genecrmod 0.1.3 → 0.1.4

checksums.yaml

@@ -1,7 +1,7 @@
 ---
 SHA1:
-  metadata.gz: 2a57561208f99d5af7ac3945efba844997881d26
-  data.tar.gz: 05c300f40bdb7008a8a033b05125e3c35a363c79
+  metadata.gz: fc521d54eaad95dd45e39c6b0f85bfc30617491d
+  data.tar.gz: 3cc5e327ef26e61efac091af0cbaa9808e0f228a
 SHA512:
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-  data.tar.gz: 89df6463d0ead7bfc5c1fd1dbafc139024cadfa74f157511c3c7e858bd51523b6781b6bf73fc003180075387f68185c2a0e60b1a5a9350e6ded017044c4092fa
+  metadata.gz: 91056259c1f66717946795b669e09ba0c1cb1d524e036555a3ec14c694ca1a5a94985fdb5f67fd5f3c0eab0ff901d685aadcc2cf39d329852855c0a46dd4a1f5
+  data.tar.gz: 168750347667e982e0ee42a84625f11da2f8a1872cd26f7225f37193dcd92c8aac8fc8da5058e09964871051303de777652a01eaeb1a517b556d822639972f6a

data/VERSION

@@ -1 +1 @@
-0.1.3
+0.1.4

data/genecrmod.gemspec

@@ -2,11 +2,11 @@
 # DO NOT EDIT THIS FILE DIRECTLY
 # Instead, edit Jeweler::Tasks in Rakefile, and run 'rake gemspec'
 # -*- encoding: utf-8 -*-
-# stub: genecrmod 0.1.3 ruby lib
+# stub: genecrmod 0.1.4 ruby lib
 
 Gem::Specification.new do |s|
   s.name = "genecrmod"
-  s.version = "0.1.3"
+  s.version = "0.1.4"
 
   s.required_rubygems_version = Gem::Requirement.new(">= 0") if s.respond_to? :required_rubygems_version=
   s.require_paths = ["lib"]

data/lib/genecrmod/gene.rb

@@ -193,9 +193,12 @@ class CodeRunner
     def process_directory_code_specific
       get_status
       #p ['id is', id, 'ctd is ', ctd]
-      #if ctd
+      if ctd
         #get_global_results
-      #end
+        if !nonlinear or nonlinear.fortran_false?
+          get_growth_rates
+        end
+      end
       #p ['fusionQ is ', fusionQ]
       @percent_complete = completed_timesteps.to_f / ntimesteps.to_f * 100.0
     end
@@ -275,38 +278,22 @@ EOF1
       ''
     end
 
-@msdatching_regex = Regexp.new('(^|\A)(?<everything>[^!
-]*?\b #a word boundary
-
-  (?<name>[A-Za-z_]\w*)  # the name, which must be a single word (not beginning
-          # with a digit) followed by
-
-  \s*=\s*    # an equals sign (possibly with whitespace either side), then
-
-  (?<default>(?>    # the default answer, which can be either:
-
-    (?<string>' + Regexp.quoted_string.to_s + ')      # a quoted string
-
-    |           # or
-
-
-                (?<float>\-?(?:(?>\d+\.\d*)|(?>\d*\.\d+))(?:[eEdD][+-]?\d+)?)(?:_RKIND)? # a floating point number
-
-    |           #or
-
-    (?<int>\-?\d++) # an integer
-
-    |         #or
-
-                (?<complex>\((?:\-?(?:(?>\d+\.\d*)|(?>\d*\.\d+))(?:[eEdD][+-]?\d+)?),\s*(?:\-?(?:(?>\d+\.\d*)|(?>\d*\.\d+))(?:[eEdD][+-]?\d+)?)\)) #a complex number
-
-    |         #or
-
-
-    (?:(?<word>\S+)(?=\s|\)|\]|[\n\r]+|\Z)) # a single word containing no spaces
-            # which must be followed by a space or ) or ] or \n or \Z
+    def get_growth_rates
+      Dir.chdir(@directory) do
+        if FileTest.exist?('omega.dat')
+          @kyvals, @growth_rates, @frequencies = GSL::Vector.filescan('omega.dat')
+        else
+          @kyvals, @growth_rates, @frequencies = [[]] * 3
+        end
+      end
+    end
+    def graphkit(name, options={})
+      case name
+      when /growth_rates_vs_ky/
+        return GraphKit.quick_create([@kyvals, @growth_rates])
+      end
+    end
 
-  )))', Regexp::EXTENDED)
   end
 end
 

metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: genecrmod
 version: !ruby/object:Gem::Version
-  version: 0.1.3
+  version: 0.1.4
 platform: ruby
 authors:
 - Edmund Highcock