genome-rb 0.1.0 → 0.1.1

checksums.yaml

@@ -1,7 +1,7 @@
 ---
 SHA256:
-  metadata.gz: 720d3f90b716800b67257c44ccacec7d8e2f06d79c19047a2d0a0df51c68c97c
-  data.tar.gz: 03bb58c453382af625ed4e85bbd11efcfbec4e7c4f36ff5c1e47e64cb41408cb
+  metadata.gz: f5963b94eac35dc1945565026cacafd56ddc49f30a7c84d3651003927f9eaddb
+  data.tar.gz: 02d7cacbe02be0eabea105c8cd7d844d42a7f6e17975ecdbf992652b9614047d
 SHA512:
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-  data.tar.gz: 6841cfc17e64cf6ecf671b68d07a5c892cf962dba3a77f59f3f04ef2138838a1503a887e94eded214e0aae6465f1d5560e1ba9297e5f1ed1ac4f20d52af7a273
+  metadata.gz: e6e9b2fdee73663e1d36640ee18710fa5fc69edd9d0b39026f4235ff5bd74a02a41d9fc652f829248838546e2cb31c0fdff304fa2ade552761568c9c58bb19ff
+  data.tar.gz: ae82cc8aa908e531d9c7ad7ad4e4581b7c79d8a0e4267a1ba0fe94ef06877e3c4a41a66ac8896bd0ce6bfa5b48f135d8052cc450c07ec8d7e4611d56c811819c

data/.travis.yml

@@ -14,3 +14,5 @@ deploy:
   gem: genome-rb
   on:
     repo: marigenhq/genome-rb
+    ruby: 2.5.5
+    branch: master

data/lib/genome/version.rb

@@ -1,3 +1,3 @@
 module GENOME
-  VERSION = '0.1.0'.freeze
+  VERSION = '0.1.1'.freeze
 end

data/lib/genome.rb

@@ -1,7 +1,20 @@
+# frozen_string_literal: true
+
 require 'genome/version'
 
+class ProviderError < StandardError
+  def initialize(message = 'ProviderError')
+    super(message)
+  end
+end
+
+class FileTypeError < StandardError
+  def initialize(message = 'FileTypeError')
+    super(message)
+  end
+end
+
 module GENOME
-  class Error < StandardError; end
   # Your code goes here...
   autoload :Genome, 'genome/genome'
   autoload :SNP, 'genome/snp'
@@ -25,15 +38,25 @@ module GENOME
   end
 
   def self.load(_filename, _provider = '23andme')
+    raise ProviderError, "#{_provider} is not supported." unless %w[23andme ancestry].include? _provider
+
+    first_line = File.open(_filename, &:readline)
+    if _provider == '23andme'
+      raise FileTypeError, "#{_filename} is not in a correct #{_provider} format" unless first_line.downcase.include? '23'.downcase
+    elsif _provider == 'ancestry'
+      raise FileTypeError, "#{_filename} is not in a correct #{_provider} format" unless first_line.downcase.include? 'ancestry'.downcase
+    end
+
     genome = Genome.new(name = _filename)
+    reader = if _provider == '23andme'
+               :ttandme_reader
+             elsif _provider == 'ancestry'
+               :ancestry_reader
+             end
     File.open(_filename).each do |line|
       next if line.start_with?('#') || line.start_with?('rsid')
 
-      if _provider.casecmp? '23andme'
-        rsid, snp = ttandme_reader line
-      else
-        rsid, snp = ancestry_reader line
-      end
+      rsid, snp = send reader, line
       genome[rsid] = snp
     end
     genome

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: genome-rb
 version: !ruby/object:Gem::Version
-  version: 0.1.0
+  version: 0.1.1
 platform: ruby
 authors:
 - Gary Lai
 autorequire: 
 bindir: exe
 cert_chain: []
-date: 2019-05-27 00:00:00.000000000 Z
+date: 2019-06-17 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: bundler
@@ -96,7 +96,7 @@ required_rubygems_version: !ruby/object:Gem::Requirement
     - !ruby/object:Gem::Version
       version: '0'
 requirements: []
-rubygems_version: 3.0.3
+rubygems_version: 3.0.4
 signing_key: 
 specification_version: 4
 summary: ruby library to read genome data