gene-matcher 0.1.7 → 0.1.8

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Files changed (3) hide show
  1. checksums.yaml +4 -4
  2. data/lib/gene-matcher.rb +4 -2
  3. metadata +2 -2
checksums.yaml CHANGED
@@ -1,7 +1,7 @@
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data/lib/gene-matcher.rb CHANGED
@@ -2,11 +2,12 @@
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  require_relative 'smith-waterman'
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  class Matcher
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- attr_accessor :input_sequence, :limit
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+ attr_accessor :input_sequence, :limit, :reserve_target_sequence
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  attr_reader :alignments
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  def initialize(input_sequence, limit = 0.6)
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  @limit = limit
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+ @reserve_target_sequence = false
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  @input_sequence = input_sequence
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  @alignments = []
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  end
@@ -14,7 +15,8 @@ class Matcher
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  def scan(target_sequence,source = {})
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  sw = SmithWaterman.instance
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  a = sw.alignment(target_sequence, @input_sequence)
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- a.source = {target_sequence: target_sequence}.merge(source)
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+ a.source = {}.merge(source)
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+ a.source[:target_sequence] = target_sequence if @reserve_target_sequence
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  puts "#{a.score} / #{a.alignment_count} = #{a.score / a.alignment_count}" if ENV["DEBUG"]
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  @alignments += [a] if a.score / a.alignment_count >= @limit
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  end
metadata CHANGED
@@ -1,14 +1,14 @@
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  --- !ruby/object:Gem::Specification
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  name: gene-matcher
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  version: !ruby/object:Gem::Version
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- version: 0.1.7
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+ version: 0.1.8
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  platform: ruby
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  authors:
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  - ITO Yosei
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  autorequire:
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  bindir: bin
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  cert_chain: []
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- date: 2023-09-11 00:00:00.000000000 Z
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+ date: 2023-09-12 00:00:00.000000000 Z
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  dependencies: []
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  description: Algorithm for determining similar regions between nucleic acid sequences.
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  email: y-itou@lumber-mill.co.jp