. areolatus;Murray, 1907
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  ...
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+ |taxonID | family | scientificName | scientificNameAuthorship|
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+ |--------|---------------|---------------------------|-------------------------|
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+ |1 | | Animalia | |
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+ |2 | Macrobiotidae | Macrobiotus echinogenitus | Murray |
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+
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  #### Fine-grained Example
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  TaxonId;kingdom;subkingdom;phylum;subphylum;superclass;class;subclass;cohort;superorder;order;suborder;infraorder;superfamily;family;subfamily;tribe;subtribe;genus;subgenus;section;species;subspecies;variety;form;ScientificNameAuthorship
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  1;Animalia;;Tardigrada;;;Eutardigrada;;;;Parachela;;;Macrobiotoidea;Macrobiotidae;;;;Macrobiotus;;;harmsworthi;obscurus;;;Dastych, 1985
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+
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+ TaxonId|kingdom|subkingdom|phylum|subphylum|superclass|class|subclass|cohort|superorder|order|suborder|infraorder|superfamily|family|subfamily|tribe|subtribe|genus|subgenus|section|species|subspecies|variety|form|ScientificNameAuthorship
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+ -------|-------|----------|------|---------|----------|-----|--------|------|----------|-----|--------|----------|-----------|------|---------|-----|--------|-----|--------|-------|-------|----------|-------|----|------------------------
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+ 136021|Animalia||Pogonophora||||||||||||||||||||||
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+ 136022|Animalia||Pogonophora|||Frenulata|||||||||||||||||||Webb, 1969
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+ 565443|Animalia||Tardigrada|||Eutardigrada||||Parachela|||Macrobiotoidea|Macrobiotidae||||Macrobiotus|||harmsworthi|obscurus|||Dastych, 1985
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+
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+ More examples can be found in [spec/files][files] directory
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+
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  ### Usage from command line
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  # to see help
@@ -119,9 +143,9 @@ Author -- [Dmitry Mozzherin][dimus]
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  Copyright (c) 2015 [Marine Biological Laboratory][mbl].
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  See [LICENSE][license] for details.
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- [gem_badge]: https://badge.fury.io/rb/gn_crossmap.png
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+ [gem_badge]: https://badge.fury.io/rb/gn_crossmap.svg
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  [gem_link]: http://badge.fury.io/rb/gn_crossmap
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- [ci_badge]: https://secure.travis-ci.org/GlobalNamesArchitecture/gn_crossmap.png
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+ [ci_badge]: https://secure.travis-ci.org/GlobalNamesArchitecture/gn_crossmap.svg
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  [ci_link]: http://travis-ci.org/GlobalNamesArchitecture/gn_crossmap
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  [cov_badge]: https://coveralls.io/repos/GlobalNamesArchitecture/gn_crossmap/badge.svg?branch=master
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  [cov_link]: https://coveralls.io/r/GlobalNamesArchitecture/gn_crossmap?branch=master
@@ -129,9 +153,10 @@ See [LICENSE][license] for details.
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  [code_link]: https://codeclimate.com/github/GlobalNamesArchitecture/gn_crossmap
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  [dep_badge]: https://gemnasium.com/GlobalNamesArchitecture/gn_crossmap.png
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  [dep_link]: https://gemnasium.com/GlobalNamesArchitecture/gn_crossmap
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- [resolver]: http://resolver.globalnames.org
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+ [resolver]: http://resolver.globalnames.org/data_sources
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  [rubygems]: https://rubygems.org
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  [dimus]: https://github.com/dimus
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  [mbl]: http://mbl.edu
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  [license]: https://github.com/GlobalNamesArchitecture/gn_crossmap/blob/master/LICENSE
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  [terms]: http://rs.tdwg.org/dwc/terms
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+ [files]: https://github.com/GlobalNamesArchitecture/gn_crossmap/tree/master/spec/files
data/gn_crossmap.gemspec CHANGED
@@ -4,8 +4,10 @@ $LOAD_PATH.unshift(lib) unless $LOAD_PATH.include?(lib)
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  require "gn_crossmap/version"
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  Gem::Specification.new do |gem|
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+ gem.required_ruby_version = ">= 2.1"
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  gem.name = "gn_crossmap"
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  gem.version = GnCrossmap::VERSION
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+ gem.license = "MIT"
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  gem.authors = ["Dmitry Mozzherin"]
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  gem.email = ["dmozzherin@gmail.com"]
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data/lib/gn_crossmap/version.rb CHANGED
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  # Namespace module for crossmapping checklists to GN sources
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  module GnCrossmap
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- VERSION = "0.1.2"
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+ VERSION = "0.1.3"
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  def self.version
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  VERSION
metadata CHANGED
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  --- !ruby/object:Gem::Specification
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  name: gn_crossmap
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  version: !ruby/object:Gem::Version
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- version: 0.1.2
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+ version: 0.1.3
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  platform: ruby
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  authors:
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  - Dmitry Mozzherin
@@ -155,7 +155,8 @@ files:
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  - lib/gn_crossmap/version.rb
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  - lib/gn_crossmap/writer.rb
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  homepage: https://github.com/GlobalNamesArchitecture/gn_crossmap
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- licenses: []
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+ licenses:
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+ - MIT
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  metadata: {}
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  post_install_message:
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  rdoc_options: []
@@ -165,7 +166,7 @@ required_ruby_version: !ruby/object:Gem::Requirement
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  requirements:
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  - - ">="
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  - !ruby/object:Gem::Version
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- version: '0'
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+ version: '2.1'
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  required_rubygems_version: !ruby/object:Gem::Requirement
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  requirements:
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  - - ">="