genecrmod 0.2.2 → 0.2.3
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- checksums.yaml +4 -4
- data/VERSION +1 -1
- data/genecrmod.gemspec +3 -3
- data/lib/genecrmod/gene.rb +6 -5
- data/lib/genecrmod/hdf5.rb +3 -1
- data/test/linear_run/.CODE_RUNNER_TEMP_RUN_LIST_CACHE +0 -0
- metadata +2 -2
checksums.yaml
CHANGED
@@ -1,7 +1,7 @@
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1
1
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---
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2
2
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SHA1:
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3
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-
metadata.gz:
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4
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-
data.tar.gz:
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3
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+
metadata.gz: 7938f1cf7fa6c6d75757a3d78b995cc0bbcd49c4
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4
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+
data.tar.gz: 72a2d2d1f472665cf5e7279173ae2f8b1647a17c
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5
5
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SHA512:
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6
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-
metadata.gz:
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7
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-
data.tar.gz:
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6
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+
metadata.gz: a9923c1cbb1e840c62784b6f6fcdb6c7cb46037087e19f0bc1c9fb0ac6f30a20a64ca5a044edc5a477028d9fbf32126a51110bbb705a5b15f01532e5ec71dd2e
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7
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+
data.tar.gz: 722b2b098f705b6f53897e43f7c6166e38da9787e4b34a325e7f4d3e9e2dd68e44347d32064a2de243258630a03f9a7149cb1cfe351b049b6442971d311e8e98
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data/VERSION
CHANGED
@@ -1 +1 @@
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1
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-
0.2.
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1
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+
0.2.3
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data/genecrmod.gemspec
CHANGED
@@ -2,16 +2,16 @@
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2
2
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# DO NOT EDIT THIS FILE DIRECTLY
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3
3
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# Instead, edit Jeweler::Tasks in Rakefile, and run 'rake gemspec'
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4
4
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# -*- encoding: utf-8 -*-
|
5
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-
# stub: genecrmod 0.2.
|
5
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+
# stub: genecrmod 0.2.3 ruby lib
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6
6
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7
7
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Gem::Specification.new do |s|
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8
8
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s.name = "genecrmod"
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9
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-
s.version = "0.2.
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9
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+
s.version = "0.2.3"
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10
10
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11
11
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s.required_rubygems_version = Gem::Requirement.new(">= 0") if s.respond_to? :required_rubygems_version=
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12
12
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s.require_paths = ["lib"]
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13
13
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s.authors = ["Edmund Highcock"]
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14
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-
s.date = "2014-
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14
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+
s.date = "2014-12-03"
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15
15
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s.description = "A module which allows the GENE gyrokinetic code to be run using the CodeRunner framework. "
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16
16
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s.email = "edmundhighcock@users.sourceforge.net"
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17
17
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s.extra_rdoc_files = [
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data/lib/genecrmod/gene.rb
CHANGED
@@ -27,6 +27,7 @@ class CodeRunner
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27
27
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###################################################
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28
28
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29
29
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@results = [
|
30
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+
:growth_rates
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30
31
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]
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31
32
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32
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@code_long="GENE Gyrokinetic Electromagnetic Numerical Experiment"
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@@ -201,7 +202,7 @@ class CodeRunner
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201
202
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end
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202
203
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end
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203
204
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#p ['fusionQ is ', fusionQ]
|
204
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-
@percent_complete = completed_timesteps.to_f / ntimesteps.to_f * 100.0
|
205
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+
@percent_complete = completed_timesteps.to_f * (istep_nrg||10) / ntimesteps.to_f * 100.0
|
205
206
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end
|
206
207
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|
207
208
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def get_status
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@@ -229,11 +230,11 @@ class CodeRunner
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229
230
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end
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230
231
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def get_completed_timesteps
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231
232
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Dir.chdir(@directory) do
|
232
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-
if FileTest.exist?('nrg.dat.h5')
|
233
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-
|
234
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-
else
|
233
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+
#if FileTest.exist?('nrg.dat.h5')
|
234
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+
#@completed_timesteps = get_h5_narray_all('nrg.dat.h5', '/nrgIons/time').shape[0]
|
235
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+
#else
|
235
236
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@completed_timesteps = %x[grep '^\\s\\+\\S\\+\\s*$' nrg.dat 2>/dev/null].split("\n").size
|
236
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-
end
|
237
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+
#end
|
237
238
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end
|
238
239
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end
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239
240
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data/lib/genecrmod/hdf5.rb
CHANGED
Binary file
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metadata
CHANGED
@@ -1,14 +1,14 @@
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1
1
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--- !ruby/object:Gem::Specification
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2
2
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name: genecrmod
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3
3
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version: !ruby/object:Gem::Version
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4
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-
version: 0.2.
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4
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+
version: 0.2.3
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5
5
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platform: ruby
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6
6
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authors:
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7
7
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- Edmund Highcock
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8
8
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autorequire:
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9
9
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bindir: bin
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10
10
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cert_chain: []
|
11
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-
date: 2014-
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11
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+
date: 2014-12-03 00:00:00.000000000 Z
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12
12
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dependencies:
|
13
13
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- !ruby/object:Gem::Dependency
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14
14
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name: coderunner
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