genevalidator 2.1.4 → 2.1.5

checksums.yaml

@@ -1,7 +1,7 @@
 ---
 SHA256:
-  metadata.gz: e7a92d7a5b0f2412bccefc42282144bc0e28858db3f02d961545ba4b416658c1
-  data.tar.gz: cbd86ae35af0f1509064ba3298e000ee581aba77d09f18e3dad65f508c6114b3
+  metadata.gz: 0303c7173abb66279aefea28b6880bd5ac5b5b21c51e14a1ad31d21761bd1891
+  data.tar.gz: cb28c3a9bda45c3ddc186af26531c30ca185330820ecec63ce026d2e84bdcb7b
 SHA512:
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-  data.tar.gz: 1b605877b9261c54a094616f6e3a05b1112ca1045e16292edcee5e7ca1a9b8eabf4947bf7fdfe6a7e5ec66503243bd16eef6a505e9b426994ae971136645a445
+  metadata.gz: cc430a2219f73c144cba9e2021a90e5162f5f73a85176444d8f9f3c2e7b939c8ba54dff6c17e6fc4764291473b97195f934d7188913f615bceef85be08e3fddf
+  data.tar.gz: a760143926c88f40223c851c616328ef259851225f8114409bf72d07e00851ac899cfd51a2f665ee5fdbd7147be15fc68141dcbb4b15064e5ab1fbd131c6e528

data/Gemfile.lock

@@ -1,7 +1,7 @@
 PATH
   remote: .
   specs:
-    genevalidator (2.1.4)
+    genevalidator (2.1.5)
       bio (~> 1.4)
       bio-blastxmlparser (~> 2.0)
       genevalidatorapp (~> 2.1.4s)

data/README.md

@@ -40,15 +40,17 @@ Each analysis of each query returns a binary result (good vs. potential problem)
 Run the following in your terminal:
 
 ```bash
-sh -c "$(curl -fsSL https://raw.githubusercontent.com/wurmlab/genevalidator/master/install.sh)"
+sh -c "$(curl -fsSL https://install-genevalidator.wurmlab.com)"
 ```
 
 By default this will install in a folder called `genevalidator` in your current folder. If you wish to have GeneValidator installed in a different location, add the path to the end of the above install line. For example to install GeneValidator in a hidden folder in your home path
 
 ```bash
-sh -c "$(curl -fsSL https://raw.githubusercontent.com/wurmlab/genevalidator/master/install.sh)" ~/.genevalidator
+sh -c "$(curl -fsSL https://install-genevalidator.wurmlab.com)" ~/.genevalidator
 ```
 
+NOTE: [https://install-genevalidator.wurmlab.com](https://install-genevalidator.wurmlab.com) redirects to [https://raw.githubusercontent.com/wurmlab/genevalidator/master/install.sh](https://raw.githubusercontent.com/wurmlab/genevalidator/master/install.sh).
+
 Alternatively download and compress the standalone package from our [releases](https://github.com/wurmlab/genevalidator/releases/latest) page.
 
 The produced folder contains the following:

data/Rakefile

@@ -28,20 +28,21 @@ task :assets do
   # Requires uglifycss and uglifyjs
   # npm install uglifycss -g
   # npm install uglify-js -g
-  assets_dir = File.expand_path('aux/html_files', __dir__)
-  `rm #{assets_dir}/css/gv.compiled.min.css`
-  `rm #{assets_dir}/js/gv.compiled.min.js`
-  sh "uglifycss --output '#{assets_dir}/css/gv.compiled.min.css'" \
-     " '#{assets_dir}/css/src/font-awesome.min.css'" \
-     " '#{assets_dir}/css/src/bootstrap.min.css'" \
-     " '#{assets_dir}/css/src/style.css'"
-
-  sh "uglifyjs '#{assets_dir}/js/src/jquery-2.1.1.min.js'" \
-     " '#{assets_dir}/js/src/bootstrap.min.js'" \
-     " '#{assets_dir}/js/src/jquery.tablesorter.min.js'" \
-     " '#{assets_dir}/js/src/d3.v3.min.js'" \
-     " '#{assets_dir}/js/src/plots.js' '#{assets_dir}/js/src/script.js'" \
-     " -m -c -o '#{assets_dir}/js/gv.compiled.min.js'"
+  html_assets_dir = File.expand_path('aux/html_files', __dir__)
+  assets_dir = File.expand_path('aux/source_assets', __dir__)
+  `rm #{html_assets_dir}/css/gv.compiled.min.css`
+  `rm #{html_assets_dir}/js/gv.compiled.min.js`
+  sh "uglifycss --output '#{html_assets_dir}/css/gv.compiled.min.css'" \
+     " '#{assets_dir}/css/font-awesome.min.css'" \
+     " '#{assets_dir}/css/bootstrap.min.css'" \
+     " '#{assets_dir}/css/style.css'"
+
+  sh "uglifyjs '#{assets_dir}/js/jquery-2.1.1.min.js'" \
+     " '#{assets_dir}/js/bootstrap.min.js'" \
+     " '#{assets_dir}/js/jquery.tablesorter.min.js'" \
+     " '#{assets_dir}/js/d3.v3.min.js'" \
+     " '#{assets_dir}/js/plots.js' '#{assets_dir}/js/script.js'" \
+     " -m -c -o '#{html_assets_dir}/js/gv.compiled.min.js'"
 end
 
 desc 'Generates documentation'

data/bin/genevalidator

@@ -384,7 +384,7 @@ elsif command == 'serve'
   dir = ARGV[0]
   index_file = File.basename(Dir[File.join(dir, '*.html')].min)
   app = Rack::Static.new nil, urls: [''], root: dir, index: index_file
-  Rack::Server.start app: app, port: opt[:file_server_port], StartCallback: proc {
+  Rack::Server.start app: app, Port: opt[:file_server_port], StartCallback: proc {
     open_in_browser("http://localhost:#{opt[:file_server_port]}")
   }
 elsif command == 'app'

data/lib/genevalidator/version.rb

@@ -1,3 +1,3 @@
 module GeneValidator
-  VERSION = '2.1.4'.freeze
+  VERSION = '2.1.5'.freeze
 end

metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: genevalidator
 version: !ruby/object:Gem::Version
-  version: 2.1.4
+  version: 2.1.5
 platform: ruby
 authors:
 - Monica Dragan
@@ -11,7 +11,7 @@ authors:
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2018-08-15 00:00:00.000000000 Z
+date: 2018-08-16 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: minitest
@@ -172,9 +172,6 @@ files:
 - Rakefile
 - aux/gv_results.slim
 - aux/html_files/css/gv.compiled.min.css
-- aux/html_files/css/src/bootstrap.min.css
-- aux/html_files/css/src/font-awesome.min.css
-- aux/html_files/css/src/style.css
 - aux/html_files/fonts/FontAwesome.otf
 - aux/html_files/fonts/fontawesome-webfont.eot
 - aux/html_files/fonts/fontawesome-webfont.svg
@@ -182,13 +179,16 @@ files:
 - aux/html_files/fonts/fontawesome-webfont.woff
 - aux/html_files/img/gene.png
 - aux/html_files/js/gv.compiled.min.js
-- aux/html_files/js/src/bootstrap.min.js
-- aux/html_files/js/src/d3.v3.min.js
-- aux/html_files/js/src/jquery-2.1.1.min.js
-- aux/html_files/js/src/jquery.tablesorter.min.js
-- aux/html_files/js/src/plots.js
-- aux/html_files/js/src/script.js
 - aux/html_files/json/.gitkeep
+- aux/source_assets/css/bootstrap.min.css
+- aux/source_assets/css/font-awesome.min.css
+- aux/source_assets/css/style.css
+- aux/source_assets/js/bootstrap.min.js
+- aux/source_assets/js/d3.v3.min.js
+- aux/source_assets/js/jquery-2.1.1.min.js
+- aux/source_assets/js/jquery.tablesorter.min.js
+- aux/source_assets/js/plots.js
+- aux/source_assets/js/script.js
 - bin/genevalidator
 - exemplar_data/README.md
 - exemplar_data/mrna_data.fa