genevalidator 2.1.4 → 2.1.5

Sign up to get free protection for your applications and to get access to all the features.
checksums.yaml CHANGED
@@ -1,7 +1,7 @@
1
1
  ---
2
2
  SHA256:
3
- metadata.gz: e7a92d7a5b0f2412bccefc42282144bc0e28858db3f02d961545ba4b416658c1
4
- data.tar.gz: cbd86ae35af0f1509064ba3298e000ee581aba77d09f18e3dad65f508c6114b3
3
+ metadata.gz: 0303c7173abb66279aefea28b6880bd5ac5b5b21c51e14a1ad31d21761bd1891
4
+ data.tar.gz: cb28c3a9bda45c3ddc186af26531c30ca185330820ecec63ce026d2e84bdcb7b
5
5
  SHA512:
6
- metadata.gz: 6755a984c58331863d07c4dd468b37e359b4e165ac13129b7cb281b22bf3ac8046c51fc7955d351acb2b89e1b77050d38617372768c2548bd64cacca778219ed
7
- data.tar.gz: 1b605877b9261c54a094616f6e3a05b1112ca1045e16292edcee5e7ca1a9b8eabf4947bf7fdfe6a7e5ec66503243bd16eef6a505e9b426994ae971136645a445
6
+ metadata.gz: cc430a2219f73c144cba9e2021a90e5162f5f73a85176444d8f9f3c2e7b939c8ba54dff6c17e6fc4764291473b97195f934d7188913f615bceef85be08e3fddf
7
+ data.tar.gz: a760143926c88f40223c851c616328ef259851225f8114409bf72d07e00851ac899cfd51a2f665ee5fdbd7147be15fc68141dcbb4b15064e5ab1fbd131c6e528
@@ -1,7 +1,7 @@
1
1
  PATH
2
2
  remote: .
3
3
  specs:
4
- genevalidator (2.1.4)
4
+ genevalidator (2.1.5)
5
5
  bio (~> 1.4)
6
6
  bio-blastxmlparser (~> 2.0)
7
7
  genevalidatorapp (~> 2.1.4s)
data/README.md CHANGED
@@ -40,15 +40,17 @@ Each analysis of each query returns a binary result (good vs. potential problem)
40
40
  Run the following in your terminal:
41
41
 
42
42
  ```bash
43
- sh -c "$(curl -fsSL https://raw.githubusercontent.com/wurmlab/genevalidator/master/install.sh)"
43
+ sh -c "$(curl -fsSL https://install-genevalidator.wurmlab.com)"
44
44
  ```
45
45
 
46
46
  By default this will install in a folder called `genevalidator` in your current folder. If you wish to have GeneValidator installed in a different location, add the path to the end of the above install line. For example to install GeneValidator in a hidden folder in your home path
47
47
 
48
48
  ```bash
49
- sh -c "$(curl -fsSL https://raw.githubusercontent.com/wurmlab/genevalidator/master/install.sh)" ~/.genevalidator
49
+ sh -c "$(curl -fsSL https://install-genevalidator.wurmlab.com)" ~/.genevalidator
50
50
  ```
51
51
 
52
+ NOTE: [https://install-genevalidator.wurmlab.com](https://install-genevalidator.wurmlab.com) redirects to [https://raw.githubusercontent.com/wurmlab/genevalidator/master/install.sh](https://raw.githubusercontent.com/wurmlab/genevalidator/master/install.sh).
53
+
52
54
  Alternatively download and compress the standalone package from our [releases](https://github.com/wurmlab/genevalidator/releases/latest) page.
53
55
 
54
56
  The produced folder contains the following:
data/Rakefile CHANGED
@@ -28,20 +28,21 @@ task :assets do
28
28
  # Requires uglifycss and uglifyjs
29
29
  # npm install uglifycss -g
30
30
  # npm install uglify-js -g
31
- assets_dir = File.expand_path('aux/html_files', __dir__)
32
- `rm #{assets_dir}/css/gv.compiled.min.css`
33
- `rm #{assets_dir}/js/gv.compiled.min.js`
34
- sh "uglifycss --output '#{assets_dir}/css/gv.compiled.min.css'" \
35
- " '#{assets_dir}/css/src/font-awesome.min.css'" \
36
- " '#{assets_dir}/css/src/bootstrap.min.css'" \
37
- " '#{assets_dir}/css/src/style.css'"
38
-
39
- sh "uglifyjs '#{assets_dir}/js/src/jquery-2.1.1.min.js'" \
40
- " '#{assets_dir}/js/src/bootstrap.min.js'" \
41
- " '#{assets_dir}/js/src/jquery.tablesorter.min.js'" \
42
- " '#{assets_dir}/js/src/d3.v3.min.js'" \
43
- " '#{assets_dir}/js/src/plots.js' '#{assets_dir}/js/src/script.js'" \
44
- " -m -c -o '#{assets_dir}/js/gv.compiled.min.js'"
31
+ html_assets_dir = File.expand_path('aux/html_files', __dir__)
32
+ assets_dir = File.expand_path('aux/source_assets', __dir__)
33
+ `rm #{html_assets_dir}/css/gv.compiled.min.css`
34
+ `rm #{html_assets_dir}/js/gv.compiled.min.js`
35
+ sh "uglifycss --output '#{html_assets_dir}/css/gv.compiled.min.css'" \
36
+ " '#{assets_dir}/css/font-awesome.min.css'" \
37
+ " '#{assets_dir}/css/bootstrap.min.css'" \
38
+ " '#{assets_dir}/css/style.css'"
39
+
40
+ sh "uglifyjs '#{assets_dir}/js/jquery-2.1.1.min.js'" \
41
+ " '#{assets_dir}/js/bootstrap.min.js'" \
42
+ " '#{assets_dir}/js/jquery.tablesorter.min.js'" \
43
+ " '#{assets_dir}/js/d3.v3.min.js'" \
44
+ " '#{assets_dir}/js/plots.js' '#{assets_dir}/js/script.js'" \
45
+ " -m -c -o '#{html_assets_dir}/js/gv.compiled.min.js'"
45
46
  end
46
47
 
47
48
  desc 'Generates documentation'
@@ -384,7 +384,7 @@ elsif command == 'serve'
384
384
  dir = ARGV[0]
385
385
  index_file = File.basename(Dir[File.join(dir, '*.html')].min)
386
386
  app = Rack::Static.new nil, urls: [''], root: dir, index: index_file
387
- Rack::Server.start app: app, port: opt[:file_server_port], StartCallback: proc {
387
+ Rack::Server.start app: app, Port: opt[:file_server_port], StartCallback: proc {
388
388
  open_in_browser("http://localhost:#{opt[:file_server_port]}")
389
389
  }
390
390
  elsif command == 'app'
@@ -1,3 +1,3 @@
1
1
  module GeneValidator
2
- VERSION = '2.1.4'.freeze
2
+ VERSION = '2.1.5'.freeze
3
3
  end
metadata CHANGED
@@ -1,7 +1,7 @@
1
1
  --- !ruby/object:Gem::Specification
2
2
  name: genevalidator
3
3
  version: !ruby/object:Gem::Version
4
- version: 2.1.4
4
+ version: 2.1.5
5
5
  platform: ruby
6
6
  authors:
7
7
  - Monica Dragan
@@ -11,7 +11,7 @@ authors:
11
11
  autorequire:
12
12
  bindir: bin
13
13
  cert_chain: []
14
- date: 2018-08-15 00:00:00.000000000 Z
14
+ date: 2018-08-16 00:00:00.000000000 Z
15
15
  dependencies:
16
16
  - !ruby/object:Gem::Dependency
17
17
  name: minitest
@@ -172,9 +172,6 @@ files:
172
172
  - Rakefile
173
173
  - aux/gv_results.slim
174
174
  - aux/html_files/css/gv.compiled.min.css
175
- - aux/html_files/css/src/bootstrap.min.css
176
- - aux/html_files/css/src/font-awesome.min.css
177
- - aux/html_files/css/src/style.css
178
175
  - aux/html_files/fonts/FontAwesome.otf
179
176
  - aux/html_files/fonts/fontawesome-webfont.eot
180
177
  - aux/html_files/fonts/fontawesome-webfont.svg
@@ -182,13 +179,16 @@ files:
182
179
  - aux/html_files/fonts/fontawesome-webfont.woff
183
180
  - aux/html_files/img/gene.png
184
181
  - aux/html_files/js/gv.compiled.min.js
185
- - aux/html_files/js/src/bootstrap.min.js
186
- - aux/html_files/js/src/d3.v3.min.js
187
- - aux/html_files/js/src/jquery-2.1.1.min.js
188
- - aux/html_files/js/src/jquery.tablesorter.min.js
189
- - aux/html_files/js/src/plots.js
190
- - aux/html_files/js/src/script.js
191
182
  - aux/html_files/json/.gitkeep
183
+ - aux/source_assets/css/bootstrap.min.css
184
+ - aux/source_assets/css/font-awesome.min.css
185
+ - aux/source_assets/css/style.css
186
+ - aux/source_assets/js/bootstrap.min.js
187
+ - aux/source_assets/js/d3.v3.min.js
188
+ - aux/source_assets/js/jquery-2.1.1.min.js
189
+ - aux/source_assets/js/jquery.tablesorter.min.js
190
+ - aux/source_assets/js/plots.js
191
+ - aux/source_assets/js/script.js
192
192
  - bin/genevalidator
193
193
  - exemplar_data/README.md
194
194
  - exemplar_data/mrna_data.fa