genevalidatorapp 2.1.5 → 2.1.6
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- checksums.yaml +4 -4
- data/.travis.yml +0 -2
- data/lib/genevalidatorapp.rb +3 -3
- data/lib/genevalidatorapp/config.rb +1 -1
- data/lib/genevalidatorapp/version.rb +1 -1
- data/views/index.slim +1 -1
- data/views/layout.slim +3 -3
- data/views/results.slim +4 -4
- metadata +1 -1
checksums.yaml
CHANGED
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@@ -1,7 +1,7 @@
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1
1
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---
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2
2
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SHA256:
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3
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-
metadata.gz:
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4
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-
data.tar.gz:
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3
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+
metadata.gz: 8418c3c9dee132e90d299fe20bd89d9277c3d150239e85125943e8006304ac87
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4
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+
data.tar.gz: 75253df93dc21e167e51df4753f8e386feb55ff3b5291abde22508446f0e47ed
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5
5
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SHA512:
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6
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-
metadata.gz:
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7
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-
data.tar.gz:
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6
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+
metadata.gz: f9e0416c420e21395f8fc9011a41285861d5d35d315145396e5f917b397c4b66033bf81871f4a1942985848aae43845ae4694482fa4e5e137be4bb22b74e67d3
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7
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+
data.tar.gz: 55531e71551cf3417219588f5c2ab2b8a398a212a597065c175952fd31081ee9ea75cbb563d1685f26d776c7dea02f6d9d2685aac204a543762fd134db4d22b8
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data/.travis.yml
CHANGED
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@@ -16,6 +16,4 @@ before_install:
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16
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- curl -L --fail https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.7.1/ncbi-blast-2.7.1+-x64-linux.tar.gz | tar -xzf - --strip-components=1 -C dependencies/blast
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- BLAST_BIN="$PWD/dependencies/blast/bin"
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- export PATH=${MAFFT_DIR}/bin:${BLAST_BIN}:$PATH
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-
# add GV as a dependency
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-
- echo "gem 'genevalidator'" >> Gemfile
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script: bundle exec rake test
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data/lib/genevalidatorapp.rb
CHANGED
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@@ -95,9 +95,9 @@ module GeneValidatorApp
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private
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def init_dirs
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config[:
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-
unique_start_id
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100
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-
@public_dir = File.join(config[:
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98
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+
config[:serve_public_dir] = File.expand_path(config[:serve_public_dir])
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99
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unique_start_id = 'GV_' + Time.now.strftime('%Y%m%d-%H-%M-%S').to_s
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+
@public_dir = File.join(config[:serve_public_dir], unique_start_id)
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init_public_dir
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end
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data/views/index.slim
CHANGED
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@@ -2,7 +2,7 @@ section#search
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2
2
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h1.page-header
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3
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span GeneValidator
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span.small Identify problems with gene predictions
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-
form#input action="
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+
form#input action="/" method="POST"
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.form-group#input_seq_group
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label.control-label.input_seq-label for="seq" Input Sequences:
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8
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- if @max_characters != 'undefined'
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data/views/layout.slim
CHANGED
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@@ -8,9 +8,9 @@ html lang="en"
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meta content="Wurmlab" name="author"
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title GeneValidator | Identify problems with Gene Predictions
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link href="
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+
link href="/web_files/css/gv.compiled.min.css" rel="stylesheet" type="text/css"
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-
script type="text/javascript" src="
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+
script type="text/javascript" src="/web_files/js/gv.compiled.min.js'"
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/! HTML5 shim and Respond.js IE8 support of HTML5 elements and media queries
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/![if lt IE 9]
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script src="https://oss.maxcdn.com/libs/html5shiv/3.7.0/html5shiv.js"
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@@ -29,7 +29,7 @@ html lang="en"
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.navbar-collapse.collapse.navbar-responsive-collapse
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ul.nav.navbar-nav
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li
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-
a href="https://
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+
a href="https://wserve_public_dirmlab.github.io/tools/genevalidator/" target="_blank" GeneValidator
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li
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a href="https://wurmlab.github.io/tools/genevalidator/api" target="_blank" API
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li
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data/views/results.slim
CHANGED
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@@ -15,9 +15,9 @@ h3 Overview
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- csv_file = File.join(output_dir, 'input_file_results.csv')
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- json_file = File.join(output_dir, 'input_file_results.json')
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- summary_file = File.join(output_dir, 'input_file_summary.csv')
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-
a.btn.btn-primary.btn-sm target="_blank" download="" style="margin-right:10px;" href="#{
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a.btn.btn-primary.btn-sm target="_blank" download="" style="margin-right:10px;" href="#{
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a.btn.btn-primary.btn-sm target="_blank" download="" style="margin-right:10px;" href="#{
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a.btn.btn-primary.btn-sm target="_blank" download="" style="margin-right:10px;" href="#{csv_file}" CSV Output File
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a.btn.btn-primary.btn-sm target="_blank" download="" style="margin-right:10px;" href="#{json_file}" JSON Output File
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a.btn.btn-primary.btn-sm target="_blank" download="" style="margin-right:10px;" href="#{summary_file}" Summary CSV Output File
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br/
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hr/
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@@ -50,7 +50,7 @@ table#sortable_table.table.table-striped.table-collapsed.table-bordered.table-co
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tbody
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- @json_data_section.each do |row|
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- json_file = "/GeneValidator/#{@gv_results[:unique_id]}/output/html_files/json/input_file_#{row[:idx]}.json"
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-
tr data-jsonfile="#{
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+
tr data-jsonfile="#{json_file}" data-target="toggle#{row[:idx]}"
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td title="idx" = row[:idx]
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td data-score="#{row[:overall_score]}"
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.ratings
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